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TESTS=testAIO.sh testargparser.sh testarraydecode.sh testarrayinput.sh testautoarray2d.sh testbitbtree.sh testBitIO.sh testRank.sh testdnarank.sh testintervaltree.sh
TEST_ENVIRONMENT=
LOG_COMPILER=/bin/bash
EXTRA_DIST=testAIO.sh configure.gz.sh base64decode.sh testargparser.sh testarraydecode.sh testarrayinput.sh testautoarray2d.sh testbitbtree.sh testBitIO.sh testRank.sh testdnarank.sh testintervaltree.sh
# skipped: testalignerspeed
# testbamcat testbamdamage testbamheaderparser testbammateerase testbammergecoordinate testbamrange testbamtofastq
# testbamcmp testbamdif testbamindex testbammergecollate testbammergequeryname testbamrewrite testbamwriter
#check_PROGRAMS= # bamcmp bamtosam
#bamcmp_SOURCES = bamcmp.cpp
#bamcmp_LDADD = ${LIBMAUS2LIBS}
#bamcmp_LDFLAGS = ${AM_CPPFLAGS} ${LIBMAUS2CPPFLAGS} ${LIBMAUS2LDFLAGS} ${AM_LDFLAGS}
#bamcmp_CPPFLAGS = ${AM_CPPFLAGS} ${LIBMAUS2CPPFLAGS}
#bamtosam_SOURCES = bamtosam.cpp
#bamtosam_LDADD = ${LIBMAUS2LIBS}
#bamtosam_LDFLAGS = ${AM_CPPFLAGS} ${LIBMAUS2CPPFLAGS} ${LIBMAUS2LDFLAGS} ${AM_LDFLAGS}
#bamtosam_CPPFLAGS = ${AM_CPPFLAGS} ${LIBMAUS2CPPFLAGS}
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