1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309
|
package Math::GSL::Test;
use base qw(Exporter);
use base qw(DynaLoader);
use strict;
use warnings;
use Test::More;
use Math::GSL::Errno qw/:all/;
use Math::GSL::Machine qw/:all/;
use Math::GSL::Const qw/:all/;
use Math::GSL::Sys qw/gsl_nan gsl_isnan gsl_isinf/;
use Data::Dumper;
use Carp qw/croak/;
our @EXPORT = qw();
our @EXPORT_OK = qw(
is_similar ok_similar
ok_similar_relative
is_similar_relative
verify verify_results
is_windows
ok_status is_status_ok
);
use constant GSL_IS_WINDOWS => ($^O =~ /MSWin32/i) ? 1 : 0 ;
=head1 NAME
Math::GSL::Test - Assertions and such
=head1 SYNOPSIS
use Math::GSL::Test qw/:all/;
ok_similar($x,$y, $msg, $eps);
=cut
our %EXPORT_TAGS = ( all => \@EXPORT_OK,);
sub _dump_result($)
{
my $r=shift;
diag sprintf( "result->err: %.18g\n", $r->{err});
diag sprintf( "result->val: %.18g\n", $r->{val});
}
sub dump_lu_matrix
{
# Syntax: dump_lu_matrix($base->raw, $permutation, 4, 4);
my ($base, $perm, $m, $n) = @_;
# Dump the upper triangular matrix first:
my $U = "U = [";
for my $i (0..$m-1) {
for my $j (0..$n-1) {
if ($j >= $i) {
$U .= sprintf "%g ", $base->[$i*$n + $j];
} else {
$U .= "0 ";
}
}
$U .= "\n";
}
diag $U . "]\n";
# Now dump the lower triangular matrix:
my $L = "L = [";
for my $i (0..$m-1) {
for my $j (0..$n-1) {
if ($j < $i) {
$L .= sprintf "%g ", $base->[$i*$n + $j];
} elsif ($j == $i) {
$L .= "1 ";
} else {
$L .= "0 ";
}
}
$L .= "\n";
}
diag $L . "]\n";
}
=head2 is_windows()
Returns true if current system is Windows-like.
=cut
sub is_windows() { GSL_IS_WINDOWS }
=head2 is_similar($x,$y;$eps,$similarity_function)
is_similar($x,$y);
is_similar($x, $y, 1e-7);
is_similar($x,$y, 1e-3, sub { ... } );
Return true if $x and $y are within $eps of each other, i.e.
abs($x-$y) <= $eps
If passed a code reference $similarity_function, it will pass $x and $y as parameters to it and
will check to see if
$similarity_function->($x,$y_) <= $eps
The default value of $eps is 1e-8. Don't try sending anything to the Moon with this value...
=cut
sub is_similar {
my ($x,$y, $eps, $similarity_function) = @_;
local $Test::Builder::Level = $Test::Builder::Level + 1;
$eps ||= 1e-8;
if (ref $x eq 'ARRAY' && ref $y eq 'ARRAY') {
if ( $#$x != $#$y ){
diag "is_similar(): items differ in length, $#$x != $#$y !!!";
return 0;
} else {
map {
my $delta = (gsl_isnan($x->[$_]) or gsl_isnan($y->[$_])) ? gsl_nan() : abs($x->[$_] - $y->[$_]);
if($delta > $eps){
diag "\n\tElements start differing at index $_, delta = $delta\n";
diag qq{\t\t\$x->[$_] = } . $x->[$_] . "\n";
diag qq{\t\t\$y->[$_] = } . $y->[$_] . "\n";
return 0;
}
} (0..$#$x);
return 1;
}
} else {
if( ref $similarity_function eq 'CODE') {
$similarity_function->($x,$y) <= $eps ? return 1 : return 0;
} elsif( defined $x && defined $y) {
my $delta = (gsl_isnan($x) or gsl_isnan($y)) ? gsl_nan() : abs($x-$y);
$delta > $eps ? diag qq{\t\t\$x=$x\n\t\t\$y=$y\n\t\tdelta=$delta\n} && return 0 : return 1;
} else {
return 0;
}
}
}
# this is a huge hack
sub verify_results
{
my ($results,$class, $eps) = @_;
# GSL uses a factor of 100
my $factor = 100;
my ($x,$res);
local $Test::Builder::Level = $Test::Builder::Level + 1;
# If no epsilon is passed in, default to TOL3 from the GSL test suite
$eps ||= 2048*$Math::GSL::Machine::GSL_DBL_EPSILON; # TOL3
croak "Usage: verify_results(%results, \$class)" unless $class;
while (my($code,$expected)=each %$results){
my $r = Math::GSL::SF::gsl_sf_result_struct->new;
my $status = eval qq{${class}::$code};
ok(0, qq{'$code' died: $@} ) if !defined $status;
if ( defined $r && $code =~ /_e\(.*\$r/) {
$x = $r->{val};
# if $eps=0, give some default
$eps = $factor*$r->{err} || 1e-8;
$res = abs($x-$expected);
if ($ENV{DEBUG} ){
_dump_result($r);
#print "got $code = $x\n";
diag sprintf("expected : %.18g\n", $expected);
diag sprintf("difference : %.18g\n", $res);
diag sprintf("unexpected error of %.18g\n", $res-$eps) if ($res-$eps>0);
}
if (gsl_isnan($x)) {
ok( gsl_isnan($expected), sprintf("'$expected'?='$x' (%16b ?= %16b)", $expected, $x) );
} elsif(gsl_isinf($x)) {
ok( gsl_isinf($expected), sprintf("'$expected'?='$x' (%16b ?= %16b)", $expected, $x) );
} else {
cmp_ok( $res,'<=', $eps, "$code ?= $x,\nres= +-$res, eps=$eps" );
}
}
}
}
=head2 verify( $results, $class)
Takes a hash reference of key/value pairs where the keys are bits of code, which when evaluated should
be within some tolerance of the value. For example:
my $results = {
'gsl_cdf_ugaussian_P(2.0)' => [ 0.977250, 1e-5 ],
'gsl_cdf_ugaussian_Q(2.0)' => [ 0.022750, 1e-7 ],
'gsl_cdf_ugaussian_Pinv(0.977250)'=> [ 2.000000 ],
};
verify($results, 'Math::GSL::CDF');
When no tolerance is given, a value of 1e-8 = 0.00000001 is used. One
may use $GSL_NAN and $GSL_INF in comparisons and this routine will
use the gsl_isnan() and gsl_isinf() routines to compare them.
Note: Needing to pass in the class name is honky. This may change.
=cut
sub verify
{
my ($results,$class) = @_;
local $Test::Builder::Level = $Test::Builder::Level + 1;
croak "Usage: verify(%results, \$class)" unless $class;
while (my($code,$result)=each %$results){
my $x = eval qq{${class}::$code};
ok(0, $@) if $@;
croak(__PACKAGE__." : $result is not an array reference!") unless ref $result;
my($expected,$eps)=@$result;
$eps ||= 1e-8;
if (gsl_isnan($x)) {
ok( gsl_isnan($expected), "'$expected'?='$x'" );
} elsif(gsl_isinf($x)) {
ok( gsl_isinf($expected), "'$expected'?='$x'" );
} else {
my $res = abs($x - $expected);
ok( $res <= $eps, "$code ?= $x,\nres= +-$res, eps=$eps" );
}
}
}
=head2 ok_status( $got_status; $expected_status )
ok_status( $status ); # defaults to checking for $GSL_SUCCESS
ok_status( $status, $GSL_ECONTINUE );
Pass a test if the GSL status codes match, with a default expected status of $GSL_SUCCESS. This
function also stringifies the status codes into meaningful messages when it fails.
=cut
sub ok_status {
my ($got, $expected, $msg ) = @_;
local $Test::Builder::Level = $Test::Builder::Level + 1;
$expected ||= $GSL_SUCCESS;
my $strerr = $got ? gsl_strerror(int($got)) : '';
ok( defined $got && $got == $expected, $msg ? "$msg: " .$strerr : $strerr );
}
=head2 is_status_ok($status)
is_status_ok( $status );
Return true if $status is $GSL_SUCCESS, false otherwise.
=cut
sub is_status_ok {
my ($got) = shift;
local $Test::Builder::Level = $Test::Builder::Level + 1;
return ( defined $got && $got == $GSL_SUCCESS ) ? 1 : 0 ;
}
=head2 ok_similar( $x, $y, $msg, $eps)
ok_similar( $x, $y);
ok_similar( $x, $y, 'reason');
ok_similar( $x, $y, 'reason', 1e-4);
Pass a test if is_similar($x,$y,$msg,$eps) is true, otherwise fail.
=cut
sub ok_similar {
my ($x,$y, $msg, $eps) = @_;
local $Test::Builder::Level = $Test::Builder::Level + 1;
ok(is_similar($x,$y,$eps), $msg);
}
=head2 is_similar_relative( $x, $y, $msg, $eps )
is_similar_relative($x, $y, $eps );
Returns true if $x has a relative error with respect to $y less than $eps. The
current default for $eps is the same as is_similar(), i.e. 1e-8. This doesn't
seem very useful. What should the default be?
=cut
sub is_similar_relative {
my ($x,$y, $eps) = @_;
local $Test::Builder::Level = $Test::Builder::Level + 1;
return is_similar($x,$y,$eps, sub { abs( ($_[0] - $_[1])/abs($_[1]) ) } );
}
=head2 ok_similar_relative( $x, $y, $msg, $eps )
ok_similar_relative($x, $y, $msg, $eps );
Pass a test if $x has a relative error with respect to $y less than $eps.
=cut
sub ok_similar_relative {
my ($x,$y, $msg, $eps,) = @_;
local $Test::Builder::Level = $Test::Builder::Level + 1;
ok(is_similar_relative($x,$y,$eps), $msg );
}
1;
|