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|
name: Tests
on:
push:
pull_request:
schedule:
- cron: '0 6 * * 1'
jobs:
all:
if: github.event_name != 'schedule' || github.repository == 'libmbd/libmbd'
name: All
strategy:
fail-fast: false
matrix:
include:
- type: ubuntu
mpi-nodes: 2
- type: macos
mpi-nodes: 2
- type: conda
- type: conda
mpi: openmpi
mpi-nodes: 8
elsi: elsi
- type: conda
mpi: mpich
mpi-nodes: 2
- type: conda
python-version: =3.6
cmake-version: =3.14
gfortran-version: =8
mpi: openmpi
mpi-nodes: 8
- type: conda
python-version: =3.6
cmake-version: =3.14
gfortran-version: =8
mpi: mpich=3.4.3=\*_100
mpi-nodes: 2
elsi: elsi
runs-on: ${{ fromJSON('{"ubuntu":"ubuntu-latest","macos":"macos-latest","conda":"ubuntu-latest"}')[matrix.type] }}
env:
CONDA_ALWAYS_YES: "true"
CONDA_QUIET: "true"
steps:
- name: Set environment variables
run: |
case ${{ runner.os }} in
Linux)
XDG_CACHE_HOME=$HOME/.cache
;;
macOS)
XDG_CACHE_HOME=$HOME/Library/Caches
;;
esac
echo YEAR_MONTH=$(date +"%Y-%m") >>$GITHUB_ENV
echo XDG_CACHE_HOME="$XDG_CACHE_HOME" >>$GITHUB_ENV
if [[ "${{ matrix.mpi-nodes }}" ]]; then
echo MPI_NODES=${{ matrix.mpi-nodes }} >>$GITHUB_ENV
fi
if [[ "${{ matrix.mpi }}" == "openmpi" || "${{ matrix.type }}" == "ubuntu" ]]; then
echo MPIEXEC_EXTRA_FLAGS=--oversubscribe >>$GITHUB_ENV
fi
echo VIRTUAL_ENV=$HOME/env >>$GITHUB_ENV
echo CONDA_PKGS_DIRS="$XDG_CACHE_HOME/conda/pkgs" >>$GITHUB_ENV
echo $HOME/env/bin >>$GITHUB_PATH
- uses: actions/checkout@v2
with:
fetch-depth: 0
- uses: actions/cache@v2
with:
path: |
${{ env.XDG_CACHE_HOME }}/conda/pkgs
${{ env.XDG_CACHE_HOME }}/pip
key: ${{ matrix.type }}-${{ matrix.python-version }}-${{ matrix.cmake-version }}-${{ matrix.gfortran-version }}-${{ matrix.mpi }}-${{ env.YEAR_MONTH }}-${{ hashFiles('pyproject.toml') }}
- name: Install libMBD dependencies
if: matrix.type == 'ubuntu'
run: sudo apt-get install -yq --no-install-suggests --no-install-recommends gfortran libblas-dev liblapack-dev mpi-default-dev mpi-default-bin libscalapack-mpi-dev
- name: Install libMBD dependencies
if: matrix.type == 'macos'
run: brew install open-mpi scalapack
- name: Create Conda environment
if: matrix.type == 'conda'
run: conda create -p ${{ env.VIRTUAL_ENV }} -c conda-forge python${{ matrix.python-version }} cmake${{ matrix.cmake-version }} gfortran_linux-64${{ matrix.gfortran-version }} openblas ${{ matrix.mpi }} scalapack elsi numpy scipy mpi4py
- name: Create Python virtual environment
if: matrix.type != 'conda'
run: |
python3 -m venv ${{ env.VIRTUAL_ENV }}
${{ env.VIRTUAL_ENV }}/bin/pip install -U pip
- name: Install coverage Python package
run: pip install -U coverage
- name: Report environment
run: |
type python
type pip
python --version
cmake --version
pip --version
git describe --tags --dirty=.dirty
- name: Set CMAKE_ARGS
run: |
FFLAGS=('-fprofile-arcs' '-ftest-coverage')
CMAKE_ARGS=()
if [[ "${{ matrix.mpi-nodes }}" ]]; then
CMAKE_ARGS+=('-DENABLE_SCALAPACK_MPI=ON')
fi
if [[ "${{ matrix.elsi }}" == "elsi" ]]; then
CMAKE_ARGS+=('-DENABLE_ELSI=ON')
fi
if [[ "${{ matrix.type }}" == "macos" ]]; then
CMAKE_ARGS+=('-DCMAKE_Fortran_COMPILER=gfortran-12')
fi
if [[ "${{ matrix.type }}" == "ubuntu" ]]; then
CMAKE_ARGS+=('-DCMAKE_IGNORE_PATH="/usr/lib/cmake/scalapack-2.1.0.openmpi;/lib/cmake/scalapack-2.1.0.openmpi"')
fi
echo CMAKE_ARGS=${CMAKE_ARGS[@]}
echo CMAKE_ARGS=${CMAKE_ARGS[@]} >>$GITHUB_ENV
echo FFLAGS=${FFLAGS[@]}
echo FFLAGS=${FFLAGS[@]} >>$GITHUB_ENV
- name: Run Cmake
run: |
[[ "${{ matrix.type }}" != "conda" ]] || { source $CONDA/etc/profile.d/conda.sh && conda activate $HOME/env && export CMAKE_ARGS="$CONDA_BACKUP_CMAKE_ARGS"; }
make run_cmake
- name: Build libMBD
run: make build_libmbd -o run_cmake
- name: Install libMBD
run: make install_libmbd -o build_libmbd
- name: Build & install pyMBD
run: |
[[ "${{ matrix.type }}" != "conda" ]] || { source $CONDA/etc/profile.d/conda.sh && conda activate $HOME/env; }
make install -o install_libmbd
- run: pip list
- name: Test libMBD
run: make test_libmbd
- name: Test pyMBD
run: |
make test -o test_libmbd RUN_CMD="coverage run -m" | tee output
! grep failed output >/dev/null
- name: Upload to Codecov
run: bash <(curl -s https://codecov.io/bash) -f "!*#tests#*"
|
