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/*******************************************************************************
* $Id: GenericMatch.h,v 1.10 2004/03/01 02:40:08 darling Exp $
* This file is copyright 2002-2007 Aaron Darling and authors listed in the AUTHORS file.
* This file is licensed under the GPL.
* Please see the file called COPYING for licensing details.
* **************
******************************************************************************/
#ifndef _Match_h_
#define _Match_h_
#ifdef HAVE_CONFIG_H
#include "config.h"
#endif
#include "libGenome/gnClone.h"
#include <iostream>
#include <set>
#include "libMems/UngappedLocalAlignment.h"
#include "libMems/SparseAbstractMatch.h"
#include "libMems/DenseAbstractMatch.h"
#include "libMems/HybridAbstractMatch.h"
namespace mems {
typedef UngappedLocalAlignment< HybridAbstractMatch<> > Match;
static uint seq_compare_start;
}
#endif // _Match_h_
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