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package compbio.ws.client;
import java.io.File;
import compbio.engine.client.ConfExecutable;
import compbio.engine.client.Executable;
import compbio.runner.conservation.AACon;
//import compbio.runner.predictors.Jpred;
import compbio.runner.disorder.Disembl;
import compbio.runner.disorder.GlobPlot;
import compbio.runner.disorder.IUPred;
import compbio.runner.disorder.Jronn;
import compbio.runner.msa.ClustalO;
import compbio.runner.msa.ClustalW;
import compbio.runner.msa.Mafft;
import compbio.runner.msa.Muscle;
import compbio.runner.msa.Probcons;
import compbio.runner.msa.MSAprobs;
import compbio.runner.msa.GLprobs;
import compbio.runner.msa.Tcoffee;
import compbio.runner.structure.RNAalifold;
public class ServicesUtil {
public static Services getServiceByRunner(Class<? extends Executable> class1) {
assert class1 != null;
String sname = class1.getSimpleName().toLowerCase();
for (Services service : Services.values()) {
if (service.toString().toLowerCase().contains(sname)) {
return service;
}
}
return null;
}
private static Class<? extends Executable<?>> getServiceImpl(Services service) {
switch (service) {
case AAConWS :
return AACon.class;
// case JpredWS :
// return Jpred.class;
case ClustalOWS :
return ClustalO.class;
case ClustalWS :
return ClustalW.class;
case MafftWS :
return Mafft.class;
case MuscleWS :
return Muscle.class;
case TcoffeeWS :
return Tcoffee.class;
case ProbconsWS :
return Probcons.class;
case MSAprobsWS :
return MSAprobs.class;
case GLprobsWS :
return GLprobs.class;
case DisemblWS :
return Disembl.class;
case GlobPlotWS :
return GlobPlot.class;
case JronnWS :
return Jronn.class;
case IUPredWS :
return IUPred.class;
case RNAalifoldWS :
return RNAalifold.class;
default :
throw new RuntimeException("Unknown web service implementation class for service: " + service);
}
}
public static Class<? extends Executable<?>> getRunnerByJobDirectory(File jobdir) {
Services service = getServiceByRunnerName(getRunnerNameByJobDirectory(jobdir));
return getServiceImpl(service);
}
private static String getRunnerNameByJobDirectory(File jobdir) {
String name = jobdir.getName().split("#")[0];
if (name.startsWith(ConfExecutable.CLUSTER_TASK_ID_PREFIX)) {
assert ConfExecutable.CLUSTER_TASK_ID_PREFIX.length() == 1;
name = name.substring(1);
}
return name;
}
public static Services getServiceByJobDirectory(File jobdir) {
return getServiceByRunnerName(getRunnerNameByJobDirectory(jobdir));
}
private static Services getServiceByRunnerName(String name) {
for (Services service : Services.values()) {
String runnerName = getServiceImpl(service).getSimpleName().toLowerCase();
name = name.trim().toLowerCase();
if (name.startsWith(runnerName)) {
return service;
}
}
return null;
}
}
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