1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276
1277
1278
1279
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
1292
1293
1294
1295
1296
1297
1298
1299
1300
1301
1302
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
1324
1325
1326
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
1373
1374
1375
1376
1377
1378
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
1391
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
1411
1412
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
1446
1447
1448
1449
1450
1451
1452
1453
1454
1455
1456
1457
1458
1459
1460
1461
1462
1463
1464
1465
1466
1467
1468
1469
1470
1471
1472
1473
1474
1475
1476
1477
1478
1479
1480
1481
1482
1483
1484
1485
1486
1487
1488
1489
1490
1491
1492
1493
1494
1495
1496
1497
1498
1499
1500
1501
1502
1503
1504
1505
1506
1507
1508
1509
1510
1511
1512
1513
1514
1515
1516
1517
1518
1519
1520
1521
1522
1523
1524
1525
1526
1527
1528
1529
1530
1531
1532
1533
1534
1535
1536
1537
1538
1539
1540
1541
1542
1543
1544
1545
1546
1547
1548
1549
1550
1551
1552
1553
1554
1555
1556
1557
1558
1559
1560
1561
1562
1563
1564
1565
1566
1567
1568
1569
1570
1571
1572
1573
1574
1575
1576
1577
1578
1579
1580
1581
1582
1583
1584
1585
1586
1587
1588
1589
1590
1591
1592
1593
1594
1595
1596
1597
1598
1599
1600
1601
1602
1603
1604
1605
1606
1607
1608
1609
1610
1611
1612
1613
1614
1615
1616
1617
1618
1619
1620
1621
1622
1623
1624
1625
1626
1627
1628
1629
1630
1631
1632
1633
1634
1635
1636
1637
1638
1639
1640
1641
1642
1643
1644
1645
1646
1647
1648
1649
1650
1651
1652
1653
1654
1655
1656
1657
1658
1659
1660
1661
1662
1663
1664
1665
1666
1667
1668
1669
1670
1671
1672
1673
1674
1675
1676
1677
1678
1679
1680
1681
1682
1683
1684
1685
1686
1687
1688
1689
1690
1691
1692
1693
1694
1695
1696
1697
1698
1699
1700
1701
1702
1703
1704
1705
1706
1707
1708
1709
1710
1711
1712
1713
1714
1715
1716
1717
1718
1719
1720
1721
1722
1723
1724
1725
1726
1727
1728
1729
1730
1731
1732
1733
1734
1735
1736
1737
1738
1739
1740
1741
1742
1743
1744
1745
1746
1747
1748
1749
1750
1751
1752
1753
1754
1755
1756
1757
1758
1759
1760
1761
1762
1763
1764
1765
1766
1767
1768
1769
1770
1771
1772
1773
1774
1775
1776
1777
1778
1779
1780
1781
1782
1783
1784
1785
1786
1787
1788
1789
1790
1791
1792
1793
1794
1795
1796
1797
1798
1799
1800
1801
1802
1803
1804
1805
1806
1807
1808
1809
1810
1811
1812
1813
1814
1815
1816
1817
1818
1819
1820
1821
1822
1823
1824
1825
1826
1827
1828
1829
1830
1831
1832
1833
1834
1835
1836
1837
1838
1839
1840
1841
1842
1843
1844
1845
1846
1847
1848
1849
1850
1851
1852
1853
1854
1855
1856
1857
1858
1859
1860
1861
1862
1863
1864
1865
1866
1867
1868
1869
1870
1871
1872
1873
1874
1875
1876
1877
1878
1879
1880
1881
1882
1883
1884
1885
1886
1887
1888
1889
1890
1891
1892
1893
1894
1895
1896
1897
1898
1899
1900
1901
1902
1903
1904
1905
1906
1907
1908
1909
1910
1911
1912
1913
1914
1915
1916
1917
1918
1919
1920
1921
1922
1923
1924
1925
1926
1927
1928
1929
1930
1931
1932
1933
1934
1935
1936
1937
1938
1939
1940
1941
1942
1943
1944
1945
1946
1947
1948
1949
1950
1951
1952
1953
1954
1955
1956
1957
1958
1959
1960
1961
1962
1963
1964
1965
1966
1967
1968
1969
1970
1971
1972
1973
1974
1975
1976
1977
1978
1979
1980
1981
1982
1983
1984
1985
1986
1987
1988
1989
1990
1991
1992
1993
1994
1995
1996
1997
1998
1999
2000
2001
2002
2003
2004
2005
2006
2007
2008
2009
2010
2011
2012
2013
2014
2015
2016
2017
2018
2019
2020
2021
2022
2023
2024
2025
2026
2027
2028
2029
2030
2031
2032
2033
2034
2035
2036
2037
2038
2039
2040
2041
2042
2043
2044
2045
2046
2047
2048
2049
2050
2051
2052
2053
2054
2055
2056
2057
2058
2059
2060
2061
2062
2063
2064
2065
2066
2067
2068
2069
2070
2071
2072
2073
2074
2075
2076
2077
2078
2079
2080
2081
2082
2083
2084
2085
2086
2087
2088
2089
2090
2091
2092
2093
2094
2095
2096
2097
2098
2099
2100
2101
2102
2103
2104
2105
2106
2107
2108
2109
2110
2111
2112
2113
2114
2115
2116
2117
2118
2119
2120
2121
2122
2123
2124
2125
2126
2127
2128
2129
2130
2131
2132
2133
2134
2135
2136
2137
2138
2139
2140
2141
2142
2143
2144
2145
2146
2147
2148
2149
2150
2151
2152
2153
2154
2155
2156
2157
2158
2159
2160
2161
2162
2163
2164
2165
2166
2167
2168
2169
2170
2171
2172
2173
2174
2175
2176
2177
2178
2179
2180
2181
2182
2183
2184
2185
2186
2187
2188
2189
2190
2191
2192
2193
2194
2195
2196
2197
2198
2199
2200
2201
2202
2203
2204
2205
2206
2207
2208
2209
2210
2211
2212
2213
2214
2215
2216
2217
2218
2219
2220
2221
2222
2223
2224
2225
2226
2227
2228
2229
2230
2231
2232
2233
2234
2235
2236
2237
2238
2239
2240
2241
2242
2243
2244
2245
2246
2247
2248
2249
2250
2251
2252
2253
2254
2255
2256
2257
2258
2259
2260
2261
2262
2263
2264
2265
2266
2267
2268
2269
2270
2271
2272
2273
2274
2275
2276
2277
2278
2279
2280
2281
2282
2283
2284
2285
2286
2287
2288
2289
2290
2291
2292
2293
2294
2295
2296
2297
2298
2299
2300
2301
2302
2303
2304
2305
2306
2307
2308
2309
2310
2311
2312
2313
2314
2315
2316
2317
2318
2319
2320
2321
2322
2323
2324
2325
2326
2327
2328
2329
2330
2331
2332
2333
2334
2335
2336
2337
2338
2339
2340
2341
2342
2343
2344
2345
2346
2347
2348
2349
2350
2351
2352
2353
2354
2355
2356
2357
2358
2359
2360
2361
2362
2363
2364
2365
2366
2367
2368
2369
2370
2371
2372
2373
2374
2375
2376
2377
2378
2379
2380
2381
2382
2383
2384
2385
2386
2387
2388
2389
2390
2391
2392
2393
2394
2395
2396
2397
2398
2399
2400
2401
2402
2403
2404
2405
2406
2407
2408
2409
2410
2411
2412
2413
2414
2415
2416
2417
2418
2419
2420
2421
2422
2423
2424
2425
2426
2427
2428
2429
2430
2431
2432
2433
2434
2435
2436
2437
2438
2439
2440
2441
2442
2443
2444
2445
2446
2447
2448
2449
2450
2451
2452
2453
2454
2455
2456
2457
2458
2459
2460
2461
2462
2463
2464
2465
2466
2467
2468
2469
2470
2471
2472
2473
2474
2475
2476
2477
2478
2479
2480
2481
2482
2483
2484
2485
2486
2487
2488
2489
2490
2491
2492
2493
2494
2495
2496
2497
2498
2499
2500
2501
2502
2503
2504
2505
2506
2507
2508
2509
2510
2511
2512
2513
2514
2515
2516
2517
2518
2519
2520
2521
2522
2523
2524
2525
2526
2527
2528
2529
2530
2531
2532
2533
2534
2535
2536
2537
2538
2539
2540
2541
2542
2543
2544
2545
2546
2547
2548
2549
2550
2551
2552
2553
2554
2555
2556
2557
2558
2559
2560
2561
2562
2563
2564
2565
2566
2567
2568
2569
2570
2571
2572
2573
2574
2575
2576
2577
2578
2579
2580
2581
2582
2583
2584
2585
2586
2587
2588
2589
2590
2591
2592
2593
2594
2595
2596
2597
2598
2599
2600
2601
2602
2603
2604
2605
2606
2607
2608
2609
2610
2611
2612
2613
2614
2615
2616
2617
2618
2619
2620
2621
2622
2623
2624
2625
2626
2627
2628
2629
2630
2631
2632
2633
2634
2635
2636
2637
2638
2639
2640
2641
2642
2643
2644
2645
2646
2647
2648
2649
2650
2651
2652
2653
2654
2655
2656
2657
2658
2659
2660
2661
2662
2663
2664
2665
2666
2667
2668
2669
2670
2671
2672
2673
2674
2675
2676
2677
2678
2679
2680
2681
2682
2683
2684
2685
2686
2687
2688
|
> 1:1-9540 + hcv-half1.fasta
-GCCAGCCCCCTGATGGGGGCGACACTCCACCATAGATCACTCCCCTGTGAGGAACTACT
GTCTTCACGCAGAAAGCGTCTAGCCATGGCGTTAGTATGAGTGTCGTGCAGCCTCCAGGC
CCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCA
GGACGACCGGGTCCTTTCTTGGATCAATCCCGCTCAATGCCTGGAGATTTGGGCGTGCCC
CCGCGAGACTGCTAGCCGAGTAGTGTTGGGTCGCGAAAGGCCTTGTGGTACTGCCTGATA
GGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCACCATGAGCACAAATCCTAA
ACCTCAAAGAAAAACCAAACGTAACACCAACCGCCGCCCACAGGACGTCAAGTTCCCGGG
CGGTGGTCAGATCGTTGGTGGAGTTTACCTGTTGCCGCGCAGGGGCCCCAGGTTGGGTGT
GCGCGCGACTAGGAAGACTTCCGAGCGGTCACAACCTCGTGGAAGGCGACAACCTATCCC
CAAGGCTCGCCGGCCCGAGGGCAGGACCTGGGCTCAGCCCGGGTACCCTTGGCCCCTCTA
CGGCAATGAGGGCCTGGGGTGGGCAGAATGGCTCCTGTCACCCCGTGGCTCTCGGCCCAG
TTGGGGCCCCACGGACCCCCGGCGTAGGTCGCGTAATTTGGGTAAGGTCATCGATACCCT
CACATGCGGCTTCGCCGACCTCATGGGGTACATTCCGCTCGTCGGCGCCCCCCTGGGGGG
CGCTGCCAGGGCCCTGGCGCATGGCGTCCGGGTTCTGGAGGACGGCGTGAACTACGCAAC
AGGGAATCTCCCCGGTTGCTCTTTCTCTATCTTCCTCCTGGCTTTGCTGTCCTGTTTGAC
CATCCCAGCTTCCGCTTATGAAGTGCGCAACGTGTCCGGGGTGTACCATGTCACGAACGA
CTGCTCCAACTCAAGTATTGTGT----ATGGGGCGGCGGACATGATCATGCACACCCCCG
GGTGCGTGCCCTGCGTCCGGGAGAACAATTCCTCTCGTTGCTGGGTAGCGCTTACCCCCA
CGCTCGCGGCCAGGAACAGGAGCATCCCCACTACGACAATACGACGCCATGTCGATTTGC
TCGTTGGGGCGGCTGCTTTCTGCTCCGCCATGTACGTGGGGGATCTCTGCGGATCTGTCT
TCCTCGTCTCCCAGCTGTTCACTTTCTCACCTCGCCGGTATGAGACAGTACAAGACTGCA
ATTGCTCGCTCTATCCCGGCCACGTATCAGGTCATCGCATGGCTTGGGATATGATGATGA
ACTGGTCACCTACAGCAGCCTTGGTGGTATCGCAGCTACTCCGGATCCCACAAGCCGTCG
TGGACATGGTGACGGGGGCCCACTGGGGAGTCCTGGCGGGCCTTGCCTACTATTCCATGG
TGGGGAACTGGGCTAAGGTCTTGATTGTGATGCTACTCTTTGCCGGCGTTGACGGGAGAA
CCACCCATGTAACGGGGGGGCAAACAGGCCGGACCACCCTGGGCATTACGGCCATGTTTG
CGTTTGGCCCGCATCAAAAGCTCCAACTCATTAACACCAATGGCAGCTGGCACATCAACA
GGACCGCCCTGAACTGCAATGACTCTCTCAACACTGGGTTCCTAGCTGCGCTGTTTTACG
CACGCAAGTTCAACTCGTCTGGATGCCCAGAGCGCATGGCCAGCTGCCGCCCCATTGACA
AGTTTGTTCAGGGATGGGGTCCCAT------CACTCATGCTGTGCCTGACAACTTGGACC
AGAGGCCTTACTGCTGGCACTACGCGCCCCAACCGTGCGGTATCATACCCGCGTCACAGG
TGTGTGGTCCAGTGTATTGTTTCACCCCAAGCCCCGTTGTGGTGGGGACGACCGACCGTT
TCGGCGCCCCTACTTACACCTGGGGGGAGAATGAGACGGACGTGCTGCTCCTTAACAACA
CGCGGCCGCCGCAAGGCAACTGGTTCGGCTGTACATGGATGAATGGCACCGGGTTCGCCA
AGACGTGCGGAGGCCCCCCATGTAACATCGGGGGGGTCGGCAACAACACC------TTGA
CCTGCCCTACGGATTGCTTCCGCAAGCACCCCGAGGCCACTTACACCAAATGCGGCTCGG
GGCCCTGGTTGACGCCTAGGTGCATGGTTGACTACCCATACAGACTTTGGCACTACCCCT
GCACTGTCAACTTCACCATCTTTAAAGTTAGGATGTATGTGGGGGGTGTGGAGCACAGGC
TCACCGCCGCGTGCAATTGGACTCGAGGAGAGCGTTGTGACTTGGAGGACAGGGACAGAT
CAGAACTTAGCCCGCTGCTACTGTCCACGACAGAGTGGCAGGTGCTGCCCTGCTCCTTCA
CCACCCTACCGGCTTTGTCCACCGGTCTGATCCACCTCCATCAGAACATCGTGGACGTGC
AATACCTGTATGGCGTGGGGTCAGCGGTCGTCTCCA---TTGTCATCAAGTGGGAGTATA
TCCTGCTGCTCTTCCTTCTCCTCGCGGACGCACGCGTCTGCGCCTGCTTATGGATGATGC
TGCTGATAGCCCAGGCTGAGGCCGCTTTGGAAAACCTGGTGGTCCTCAATGCGGCG----
--TCCGTGGCCGGAGCGCATGGCACTCTCTCCTTCCTTGTGTTCTTCTGTGCTGCCTGGT
ACATCAAGGGTAGGCTGGTCCCTGGGGCGGCATATGCTTTTTACGGCGTATGCCCGCTGC
TCCTGCTCCTGCTGGCGTTACCACCACGAGCATACGCC----ATGGACCGGGAGATGGCT
GCATCGTGCGGGGGCGCGGTTTTCATAGGTCTAGTA---CTCTTGACCTTGTCGCCACAC
TACAAACCATTTCTCGCCAGGCTCATATGGTGGTTACAATACTTTATCACCAGGGCCGAG
GCGCTAGTACAGGTGTGGATCCCCCCCCTCAACGTTCGGGGGGGCCGCGATGCCATCATC
CTCCTCACGTGCGCGGTCCATCCGGGGCTGATTTTTGAAGTCACCAAAATCTTGCTCGCC
ATACTTGG-TCCGCTCAC---GATACTCCAGGCTGGCCTAACCAGAGTGCCGTACTTCGT
GCGCGCTCAAGGGCTCATTCGTGCGTGCATGTTGGTGCGGAAAGTCGCTGGGGGCCACTA
TGTTCAAATGGCTTTCATGAAGCTGGCCGCACTGACGGGCACGTACGTTTACAACCATCT
TACTCCGCTGCAGGACTGGGCCCACGCGGGCCTACGAGACCTTGCGGTGGCAGTTGAGCC
CGTCGTCTTCTCTGACATGGAGACCAAGATCATCACCTGGGGGGCAGACACCGCGGCGTG
TGGGGACATCATCTCAGGTCTACCCGTCTCCGCCCGAAGGGGGAGGGAGATACTTCTGGG
ACCGGCCGACAGTTTTGAGGGGCGGGGGTGGCGACTCCTTGCCCCTATCACGGCCTACTC
CCAACAGACGCGGGGCCTTCTTGGCAGTATCATCACCAGCCTCACAGGTCGGGATAAGA-
--ACCGGGTCGAGGGGGAGGTTCAAGTGGTCTCCACCGCAACGCAATCTTTCCTGGCGAC
CTGTATCAACGGCGTGTGCTGGACTGTCTACCATGGTGCCGGCTCAAAGACCCTAGCCGG
GCCAAAGGGTCCAATTACCCAAATGTACACCAATGTAGACCAGGACCTCGTCGGCTGGCC
GGCGCCCTCCGGGGCGCGTTCCCTGACATCATGCACCTGCGGCAGTTCGGACCTTTACTT
GGTCACGAGACATGCTGACGTCATTCCGGTGCGCCGGCGGGGCGACAGCAGGGGGAGCCT
ACTTTCCCCCAGGCCTGTCTCCTACTTGAAGGGCTCCTCGGGTGGTCCGCTGCTCTGCCC
CTCAGGGCATACTGTGGGCATCTTCCGGGCTGCTGTGTGCACCCGGGGGGTTGCGAAGGC
GGTGGACTTTATACCCGTAGAGTCTATGGAAACCACTATGCGGTCTCCGGTCTTCACGGA
CAACTCATCTCCCCCGGCCGTACCGCAGACATTCCAAGTGGCCCATCTACACGCCCCCAC
CGGCAGCGGTAAGAGCACTAAAGTGCCGGCTGCATATGCAGCCCAAGGGTATAAGGTACT
CGTCCTGAACCCGTCCGTTGCCGCCACCCTAGGTTTTGGGGCGTATATGTCTAAGGCACA
TGGTATTGACCCTAACATTAGAACTGGGGTAAGGACCATCACCACGGGCGCCCCCATCAC
GTATTCCACCTATGGCAAGTTCCTTGCCGACGGTGGTTGTTCTGGGGGCGCCTATGACAT
CATAATATGTGATGAGTGCCACTCAACTGACTCGACTTCCATCTTGGGCATTGGCACAGT
CCTGGACCAAGCGGAGACGGCTGGAGCGCGGCTCGTCGTGCTCGCCACCGCTACGCCTCC
GGGATCGGTCACCGTGCCACACCCCAACATCGAGGAGGTGGCCTTGTCCAATACTGGAGA
GATCCCCTTCTATGGCAAAGCCATCCCCATCGAGACCATCAAGGGGGGAAGGCATCTCAT
CTTCTGTCACTCCAAGAAGAAATGTGATGAGCTCGCCGCAAAGCTGTCGGCCCTTGGAAT
CAATGCTGTAGCGTACTACCGGGGCCTGGATGTGTCCGTCATACCGACAAGCGGAGACGC
CGTTGTCGTGGCAACAGACGCTCTCATGACGGGCTATACCGGCGACTTTGACTCGGTGAC
CGACTGCAACACGTGTGTCACCCAGACAGTCGACTTCAGCTTGGACCCTACCTTCACCAT
CGAAACGACAACCGTGCCTCAAGACTCGGTGTCGCGCTCGCAGCGGCGAGGCAGGACTGG
TAGGGGCAGAGGGGGCATATACAGGTTT--------------------------------
------------------------------------------------------------
---GTGATTCCA--GGGGAGCGGCCCTCAGGCATGTTCGATTCTTCGGTCCT--------
-----------------------------GTGTGAGTGTTATGACGCGGGCTGCGCTTGG
TATGAGCTCACGCCCGCCGAGACCACGGTCAGGTTGCGGGCTTACCTGAATACACCAGGG
TTGCCCGTCTGCCAGGACCACCTGGAGTTCTGGGAGGGCGTCTTCACAGGCCTCACCCAC
ATAGATGCCCACTTCTTGTCCCAGACTAAACAGGCAGGAGACAACTTCCCCTACCTGGTA
GCATACCAGGCTACAGTGTGCGCCAGGGCCCAGGCTCCACCTCCATCGTGGGATCAAATG
TGGAAGTGTCTCATACGGCTAAAGCCGACGCTACACGGGCCAACACCCCTGTTGTATAGG
CTAGGGGCCGTTCAAAACGAGGTCACCCTCACACACCCCATAACCAAATACATCATGACA
TGCATGTCGGCTGACCTAGAGGTCGTCACTAGCACTTGGGTGCTGGTGGGCGGGGTCCTC
GCAGCCCTGGCCGCGTACTGCCTAACAACGGGCAGCGTGGTCATTGTGGGCAGGAT-CAT
TTTGTCTGGGAGGCCGGCTATCATCCCCGACAGGGAAGTTCTCTACCGGGAGTTCGATGA
AATGGAAGAGTGCGCCTCACACCTCCCTTACATCGAACAGGGAATACAGCTCGCCGAGCA
ATTCAAGCAGAAGGCGCTCGGGTTGCTGCAAACGGCCACCAAGCAAGCGGAGGCTGCCGC
CCCCGTGGTGGAGTCCAAGTGGCGTACCCTAGAGGCCTTCTGGGCGAAGCACATGTGGAA
TTTCATCAGCGGGATACAGTACCTAGCAGGCTTGTCCACTCTGCCTGGGAATCCCGCGAT
AGCATCATTGATGGCATTCACAGCCTCTATCACCAGCCCGCTCACCATCCAACA-TACCC
TCCTGTTTAACATCTTGGGGGGGTGGGTGGCCGCCCAACCCGCCCCCCCCAGCGCTGCTT
CAGCTTTCGTAGGCGCTGGCATTGCCGGCGCGGCTGTTGGTAGCATAGGTGTTGGGAAGG
TGCTTGTGGACGTTTTGGCGGGTTATGGAGCAGGGGTGGCAGGCGCTCTCGTGGCCTTTA
AGGTCATGAGCGGTGAAGTGCCCTCCACTGAGGACCTGGTCAACTTACTCCTTGCCATCC
TCTCTCCTGGTGCCCTGGTCGTCGGAGTTGTGTGCGCGGCAATACTGCGTCGGCATGTGG
GCCCAGGGGAGGGGGCTGTGCAGTGGGTGAACCGGTTGATAGCGTTCGCTTCGCGGGGTA
ACCATGTTTCCCCCACGCACTATGTGCCCGAGAGCGACGCTGCAGCGCGTGTCACCCAGA
TTCTCTCCAGCCTTACCATCACTCAGCTGTTGAAGAGGCTCCACCAGTGGATTAATGAGG
ACTGCTCCACACCATGCTCCGGCTCGTGGCTCAGGGATGTTTGGGACTGGATATGCACGG
TGTTGACCGACTTCAAGACCTGGCTCCAGTCCAAGCTCCTGCCGCGGTTGCCAGGAGTTC
CTTTCCTTTCATGCCAACGTGGGTACAGGGGAGTCTGGCGAGGGGATGGCATCATGCACA
CCACCTGCCCATGTGGAGCACAAATCACTGGACATGTCAAGAACGGCTCCATGAGGATTG
TTGGGCCAAAAACCTGTAGCAACACGTGGCATGGAACATTCCCCATCAACACATACACCA
CGGGCCCCTGCACACCCTCCCCAGCGCCAAAC--TATTCCAAGGCGTTGTGGCGGGTGGC
TGCTGAGGAGTACGTGGAGGTCACGCGGGTGGGGGATTTCCATTACGTGACGGGCATGAC
CACTGACAACGTAAAATGCCCATGCCAGGTTCCGGCCCCCGAATTCTTTACAGAACTGGA
CGGGGTGCGGCTACACAGGTACGCTCCGGCGTGCAAACCTCTCCTACGGGATGAGGTCAC
ACTCCAGGTCGGGCTCAACCAATACCCGGTCGGGTCACAGCTCCCATGTGAGCCCGAACC
GGATGTAACAGTGCTCACCTCCATGCTCACCGACCCCTCCCACATCACAGCAGAGACGGC
TAAGCGTAGGCTGGCTAGGGGGTCTGGGGTCTCCCCTTCCTTGGCCAGCTCTTCGGCTAG
CCAGTTGTCTGCGCCTTCCTTGAAGGCGACATGCACTACCCATCATGACTCCCCAGATGC
TGACCTCATTGAGGCCAACCTCCTGTGGCGGCAGGAGATGGGCGGGAACATCACCCGCGT
GGAGTCAGAGAATAGGGTAGTAATTCTAGACTCTTTTGACCCGCTTCGAGCGGAAGAGGA
TGAGAGGGAAATATCCGTTGCGGCGGATATCTTGCGGAAAACCAAGAAATTTCCCTCAGC
GATGCCCATAT--------------------------------------GGGCACGCCCG
GACTACAACCCACCACTGCTGGAGTCTTGGAAGAACCCGGACTACGTCCCTCCGGTGGTA
CACGGGTGCCCATTGTCACCTACCAGGGCCCCTCCAATACCGCCTCCACGGAGGAAGAGG
ACAGTTGTCTTGACAGAATCCGCCGTGTCTTCTGCCTTGGCGGAGCTTGCTACAAAGACC
TTCGGCAG-----CTCCGAATCGTCGG----------CCGTCGACAGCGGCACA-GCGAC
CGCCCCCCCCGGCCAGTCCTCTGATGACGGTGGTACGGGATCCGACGTTGAGTCGTACTC
CTCCATGCCCCCCCTTGAGGGGGAGCCGGGGGACCCCGATC-------------------
---------------------------------TCAGCGAC---------GGGTCTTGGT
CTACTGTAAGCGAGGAGGCTAGCGAGGACGTCGTCTGCTGCTCAATGTCCTACACGTGGA
CGGGTGCCCTGATCACGCCATGCGCCGCGGAGGAGAGCAAGCTGCCCATCAATGCGCTGA
GCAACTCTTTGCTGCGTCACCACAACATGGTCTATGCCACAACATCCCGCAGCGCAAGCC
AGCGGCAGAAGAAGGTCACCTTTGACAGACTGCAAGTCCTGGACGACCACTACCGGGACG
TGCTCAAGGAGATGAAGGCGAAGGCGTCCACAGTTAAGGCTAAGCTTCTATCCGTAGAAG
AAGCCTGCAAGCTGACGCCCCCACATTCGGCCAGATCCAAGTTTGGCTATGGGGCAAAGG
ACGTCCGGAACCTGTCCAGCAAGGCCGTTAACCACATCCACTCCGTGTGGAAGGACTTGC
TGGAAGACGATGAAACACCAATCAATACCACCATCATGGCAAAAAATGAGGTCTTCTGTG
TTCAACCAGAAAAAGGAGGCCGCAAGCCAGCTCGCCTTATCGTATTCCCAGATTTAGGGG
TCCGCGTGTGCGAGAAAATGGCCCTCTACGACGTGGTCTCCACTCTTCCTCAGGCCGTGA
TGGGCTCCTCATACGGGTTTCAGTACTCTCCTGGACAGCGGGTCGAGTTCTTGGTGAATG
CCTGGAAATCAAAGAAGAACCCCATGGGCTTCGCATATGACGCCCGCTGTTTTGACTCAA
CGGTCACCGAGAATGATATCCGTGTTGAGGAGTCAATTTACCAATGTTGTGACTTAGCCC
CCGAGGCCAGACAGGCCATAAGGTCGCTCACAGAGCGGCTTTACATCGGGGGCCCCCTGA
CTAACTCAAAAGGGCAGAACTGCGGTTATCGCCGGTGCCGCGCCAGCGGCGTGCTGACGA
CCAGGTGCGGTAATACCCTTACATGTCACTTGAAGGCCTCTGCAGCCTGTCGAGCTGCAA
AGCTCCAGGATTGCACGATGCTCGTGTGCGGAGATGACCTTGTCGTTATCTGTGAAAGCG
CGGGAACCCAGGAGGATGCGGCGAGCCTACGAGTCTTCACGGAGGCTATGACTAGGTATT
CCGCCCCCCCCGGGGACCCGCCCCAACCGGAGTACGACTTGGAGCTAATAACATCATGCT
CCTCCAACGTGTCGGTCGCGCACGATGCATCTGGCAAACGGGTATACTACCTCACCCGCG
ACCCCACCACCCCCCTTGCGCGGGCTGCGTGGGAGACAGCTAGGCACACTCCAGTCAACT
CCTGGCTAGGCAACATTATCATGTATGCGCCCACCTTATGGGCAAGAATGATTCTGATGA
CTCACTTCTTCTCCATCCTTCTAGCTCAGGAGCAACTTGAAAAAGCCCTAGATTGTCAGA
TCTACGGGGCCACTTACTCCATTGAACCACTTGACCTACCTCAGATCATTCAGCGACTCC
ATGGTCTTAGCGCATTTTCACTCCATAGTTACTCTCCAGGTGAGATCAATAGGGTGGCTT
CATGCCTCAGGAAACTTGGGGTACCGCCCTTGCGAGTCTGGAGACATCGGGCCAGAAGTG
TCCGCGCTAAG--------CTACTGTCCCAAGGGGGGAGGGCCGCCACTTGTGGCAAATA
CCTCTTCAATTGGGCAGTAAGGACCAAGCTCAAACTCACTCCAATTCCGGCTG-CGTCCC
AGTTGGACTTGTCCGGCTGGTTCGTTGCTGGTTACAGCGGGGGAGACATATAATCACAGC
CTG-TCTCGTGCCCGACCCCGCTGGTTCATGTG-GTGCCTACTCCTACTCTCTGTAGGGG
TAGGCATCTACTTGCTCCCCAACCGGT-GAACGGGG------AGCTAAACACTCCA-GGC
CA---ATAGGCCGT------------------------CCTGTTTTTTTTTTTT------
------------------------------------------------------------
------------------------TTTTTTGGTGGCTCCATCTTAGCCCTAGTCACG-GC
TAGCTGTGAAAGGTCCGTGAGC-CGCATGACTAGCAGAGAGTGCTGATACTGGCCTCTCT
GCAGATCATGT--
> 2:1-9656 + hcv-half1.fasta
-GCCCGCCCCCTGATGGGGGCGACACTCCGCCATGAATCACTCCCCTGTGAGGAACTACT
GTCTTCACGCAGAAAGCGTCTAGCCATGGCGTTAGTATGAGTGTCGTACAGCCTCCAGGC
CCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCG
GAAAGACTGGGTCCTTTCTTGGATAAA-CCCACTCTATGTCCGGTCATTTGGGCGTGCCC
CCGCAAGACTGCTAGCCGAGTAGCGTTGGGTTGCGAAAGGCCTTGTGGTACTGCCTGATA
GGGTGCTTGCGAGTGCCCCGGGAGGCCTCGTAGACCGTGCACCATGAGCACAAATCCTAA
ACCTCAAAGAAAAACCAAAAGAAACACAAACCGCCGCCCACAGGACGTCAAGTTCCCGGG
TGGCGGCCAGATCGTTGGCGGAGTTTACTTGCTGCCGCGCAGGGGCCCCAGGTTGGGTGT
GCGCGCGACAAGGAAGACTTCCGAGCGATCCCAGCCGCGTGGGAGACGCCAGCCCATCCC
GAAAGATCGGCGCTCCACCGGCAAGTCCTGGGGAAAGCCAGGATATCCTTGGCCTCTGTA
TGGAAACGAGGGTTGCGGTTGGGCAGGTTGGCTCCTGTCCCCTCGCGGGTCTCGTCCTAC
TTGGGGCCCCAGCGACCCCCGGCATAGATCACGCAATTTGGGCAGGGTCATCGACACCAT
CACGTGTGGTTTTGCCGATCTCATGGGGTACATCCCTGTCGTTGGCGCCCCTGTCGGAGG
CGTCGCCAGAGCTCTGGCACACGGTGTTAGGGTCCTGGAAGACGGGATAAATTATGCAAC
GAGGAATTTACCCGGTTGCTCTTTTTCTATCTTCTTACTTGCTCTTCTGTCGTGCGTTAC
AGTGCCAGTGTCTTCAGTGGAAATCAGGAACATCAGCACTAGCTACTACGCCACTAATGA
TTGCTCGAACAACAGCATCACCT----GGCAGCTCACTAACGCAGTTCTCCATCTTCCTG
GATGTGTCCCATGCGAGAATGACAATGGTACCTTGCGCTGCTGGATACAAGTAACACCTA
ATGTGGCTGTAAAACACCGCGGTGCACTCACTCACAACCTGCGAGCACACGTCGATGTGA
TCGTAATGGCAGCTACGGTCTGCTCGGCTCTGTACGTGGGAGATGTGTGTGGGGCCGTGA
TGATCGTGTCGCAGGCTCTTATAGTATCGCCAGAACGCCACAACTTTACCCAAGAGTGCA
ACTGTTCCATCTACCAAGGTCATATCACTGGCCAGCGCATGGCATGGGACATGATGCTGA
ATTGGTCACCAACTCTTACCATGATCCTCGCCTACGCTGCTCGTGTTCCCGAGTTGGTCC
TGGAAATTGTCTTCGGCGGCCATTGGGGTGTGGTATTTGGCTTGGCCTATTTCTCCATGC
AGGGAGCGTGGGCCAAGGTCATTGCCATCCTCCTTCTTGTTGCGGGAGTGGATGCGAC--
-CACCTATTCCACCGGCGCGACAGTGGGCCGGACCGTTGGGAGCTTTGCTGGCCTCTTTA
AGCTTGGTGCCCAACAGAACGTCCAATTAATCAATACCAACGGCAGCTGGCACATAAACC
GGACCGCCCTCAACTGCAATGACAGCTTGCACACGGGTTTCATGGCCGCCCTGTTTTATG
CCAACAAATTCAACAGCTCTGGCTGCCCCGAGCGTTTGTCTTCCTGCCGTGGGCTGGATG
ATTTTCGTATCGGGTGGGGAACCTTGGAATACGAGACCAACGTCACCAATGTTGAAGACA
TGAGGCCGTACTGCTGGCATTACCCCCCAAAGCCATGCGGTATCGTCCCAGCTCAGTCGG
TTTGCGGGCCGGTCTACTGCTTTACTCCTAGCCCTGTTGTCGTGGGCACCACCGACAGGC
AGGGCGTACCCACCTACAACTGGGGGGACAATGAGACCGATGTCTTCCTGCTAAATAGCA
CAAGACCCCCGCGAGGAGCCTGGTTCGGCTGCACTTGGATGAACGGGACTGGGTTCACTA
AGACATGCGGAGCACCACCTTGCCGCATTAGGAAGGATTTCAACAGCACTCTCGATCTAT
TGTGCCCTACAGACTGTTTTAGGAAGCACCCAGATGCTACCTATGTTAAGTGTGGAGCAG
GGCCCTGGTTGACCCCCAGGTGCCTGATAGACTACCCTTACAGACTGTGGCATTATCCAT
GCACCGTAAATTTCACCATCTTCAAGGTGCGGATGTATGTAGGGGGGGTGGAGCATAGAT
TCTCTGCAGCATGCAATTTCACACGCGGAGACCGCTGCAGATTGGAAGATAGGGATAGGG
GTCAGCAGAGTCCACTGCTGCACTCCACCACTGAGTGGGCGGTGTTGCCATGCTCCTTCT
CCGACCTACCGGCACTATCTACTGGCCTGTTGCACCTTCACCAAAACATCGTGGACGTGC
AGTACCTCTATGGACT---TTCTCCAGCTGTTACGAAATACATCGTAAAGTGGGAATGGG
TGGTCCTCCTTTTCCTGTTGCTGGCAGACGCCAGGATCTGTGCATGCCTTTGGATGCTCA
TCATACTGGGCCAAGCTGAGGCGGCGCTTGAGAAGCTCATCATCTTGCACTCCGCT----
--AGCGCTGCTAGTGCCAATGGGCCGCTGTGGTTCTTCATCTTTTTTACGGCGGCCTGGT
ACTTAAAGGGCAGAGTGGTCCCCGCGGCCACATACTCTGTTCTCGGCTTGTGGTCCTTTC
TCCTTCTAGTCTTGGCCCTGCCGCAGCAGGCTTACGCCTTGGACGCCGCTGAACAAGGGG
AGCT-------GGGGCTGGTCATATTAATGATCATATCCATCTTTACTCTTACCCCAGCA
TACAAGATTCTCCTGAGCCGTTCAGTGTGGTGGCTGTCCTACATGCTGGTCCTGGCCGAG
GCTCAGGTTCAGCAATGGGTTCCCCCCCTGGAGGCCCGAGGGGGGCGTGACGGGATCATC
TGGGTGGCTGTCATCCTACACCCACACCTTGTGTTTGAGGTCACGAAGTGGTTATTAGCA
ATCCTGGGGTCTGCCTAC----CTCCTTAAAGCGTCTCTACTACGGGTGCCATACTTTGT
GAGGGCTCACGCTCTGCTACGAGTGTGTACCCTGGTGAGACATCTTGCGGGAGCTAGGTA
TATCCAGATGCTGTTGATCACCATGGGCAGGTGGACCGGCACTTACATCTATGACCACCT
CTCCCCCTTGTCAACTTGGGCGGCCCAGGGTTTGCGGGACCTGGCGGTTGCCGTGGAGCC
TGTCGTGTTCAGCCCAATGGAGAAGAAGGTCATCGTGTGGGGGGCTGAGACAGTGGCATG
TGGAGACATCCTGCATGGCCTCCCGGTTTCCGCGAGGCTAGGTAGGGAAGTTCTGCTCGG
CCCTGCCGATGGCTACACCTCCAAGGGGTGGAAGCTCTTAGCCCCCATCACTGCCTACAC
TCAGCAGACTCGTGGCCTCCTGGGTGCCATTGTGGTCAGCCTAACTGGCCGCGACAAAAA
TGAGCAGGCC---GGGCAGGTCCAGGTTCTGTCCTCCGTCACACAATCCTTCTTGGGGAC
ATCTATTTCGGGGGTTCTCTGGACGGTATATCACGGGGCTGGTAACAAGACCTTGGCTAG
CCCCAGAGGACCAGTCACCCAGATGTACACCAGCGCAGAGGGGGACCTCGTGGGATGGCC
TAGTCCCCCCGGGACTAAGTCATTAGACCCCTGTACCTGCGGGGCCGTGGACCTCTACCT
GGTCACCCGAAACGCTGACGTCATTCCGGTCCGGAGGAAAGATGATAGACGGGGTGCATT
GCTGTCGCCAAGGCCTCTCTCAACCCTCAAAGGATCATCCGGAGGACCCGTGCTCTGCCC
TAGGGGACACGCCGTGGGCTTGTTCAGAGCGGCCGTGTGCGCCAGGGGTGTGGCCAAATC
TATTGACTTCATCCCGGTTGAATCTCTCGACATCGCTAGACGGACGCCCAGTTTTTCTGA
CAACAGCACGCCACCAGCTGTGCCCCAAACTTACCAGGTGGGCTACCTGCACGCACCGAC
AGGTAGCGGGAAGAGCACCAAGGTCCCTGCCGCATATACCAGTCAGGGGTATAAAGTGCT
CGTGCTAAATCCCTCTGTCGCGGCCACACTTGGTTTTGGGGCCTACATGTCCAAAGCCCA
CGGGATCAACCCCAACATCAGAACTGGAGTACGGACTGTGACCACCGGGGATTCTATCAC
CTACTCCACTTATGGCAAGTTTCTCGCGGATGGAGGCTGCTCAGCCGGCGCCTATGATAT
CATCATCTGCGACGAGTGCCATTCAGTGGACGCTACCACCATCCTTGGCATCGGAACAGT
CCTTGACCAGGCTGAGACCGCAGGTGTTAGGCTGGTGGTTCTAGCCACAGCCACGCCCCC
CGGTACGGTGACAACTCCCCACGCTAACATAGAGGAGGTGGCCCTTGGTCATGAGGGCGA
GATCCCTTTTTATGGCAAGGCTATCCCTCTAGCTTCCATCAAGGGGGGCAGACACCTAAT
ATTCTGCCATTCAAAGAAGAAGTGCGATGAGCTCGCAGCAGCCCTTCGGGGCATGGGCGT
CAATGCCGTCGCCTACTACAGGGGTCTCGACGTCTCCGTTATACCAACTCAAGGGGACGT
AGTGGTCGTCGCCACAGATGCCCTAATGACTGGATACACCGGTGACTTTGACTCTGTCAT
CGACTGCAACGTTGCAGTCACTCAGATTGTTGACTTTAGCCTAGACCCGAC---------
------------------------------------------------------------
----------------------------CTTTACCATCACCACTCAGACTGTCCCTCAGG
ACGCTGTCTCCCGTAGTCAACGTAGAGGGAGAACTGGGAGGGGGCGATTGGGCACTTACA
GGTATGTCTCATCAGGCGAAAGGCCGTCTGGGATGTTCGACAGCGTAGTGCT--------
-----------------------------CTGTGAGTGCTATGATGCCGGGGCAGCTTGG
TACGAGCTTACGCCTGCTGAGACTACGGTAAGACTCCGGGCTTATTTCAACACGCCCGGC
TTACCCGTGTGTCAAGACCACCTGGAGTTCTGGGAAGCGGTCTTCACAGGTCTCACACAC
ATCGATGCCCACTTCCTCTCCCAGACGAAGCAAGGAGGAGATAACTTTGCGTATCTAACG
GCCTATCAGGCCACGGTATGCGCTAGGGCAAAGGCCCCTCCTCCTTCGTGGGACGTGATG
TGGAAATGTCTAACTAGGCTGAAACCTACACTGACTGGTCCTACCCCCCTCCTATACCGC
TTGGGTGCCGTGACCAACGAGATTACCCTGACCCATCCCGTGACGAAATATATCGCCACG
TGCATGCAAGCCGACCTCGAGGTCATGACAAGCACATGGGTCCTGGCTGGGGGGGTGCTA
GCCGCCGTGGCAGCTTACTGCCTGGCGACCGGCTGCATCTCCATCATTGGCCGCATACAC
CTGAATGATCAGGTG-GTTGTGGCCCCTGACAAGGAAATCTTATATGAGGCCTTTGATGA
GATGGAAGAATGCGCCTCCAAAGCCGCCCTCATTGAGGAAGGGCAGCGGATGGCGGAGAT
GCTTAAATCTAAGATACTAGGCCTCCTACAACAGGCCACAAAACAGGCCCAGGACATACA
GCCAGCCATGCAGTCATCATGGCCCAAGATCGAACAATTTTGGGCCAGACACATGTGGAA
CTTCATCAGTGGCATACAGTACCTGGCGGGACTCTCCACCTTACCGGGAAATCCCGCAGT
GGCATCAATGATGGCTTTCAGCGCCGCATTAACTAGTCCACT-GCCCACCAGCACCACCA
TCCTCTTGAACATCATGGGGGGGTGGTTGGCCTCCCAGATTGCCCCCCCTGCCGGAGCCA
CCGGCTTCGTTGTCAGTGGCCTAGTGGGGGCAGCAGTCGGAAGTATAGGCCTGGGTAAGA
TATTGGTGGACGTCCTAGCCGGGTACGGTGCAGGCATTTCAGGGGCCCTCGTGGCTTTTA
AGATCATGAGCGGCGAGAAGCCCTCGGTTGAAGACGTCGTGAATCTCCTACCTGCTATTT
TGTCCCCTGGCGCCTTGGTAGTGGGAGTCATTTGCGCAGCAATCTTGCGCCGCCACGTCG
GCCAGGGAGAGGGGGCGGTCCAGTGGATGAACAGACTGATCGCCTTTGCCTCTAGGGGAA
ACCATGTTGCCCCTACTCACTACGTGGCGGAGTCTGACGCCTCGCTGCGCGTGACGCAGG
TGTTAAGCTCACTCACAATTACCAGCTTGCTTAGGAGACTACACGCCTGGATCACTGAAG
ATTGCCCAGTCCCATGTTCGGGGTCTTGGCTCCGGGACATTTGGGAGTGGGTATGTTCCA
TTCTCACAGACTTTAAGAACTGGCTGTCTGCAAAATTGCTCCCCAAAATGCCCGGCCTCC
CCTTCATCTCTTGCCAAAAGGGATACAGGGGTGTGTGGGCTGGCACGGGAGTCATGACTA
CTCGGTGTTCATGCGGAGCAAACATCTCGGGCCACGTCCGCTTGGGCACCATGAAAATAA
CAGGCCCGAAGACCTGCCTAAACATGTGGCAGGGAACCTTCCCCATCAATTGTTACACAG
AAGGGCCTTGTGTGCCAAAACCCCCTCCTAAT--TATAAGACCGCTATTTGGAGGGTGGC
AGCGTCGGAGTACGTTGAGGTCACGCAGCATGGCTCTTTCTCGTATGTAACGGGGTTAAC
TAGTGACAACCTTAAGGTCCCTTGCCAGGTACCAGCTCCAGAATTCTTCTCTTGGGTGGA
CGGGGTGCAGATACACCGATTTGCCCCCACTCCAGGTCCCTTCTTTCGGGATGAGGTAAC
GTTCACCGTAGGCCTCAATTCCCTCGTGGTCGGTTCTCAGCTCCCTTGCGACCCTGAGCC
GGACACCGAGGTATTGGCCTCCATGTTGACAGACCCGTCCCACATTACCGCGGAGACGGC
AGCCAGGCGACTGGCCAGGGGATCT------CCCCCCTCACAGGCCAGCTCCTCAGCGAG
CCAGCTGTCCGCCCCGTCCTTGAAGGCTACCTGTACCACCCATAAAACGGCATATGATTG
TGACATGGTGGATGCCAACCTTTT------------CATGGGAGGCGATGTGACCCGAAT
TGAGTCCGACTCCAAGGTGATCGTTCTTGACTCCCTCGATTCCATGACTGAGGTAGAGGA
TGATCGTGAGCCTTCTGTACCATCAGAGTACTTGACCAGGAGGAGAAAGTTCCCACCGGC
ACTACCTCCCT--------------------------------------GGGCCCGTCCA
GACTACAACCCTCCTGTGATCGAGACATGGAAGAGGCCGGACTATGAACCACCCACTGTC
CTAGGCTGCGCCCTACCCCCCACACCTCAGGCACCAGTGCCCCCACCTCGGAGGCGCCGC
GCCAGAGTCCTGACTCAGGACAATGTGGAGGGGGTCCTTAGGGAGATGGCAGACAAAG--
--TGCTCAGCCCTCTCCAAGACACCAATGACTCCGGTCACTCCACTGGGGCGGATACCGG
AGGAGACAGCGTCCAGCAGCCCTCTGGCGAGACTGCCGCTTCAGATGCGGGATCACTGTC
CTCCATGCCTCCCCTTGAGGGGGAGCCGGGGGACCCTGACCTGGAGTTTGAGCCAGC-GA
GATCCGCTCCCCCTTCCGAGGGGGAGTGTGAGGTCATCGACTCGGACTCTAAGTCGTGGT
CTACAGTCTCCGATCAAG---AGGATTCTGTTATCTGCTGCTCCATGTCATACTCCTGGA
CAGGAGCCCTCATAACACCATGTGGGCCCGAGGAGGAGAAGTTGCCAATCAGCCCTCTGA
GTAACTCGCTTATGCGGTTCCATAACAAGGTGTACTCCACAACCTCGAGGAGTGCTTCTC
TGAGGGCAAAGAAGGTGACCTTTGACAGGGTGCAGGTGCTGGACGCACACTATGACTCAG
TCTTGCAGGACGTTAAGCGGGCTGCCTCTAAGGTTAGTGCGAGGCTCCTCTCAGTAGAGG
AAGCCTGCGCGTTGACCCCGCCCCACTCCGCCAAATCACGATACGGATTTGGGGCAAAGG
AGGTGCGCAGCTTATCCAGGGGGGCCGTTAACCACATCCGGTCCGTGTGGGAGGACCTCC
TGGAAGACCAACATACTCCAATTGACACAACTGCCATGGCCAAAAATGAGGTGTTCTGTA
TTGATCCCGCCAAGGGCGGAAAAAAGCCAGCTCGCCTCATCGTATACCCTGACCTTGGGG
TCAGGGTGTGCGAAAAGATGGCCCTTTATGACATTGCACAAAAGCTTCCCAAGGCAATAA
TGGGGCCGTCCTATGGGTTCCAATACTCTCCTGCAGAACGGGTCGATTTTCTCCTCAAAG
CTTGGGGAAGTAAGAAGGACCCAATGGGGTTCTCATATGACACCCGCTGCTTCGACTCAA
CCGTCACGGAGAGGGACATAAGAACAGAAGAATCCATATATCAGGCTTGCTCCCTGCCTC
AAGAGGCTAGGACTGTCATACACTCGATCACTGAGAGACTCTACGTAGGAGGGCCCATGA
CAAACAGCAAAGGGCAATCCTGCGGTTACAGGCGTTGCCGCGCAAGCGGTGTCTTCACTA
CCAGCATGGGGAACACCATGACATGCTACATTAAAGCTCTTGCAGCATGTAAAGCTGCAG
GGATCGTAGATCCTACTATGCTGGTGTGTGGAGACGACCTGGTTGTCATCTCGGAGAGCC
AAGGCAATGAGGAGGACGAGCGAAACCTGAGAGCTTTCACGGAAGCTATGACCAGGTATT
CCGCCCCTCCCGGTGACCTTCCCAGACCGGAATATGACTTGGAGCTTATAACATCCTGCT
CCTCAAACGTATCGGTAGCGCTGGACTCTCGGGGTCGCCGCCGGTACTTCTTAACCAGAG
ACCCTACCACTCCAATCACCCGAGCTGCTTGGGAAACAGTAAGACACTCCCCTGTCAATT
CTTGGCTGGGCAACATCATCCAATACGCCCCTACAATCTGGGTCCGGATGGTCATAATGA
CCCACTTTTTCTCCATACTACTGGCCCAGGACACTCTGAACCAGAATCTCAATTTCGAGA
TGTACGGGGCAGTATACTCGGTCAATCCACTAGACCTGCCGGCCATAATTGAAAGGCTAC
ATGGGCTTGACGCCTTCTCATTGCACACATACTCTCCCCACGAACTCTCACGGGTGGCAG
CGACTCTCAGGAAACTTGGAGCGCCTCCCCTTAGAGCGTGGAAGAGTCGGGCGCGTGCTG
TGAGGGCCTCA--------CTCATCATCCAGGGAGGGAGGGCGGCCACTTGTGGACGCTA
CCTCTTCAACTGGGCGGTGAAGACAAAGCTCAAACTCACTCCATTGCCCGAGAGCGAGCC
GCCTAGATTTATCCGGGTGGTTCACCGTGGGCGCCGGCGGGGGCGACATCT-TTCACAGC
GTG-TCGCATGCCCGACCCCGCCTATTACTCCT-TTGCCTACTCCTACTTAGCGTAGGAG
TAGGCATCTTTTTACTCCCCGCTCGGTAGAGCGGCAAACCCTAGCT--ACACTCCATAGC
TA---GTT-TTCTT------------------------TTTTTTTTTTTTTTTTTTATTT
TGTTTTTTTTTTTTTTCCTCTTTTTCCGTATTTTTTTTTT--------------------
-----------------TTCCTCTTTTCTTGGTGGCTCCATCTTAGCCCTAGTCACG-GC
TAGCTGTGAAAGGTCCGTGAGC-CGCATGACT-GCAGAGAGTGCCGTAACTGGTCTCTCT
GCAGATCATGT--
> 3:1-9489 + hcv-half1.fasta
TGCCCG-CCCCTAAATGGGGCGACACTCCGCCATGAATCACTCCCCTGTGAGGAACTACT
GTCTTCACGCAGAAAGCGTCTAGCCATGGCGTTAGTATGAGTGTCGTACAGCCTCCAGGC
CCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCG
GGAAGACTGGGTCCTTTCTTGGATAAA-CCCACTCTATGCCCGGCCATTTGGGCGTGCCC
CCGCAAGACTGCTAGCCGAGTAGCGTTGGGTTGCGAAAGGCCTTGTGGTACTGCCTGATA
GGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCACCATGAGCACAAATCCTAA
ACCTCAAAGAAAAACCAAAAGAAACACAAACCGCCGCCCACAGGACGTCAAGTTCCCGGG
CGGTGGCCAGATCGTTGGCGGAGTATACTTGTTGCCGCGCAGGGGCCCCAGGTTGGGTGT
GCGCGCGACGAGGAAGACTTCCGAACGGTCCCAGCCACGCGGAAGACGCCAGCCCATCCC
CAAAGATCGGCGTTCCGCTGGCAAGTCCTGGGGACGTCCAGGATACCCCTGGCCCCTGTA
TGGGAATGAGGGCCTCGGGTGGGCAGGATGGCTCCTGTCCCCCCGAGGCTCTCGCCCTTC
TTGGGGCCCCACAGACCCCCGGCATAGATCACGCAATCTGGGCAAGGTCATCGATACCCT
TACGTGTGGTTTTGCCGATCTCATGGGGTACATACCCGTCGTCGGCGCCCCGGTTGGCGG
CGTTGCCAGAGCACTCGCGCATGGCGTGAGGGTCCTGGAGGACGGGATAAACTATGCAAC
AGGGAATCTACCCGGTTGCTCTTTTTCTATCTTCCTACTAGCTCTCTTGTCTTGCATGTC
TGTACCAGTATCCGCTGTGGAGGTCAAGAACACCAGTCAGATCTACATGGCCACCAATGA
TTGCTCCAACAACAGCATTACGT----GGCAACTTGAAGGTGCGGTACTACATGTTCCTG
GTTGCGTTCCATGCGAGTCGACGGGCAACATATCGCGGTGCTGGATACCAGTCACACCTA
ACGTCGCCGTGAGGGAGCGCGGGGCGCTTACCAAAGGTCTGCGGACGCATATCGATTTGA
TCGTGGTGTCCGCCACGTTCTGCTCCGCTCTTTACATAGGGGATGTTTGTGGTGCGATTA
TGATAGCGGCCCAGGCAACCATCATTTCGCCGCAACACCACACTTTTGTTCAGGACTGCA
ATTGTTCCATTTACCCGGGCCACGTCACAGGACACCGTATGGCATGGGATATGATGATGA
ACTGGTCTCCAGCAACCACCATGATCATGGCATACTTCATGCGCGTCCCTGAAGTCGTTC
TGGACATCATCACTGGAGCGCACTGGGGCGTAATGTTCGGCCTAGCCTACTTCTCCATGC
AGGGGGCGTGGGCCAAGGTCGTCGTCATCCTTCTATTGACTGCAGGAGTGGACGCCCA--
-GACGCACACTATATCTGGTCATGCGGCTAGGACCACGCACGGCCTCGTCAGCTTGTTCA
CCCCTGGGTCCCAACAAAACATCCAACTTGTTAACACCAACGGCAGTTGGCATATTAACC
GCACGGCCTTGAATTGCAATGATTCATTGAAAACAGGGTTCATTGCGGCATTGTTCTACT
CCCATAAATTTAACTCCTCGGGTTGTCCTCAACGAATGTCCTCCTGCCGCTCCATCGAGG
AGTTTAGGATAGGATGGGGCAACCTAGAGTATGAGGAAAATGTTACCAATGATGACAACA
TGAGGCCCTATTGCTGGCATTATCCACCCAGACCATGTGGCATTGTTCCTGCTCAAACCG
TATGTGGCCCAGTGTATTGTTTCACCCCCAGTCCAGTCGTGGTAGGCACCACCGACAGAC
GCGGGGTGCCAACTTACACCTGGGGGGAGAACGACACGGATGTGTTTTTACTGAACAGCA
CGCGGCCTCCGCGGGGAGCTTGGTTTGGATGCACATGGATGAATAGTACTGGGTTTACTA
AGACCTGCGGCGCACCACCTTGCCGCATAAGGCCAGACTTCAATTCCTCCGAGGATCTGC
TGTGCCCCACTGACTGCTTCAGGAAGCACTCTGAGGCTACTTACACCAGATGTGGGGCCG
GACCATGGTTAACTCCCAAATGCCTATTTCATTACCCCTACAGGCTGTGGCATTACCCGT
GTACCATCAACTTCACCATCCACAAAATACGGATGTTCATAGGCGGGGTTGAACACAGGC
TCGAAGCAGCGTGCAATTTTACCCGTGGGGACCGTTGCAATCTGGAAGACCGGGATAGGA
GCCAGCTCAGCCCCTTGCTACATTCCACCACTGAGTGGGCCATTCTACCTTGTACCTTCT
CCGACATGCCGGCTCTATCTACCGGTCTCTTACACCTCCACCAAAACATCGTGGACGTGC
AGTACTTGTATGGCCT---ATCGCCGGCCATTACCAAGTATATTGTCAAATGGGAATGGG
TGGTCCTCTTGTTTCTGCTCCTCGCGGACGCCAGAGTCTGCGCGTGCTTGTGGATGCTTC
TCTTGCTGGGACAAGCTGAGGCAGCGCTGGAGAAGCTAGTCATCCTGCATGCGGCC----
--AGTGCCGCAAGCTCTCATGGCATGCTTTGTTTCATCATCTTCTTCATAGCTGCTTGGT
ACATCAAGGGTCGAGTCACCCCCCTGGTTACTTACTCGTACCTCGGCATGTGGTCCTTCA
GCCTTCTACTCCTGGCACTTCCCCAACAGGCCTATGCCCTTGATACAACTGAGCAGGGGC
AAAT-------AGGCCTGGTCCTTCTAGTGGTCATATCAGTCTTTACACTTAGCCCGGCA
TATAAGATCCTTCTCTGCCGCAGCTTATGGTGGTTGTCCTATTTGTTGGTCCGAGCGGAA
GCTTTGATCCAAGATTGGGTGCCACCTTGGCAGGCCCGAGGCGGCCGCGATGGCATCATA
TGGGCCGCCACCATATTCTGTCCGGGTGTATTGTTTGACATAACCAATTGGCTCCTGGCA
ATCTTAGGACCTGGTTAC----CTCCTTAGGAGTGTCCTCACAAGCACGCCATACTTCGT
CAGAGCGCAAGCGCTGTTGAGGATATGTGCTGCTGTAAGACATCTCTCGGGTGGCAAGTA
CGTCCAGATGATGCTACTAACCCTTGGTAAATGGACTGGCACATACATCTATGATCACCT
CTCCCCAATGTCAGGTTGGGCTGCTAGTGGGCTACGCGACCTCGCGGTTGCTGTAGAACC
CATTGTTTTCAGCCCAATGGAGAAAAAAGTCATTGTGTGGGGAGCGGAGACGGCAGCGTG
TGGTGACATCTTGCACGGGCTGCCGGTCTCCGCCCGCTTGGGTCAGGAGGTGCTGCTGGG
CCCAGCAGACGAGTACACTTCCAAGGGGTGGAAACTTCTTGCGCCCATCACCGCTTATGC
CCAGCAGACGCGTGGTTTGCTGGGTACTATAGTGGTAAGTATGACAGGGCGTGACAAGAC
GGAACAAGCT---GGAGAGATCCAGGTCTTGTCCACGGTCACTCAATCATTCCTCGGGAC
GACAATCTCGGGAATCCTGTGGACGGTCTTCCACGGCGCTGGGAACAAAACGCTAGCTGG
CTCACGAGGGCCTGTTACGCAGATGTATTCCAGCGCCGAGGGGGACCTTGTGGGGTGGCC
CAGCCCTCCTGGTACTAGGTCTTTGGATCCTTGCACGTGTGGCGCTGTTGACCTCTACCT
TGTCACCCGGAACGCTGATGTCATCCCGGCTCGGAGACAGGGAGACCGACGAGGGGCATT
GCTCTCCCCAAGGCCTCTTTCAAGTTTGAAGGGGTCCTCGGGGGGGCCAGTGCTTTGCCC
TAGAGGTCATGCTGTGGGGATTTTCCGAGCAGCCATCTGCACCAGAGGGGCTGCGAAGTC
TATTGACTTCATACCCATCGAGTCGCTCGATGTTATCATCAGATCCCCCAACTTCACTGA
TAACAGTTCACCCCCTGCTGTGCCTCAGACCTACCAGGTGGGATATTTACATGCCCCTAC
CGGTAGTGGGAAGAGCACTAAGGTGCCCGCCTCTTACGCTGCTCAGGGGTACAAGGTATT
GGTGCTAAACCCTTCTGTGGCTGCCACCTTAGGGTTTGGGGCTTACATGTCCAAAGCACA
CGGGATCAATCCCAACATCAGAACTGGGGTTCGAACCGTGACGACCGGAGAGTCCATCAC
ATATTCTACCTATGGCAAATTCCTCGCCGACGGAGGCTGCTCAGGCGGAGCCTATGACGT
CATAATATGCGATGAATGCCATTCAGTTGATGCAACCACCATCCTCGGCATCGGGACAGT
CCTTGACCAGGCTGAGACGGCCGGAGCTAGGTTGACAGTCTTAGCCACGGCCACGCCTCC
TGGGTCTGTAACGACTCCCCACCCCAACATAGAGGAAGTAGCTCTCGGCCACGAGGGTGA
AATCCCTTTTTATGGAAAAGCAATCCCCCTATCTCAGATCAAAGGGGGAAGACATCTGAT
CTTCTGTCACTCCAAGAAGAAGTGCGATGAGCTCGCAGCTGCTCTTCGGGGCATGGGCTT
AAACGCAGTTGCTTACTACAGAGGGCTCGACGTCTCCGTGATACCAACCCAGGGGGACGT
GGTGGTGGTAGCTACCGATGCCCTTATGACGGGGTTCACTGGGGATTTCGACTCAGTGGT
TGACTGCAACGTTGCGGTCACACAGACCGTCGACTTCAGTTTGGACCCCAC---------
------------------------------------------------------------
----------------------------TTTTACTGTGACCACACAAACTGTTCCCCAAG
ACGCTGTGTCACGCAGCCAGCGTAGAGGGCGAACGGGTAGGGGTAGGTTGGGCATATATA
GGTATGTCTCCTCTGGAGAGCGAGCTTCCGGGATGTTCGATTCCGTAGTGCT--------
-----------------------------CTGTGAGTGCTACGATGCTGGAGCAGCCTGG
TATGAGCTCACGCCAGCGGAGACCACTGTCAGGCTCCGGGCATACTTCAACACGCCTGGA
TTACCCGTGTGTCAGGACCATTTAGAGTTCTGGGAGGCAGTTTTTACCGGCCTCACACAC
ATAGATGCTCACTTCCTCTCCCAGACGAAACAAGCGGGGGAGAACTTCCCGTACCTGGTG
GCATATCAGGCTACGGTGTGTGCTAGAGCTAAAGCCCCCCCCCCGTCTTGGGATGTCATG
TGGAAATGCCTGATTCGACTCAAGCCTACGCTCACCGGCCCAACACCTCTGCTCTATCGC
TTAGGCCCTGTCACCAATGAGACCACTCTCACACACCCCGTAACCAAATACATCGCCACG
TGCATGCAAGCTGACCTTGAGATCATGACGAGCACATGGGTGCTTGCTGGGGGAGTGTTA
GCAGCCATCGCCGCCTATTGCTTGGCGACTGGCTGTGTGGTCTGCATCGGTCGTGTGAAC
ATCAATCAAAAGACC-ATAGTCGCCCCTGATAAGGAAGTCCTGTACGAGGCGTTTGATGA
GATGGAGGAATGCGCTTCCAGGGCTCTCCTACTTGAGGAGGGGCAACGAATAGCGGAAAT
GCTGAAGTCCAAAATCCAAGGCTTGCTACAACAAGCCACGAAGCAGGCCCAAGACATTCA
GCCCGCTGTTCAGGCTACTTGGCCCAAACTGGAACAATTCTGGGCCAAGCACATGTGGAA
TTTCATTAGTGGTATCCAGTATTTGGCAGGACTTTCCACGCTACCTGGGAATCCTGCCGT
GGCTGCAATGATGGCGTTCAGCGCCGCACTCACTAGCCCGCT-GCCCACCAGTACTACCA
TCCTCCTAAACATCATGGGGGGTTGGCTAGCTTCCCAGATCGCTCCCGCCGCGGGGGCCA
CCGGCTTTGTCGTTAGCGGCTTAGTAGGGGCTGCCGTGGGCAGTATAGGTCTGGGTAAAA
TATTGGTGGACGTCTTGGCAGGCTATGGTGCTGGCATCTCGGGGGCCCTCGTCGCTTTTA
AGATCATGTCCGGCGAGAAGCCTTCCGTGGAAGATGTCGTTAATCTGCTCCCCGGGATTC
TATCACCGGGTGCGTTAGTAGTCGGCGTCATCTGCGCGGCCATCTTACGCCGCCACGTGG
GACAAGGGGAAGGCGCGGTCCAGTGGATGAATAGGCTCATAGCCTTTGCTTCCAGAGGTA
ACCACGTCGCCCCGACTCACTACGTGGCGGAGTCTGATGCGTCGCAGCGGGTAACGCAGC
TACTTGGCTCGCTCACCATCACTAGCCTACTCAGAAGGCTCCATACCTGGATTACCGAAG
ACTGCCCTGTTCCATGCGCCGGCTCTTGGCTTCGCGACATATGGGACTGGGCCTGTACTA
TCTTGACTGACTTTAAAAATTGGCTCTCCACCAAACTGCTTCCAAAAATGCCCGGCCTCC
CCTTCATCTCCTGTCAAAGGGGGCATAAAGGGGCTTGGACTGGCACTGGCATCATGACAA
CACGGTGCCCATGCGGAGCTGTCGTTTCGGGCAATGTCCGTCACGGTTCCATGAGGATAA
CCGGACCTAAAACTTGCATGAATACCTGGCAGGGGACCTTTCCCATCAACTGCTATACAG
AAGGTCAGTGTGCACCACAACCCACACATAAC--TACAAAACCGCTATATGGAAGGTGGC
AGCAGCGGAATATGCGGAGGTGACACGACATGGTTCCTATGCTTATGTTACAGGTTTGAC
AAATGACAATCTCAAAGTCCCTTGCCAGTTGCCTGCACCGGAGTTCTTCTCCTGGGTGGA
TGGGGTGCAAATCCACAGGTTCGCTCCCACACCAAAGCCGTTCATTAGGGATGAGGTCTC
GTTCACCGTGGGCCTCAACTCTTTTGTGGTGGGGTCTCAGCTGCCTTGTGAACCTGAGCC
GGACACGGAAGTGTTGGCATCAATGCTGACGGACCCATCCCACATTACGGCAGAGGCAGC
GGCTAGGCGCTTAGCGCGAGGCTCG------CCTCCATCCGAGGCCAGCTCTTCTGCGAG
TCAACTCTCAGCGCCGTCGTTGCGAGCTACCTGTACCGCCCATGCTAAGAACTATGCGGT
TGAGATGGTGGATGCAAACTTCTT------------CATGGGGAGTGATGTGACACGGAT
AGAATCCGAGACGAAGGTGCTTATCCTAGACTCTCTCGACCCTTCGGTTGAAGAGGAGGA
CGAGCGCGAACCTTCAGTGCCATCAGAGTATCTCCTCCCCAAGAAAAAGTTCCCACAGGC
TCTACCAGTCT--------------------------------------GGGCGAGGCCA
GACTACAATCCACCAGTCGTAGAGACCTGGAAGAGACCAGATTATGACCCACCAACAGTA
TCCGGGTGTGCTCTTCCCCCCCGTGTTACAGCCCCAACGCCCCCACCCAGGAGGCGACGG
GCGTTAGTCCTGAGTCAGAGCAATGTAGGGGAAGCTCTTCAAGCATTGGCCATTAAGAGC
TTTGGCCAACTTCCCCCTAG----CTGTGATTCAGGTCGCTCCACAGGGATGGACACTAC
CGATGCTACTGACCAACCAGCCTTAAAGGAATCTACTGACTCGGAAGCAGGCTCTGATTC
CTCCATGCCTCCCCTCGAGGGGGAGCCGGGGGACCCTGACCTAGAGTCTGGGTCGGTGGA
GTACCATCCCTCCTCCCAGGAGGGGGAGGCAGCTC-CTGATCTAGACTCCGGCTCCTGGT
CCACATGTTCCGAGGAGG---GGGGTTCTGAAGTTTGTTGCTCCATGTCCTACTCCTGGA
CCGGGGCGCTGATAACTCCATGCGGCCCGGAAGAGGAAAAGTTACCGATCAACCCGTTGA
GCAACTCATTGCTGCGGTATCACAACAAGGTGTATAGTACAACATCACGCAGTGCTTCAC
AACGGGCTAAAAAGGTGACCTTTGACAGGGTGCAACTACTTGACTCTCATTATGACCAAG
TCTTAAAGGACATTAAGCTGGCTGCTTCCAAAGTCAGTGCTAACCTACTCTCTATAGAGG
AGGCATGTGCGCTGACCCCCCCCCATTCCGCAAGATCGAAGTATGGGTTCGGGGCAAAGG
AGGTTCGCAGCTTGTCCAGGAAGGCCGTCGACCACATCAAGTCCGTGTGGAAGGACCTCC
TGGAAGACCAACAAACACCAATTCCTACAACCATCATGGCCAAAAATGAGGTGTTCTGCA
TCGACCCGACGAAAGGCGGGAAGAAGGCTGCTCGCCTCATCGTATTCCCTGATCTTGGCG
TCAGGGTTTGCGAGAAAATGGCCCTTTATGACATCACACAGAAGCTACCCCAGGCAGTAA
TGGGAGCTTCATATGGATTCCAGTACTCTCCCGCACAGCGTGTTGATTTCCTGCTGCGAG
CTTGGAAAGAAAAGAAAGACCCTATGGGTTTTTCGTATGATACCCGCTGTTTCGACTCAA
CAGTCACGGAGAGAGATATCAGGACTGAGGAGTCCATATACCTGGCCTGCTCATTGCCCG
AGGAAGCTCGGGTTGCCATACACTCACTAACTGAGAGACTTTACGTGGGCGGGCCCATGA
TGAACAGCAAGGGCCAGTCTTGCGGTTATAGGCGTTGTCGCGCAAGCGGAGTGCTCACCA
CTAGCATGGGGAACACTATCACGTGCTACGTGAAGGCCTTGGCGGCCTGCAAGGCCGCAG
GGATTGTGGCTCCCACCATGTTGGTGTGCGGCGACGACCTAGTAGTCATCTCAGAGAGTC
AGGGAGCTGAGGAGGATGAGCGAAATCTGAGAGTCTTCACGGAGGCTATGACCAGATATT
CTGCTCCCCCCGGCGACCCCCCTAAACCAGAATATGACTTGGAGCTGATAACATCATGCT
CTTCAAATGTATCTGTGGCTTTAGACCAGCATGGTCGGCGCATGTACTACCTGACCAGAG
ACCCTAGCACTCCACTCGCCAGGGCTGCCTGGGAGACAGCTAGACACTCCCCTGTCAATT
CATGGCTGGGAAACATCATTCAATACGCCCCCACCATATGGGTGCGCATGGTCCTCATGA
CACACTTTTTCTCCGTCCTAATGGCCCAGGAAACCCTGGATCAAGACCTAAACTTTGAAA
TGTACGGAGCAGTGTATTCTGTGAACCCTCTGGACCTCCCAGCCATAATTGAGAGACTAC
ATGGGCTTGAAGCTTTCTCACTGCACGGTTACTCTCCCACCGAACTCACTCGGGTGGCAG
CAGCTCTCAGAAAACTTGGAGCGCCTCCCCTCAGAGCGTGGAAGAGCCGGGCACGTGCGG
TGAGGGCATCA--------CTCATCTCCCAGGGAGGGAGAGCGGCCACTTGTGGCTTCTA
TCTCTTCAACTGGGCGGTGAGGACAAAGCGCAAACTCACTCCATTGCCGGCAAGCGCGCC
GCCTGGATCTATCCGGGTGGTTCACTGTCGGCGCTGGCGGGGGCGACATTT-ATCACAGC
GTG-TCGCGAGCCCGACCCCGCTTCTTACTCCT-TTGCCTACTCCTACTCAGCGTAGGGG
TAGGCATCTTTTTACTCCCCGCTCGGTAGAGCGGCACACCTTAGCT--ACACTCCATAGC
TA---ACTGTTTTT------------------------TTTTT-----------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------
> 4:1-9680 + hcv-half1.fasta
-ACCTG-CCCCTAATAGGGGCGACACTCCGCCATGAATCACTCCCCTGTGAGGAACTACT
GTCTTCACGCAGAAAGCGCCTAGCCATGGCGTTAGTATGAGTGTCGTACAGCCTCCAGGC
CCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCG
GGAAGACTGGGTCCTTTCTTGGATAAA-CCCACTCTATGCCCGGCCATTTGGGCGTGCCC
CCGCAAGACTGCTAGCCGAGTAGCGTTGGGTTGCGAAAGGCCTTGTGGTACTGCCTGATA
GGGCGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCACCATGAGCACAAATCCTAA
ACCTCAAAGAAAAACCAAAAGAAACACCAACCGTCGCCCAGAAGACGTTAAGTTCCCGGG
CGGCGGCCAGATCGTTGGCGGAGTATACTTGTTGCCGCGCAGGGGCCCCAGGTTGGGTGT
GCGCACGACAAGGAAAACTTCGGAGCGGTCCCAGCCACGTGGGAGACGCCAGCCCATCCC
CAAAGATCGGCGCTCCACTGGCAAGGCCTGGGGAAAACCAGGTCGCCCCTGGCCCCTATA
TGGGAATGAGGGACTCGGCTGGGCAGGATGGCTCCTGTCCCCCCGAGGCTCTCGCCCCTC
CTGGGGCCCCACTGACCCCCGGCATAGGTCGCGCAACGTGGGTAAAGTCATCGACACCCT
AACGTGTGGCTTTGCCGACCTCATGGGGTACATCCCCGTCGTAGGCGCCCCGCTTAGTGG
CGCCGCCAGAGCTGTCGCGCACGGCGTGAGAGTCCTGGAGGACGGGGTTAATTATGCAAC
AGGGAACCTACCCGGTTTCCCCTTTTCTATCTTCTTGCTGGCCCTGTTGTCCTGCATCAC
CGTTCCGGTCTCTGCTGCCCAGGTGAAGAATACCAGTAGCAGCTACATGGTGACCAATGA
CTGCTCCAATGACAGCATCACTT----GGCAGCTCGAGGCTGCGGTTCTCCACGTCCCCG
GGTGCGTCCCGTGCGAGAGAGTGGGGAATACGTCACGGTGTTGGGTGCCAGTCTCGCCAA
ACATGGCTGTGCGGCAGCCCGGTGCCCTCACGCAGGGTCTGCGGACGCACATCGATATGG
TTGTGATGTCCGCCACCTTCTGCTCTGCTCTCTACGTGGGGGACCTCTGTGGCGGGGTGA
TGCTCGCGGCCCAGGTGTTCATCGTCTCGCCGCAGTACCACTGGTTTGTGCAAGAATGCA
ATTGCTCCATCTACCCTGGCACCATCACTGGACACCGCATGGCATGGGACATGATGATGA
ACTGGTCGCCCACGGCCACCATGATCCTGGCGTACGTGATGCGCGTCCCCGAGGTCATCA
TAGACATCGTTAGCGGGGCTCACTGGGGCGTCATGTTCGGCTTGGCCTACTTCTCTATGC
AGGGAGCGTGGGCGAAGGTCATTGTCATCCTTCTGCTGGCCGCTGGGGTGGACGCGGG--
-CACCACCACCGTTGGAGGCGCTGTTGCACGTTCCACCAACGTGATTGCCGGCGTGTTCA
GCCATGGCCCTCAGCAGAACATTCAGCTCATTAACACCAACGGCAGTTGGCACATCAACC
GTACTGCCTTGAATTGCAATGACTCCTTGAACACCGGCTTTCTCGCGGCCTTGTTCTACA
CCAACCGCTTTAACTCGTCAGGGTGTCCAGGGCGCCTGTCCGCCTGCCGCAACATCGAGG
CTTTCCGGATAGGGTGGGGCACCCTACAGTACGAGGATAATGTCACCAATCCAGAGGATA
TGAGGCCGTACTGCTGGCACTACCCCCCAAAGCCGTGTGGCGTAGTCCCCGCGAGGTCTG
TGTGTGGCCCAGTGTACTGTTTCACCCCCAGCCCGGTAGTAGTGGGCACGACCGACAGAC
GTGGAGTGCCCACCTACACATGGGGAGAGAATGAGACAGATGTCTTCCTACTGAACAGCA
CCCGACCGCCGCAGGGCTCATGGTTCGGCTGCACGTGGATGAACTCCACTGGTTTCACCA
AGACTTGTGGCGCGCCACCTTGCCGCACCAGAGCTGACTTCAACGCCAGCACGGACTTGT
TGTGCCCTACGGATTGTTTTAGGAAGCATCCTGATGCCACTTATATTAAGTGTGGTTCTG
GGCCCTGGCTCACACCAAAGTGCCTGGTCCACTACCCTTACAGACTCTGGCATTACCCCT
GCACAGTCAATTTTACCATCTTCAAGATAAGAATGTATGTAGGGGGGGTTGAGCACAGGC
TCACGGCCGCATGCAACTTCACTCGTGGGGATCGCTGCGACTTGGAGGACAGGGACAGGA
GTCAGCTGTCTCCTCTGTTGCACTCTACCACGGAATGGGCCATCCTGCCCTGCACCTACT
CAGACTTACCCGCTTTGTCAACTGGTCTTCTCCACCTTCACCAGAACATCGTGGACGTAC
AATACATGTATGGCCT---CTCACCTGCTATCACAAAATACGTCGTTCGATGGGAGTGGG
TGGTACTCTTATTCCTGCTCTTAGCGGACGCCAGAGTCTGCGCCTGCTTGTGGATGCTCA
TCTTGTTGGGCCAGGCCGAAGCAGCATTGGAGAAGTTGGTCGTCTTGCACGCTGCG----
--AGTGCGGCTAACTGCCATGGCCTCCTATATTTTGCCATCTTCTTCGTGGCAGCTTGGC
ACATCAGGGGTCGGGTGGTCCCCTTGACCACCTATTGCCTCACTGGCCTATGGCCCTTCT
GCCTACTGCTCATGGCACTGCCCCGGCAGGCTTATGCCTATGACGCACCTGTGCACGGAC
AGAT-------AGGCGTGGGTTTGTTGATATTGATCACCCTCTTCACACTCACCCCGGGG
TATAAGACCCTCCTCGGCCAGTGTCTGTGGTGGTTGTGCTATCTCCTGACCCTGGGGGAA
GCCATGATTCAGGAGTGGGTACCACCCATGCAGGTGCGCGGCGGCCGCGATGGCATCGCG
TGGGCCGTCACTATATTCTGCCCGGGTGTGGTGTTTGACATTACCAAATGGCTTTTGGCG
TTGCTTGGGCCTGCTTAC----CTCTTAAGGGCCGCTTTGACACATGTGCCGTACTTCGT
CAGAGCTCACGCTCTGATAAGGGTATGCGCTTTGGTGAAGCAGCTCGCGGGGGGTAGGTA
TGTTCAGGTGGCGCTATTGGCCCTTGGCAGGTGGACTGGCACCTACATCTATGACCACCT
CACACCTATGTCGGACTGGGCCGCTAGCGGCCTGCGCGACTTAGCGGTCGCCGTGGAACC
CATCATCTTCAGTCCGATGGAGAAGAAGGTCATCGTCTGGGGAGCGGAGACGGCTGCATG
TGGGGACATTCTACATGGACTTCCCGTGTCCGCCCGACTCGGCCAGGAGATCCTCCTCGG
CCCAGCTGATGGCTACACCTCCAAGGGGTGGAAGCTCCTTGCTCCCATCACTGCTTATGC
CCAGCAAACACGAGGCCTCCTGGGCGCCATAGTGGTGAGTATGACGGGGCGTGACAGGAC
AGAACAGGCC---GGGGAAGTCCAAATCCTGTCCACAGTCTCTCAGTCCTTCCTCGGAAC
AACCATCTCGGGGGTTTTGTGGACTGTTTACCACGGAGCTGGCAACAAGACTCTAGCCGG
CTTACGGGGTCCGGTCACGCAGATGTACTCGAGTGCTGAGGGGGACTTGGTAGGCTGGCC
CAGCCCCCCTGGGACCAAGTCTTTGGAGCCGTGCAAGTGTGGAGCCGTCGACCTATATCT
GGTCACGCGGAACGCTGATGTCATCCCGGCTCGGAGACGCGGGGACAAGCGGGGAGCATT
GCTCTCCCCGAGACCCATTTCGACCTTGAAGGGGTCCTCGGGGGGGCCGGTGCTCTGCCC
TAGGGGCCACGTCGTTGGGCTCTTCCGAGCAGCTGTGTGCTCTCGGGGCGTGGCCAAATC
CATCGATTTCATCCCCGTTGAGACACTCGACGTTGTTACAAGGTCTCCCACTTTCAGTGA
CAACAGCACGCCACCGGCTGTGCCCCAGACCTATCAGGTCGGGTACTTGCATGCTCCAAC
TGGCAGTGGAAAGAGCACCAAGGTCCCTGTCGCGTATGCCGCCCAGGGGTACAAAGTACT
AGTGCTTAACCCCTCGGTAGCTGCCACCCTGGGGTTTGGGGCGTACCTATCCAAGGCACA
TGGCATCAATCCCAACATTAGGACTGGAGTCAGGACCGTGATGACCGGGGAGGCCATCAC
GTACTCCACATATGGCAAATTTCTCGCCGATGGGGGCTGCGCTAGCGGCGCCTATGACAT
CATCATATGCGATGAATGCCACGCTGTGGATGCTACCTCCATTCTCGGCATCGGAACGGT
CCTTGATCAAGCAGAGACAGCCGGGGTCAGACTAACTGTGCTGGCTACGGCCACACCCCC
CGGGTCAGTGACAACCCCCCATCCCGATATAGAAGAGGTAGGCCTCGGGCGGGAGGGTGA
GATCCCCTTCTATGGGAGGGCGATTCCCCTATCCTGCATCAAGGGAGGGAGACACCTGAT
TTTCTGCCACTCAAAGAAAAAGTGTGACGAGCTCGCGGCGGCCCTTCGGGGCATGGGCTT
GAATGCCGTGGCATACTATAGAGGGTTGGACGTCTCCATAATACCAGCTCAGGGAGATGT
GGTGGTCGTCGCCACCGACGCCCTCATGACGGGGTACACTGGAGACTTTGACTCCGTGAT
CGACTGCAATGTAGCGGTCACCCAAGCTGTCGACTTCAGCCTGGACCCCAC---------
------------------------------------------------------------
----------------------------CTTCACTATAACCACACAGACTGTCCCACAAG
ACGCTGTCTCACGCAGTCAGCGCCGCGGGCGCACAGGTAGAGGAAGACAGGGCACTTATA
GGTATGTTTCCACTGGTGAACGAGCCTCAGGAATGTTTGACAGTGTAGTGCT--------
-----------------------------TTGTGAGTGCTACGACGCAGGGGCTGCGTGG
TACGATCTCACACCAGCGGAGACCACCGTCAGGCTTAGAGCGTATTTCAACACGCCCGGC
CTACCCGTGTGTCAAGACCATCTTGAATTTTGGGAGGCAGTTTTCACCGGCCTCACACAC
ATAGACGCCCACTTCCTCTCCCAAACAAAGCAAGCGGGGGAGAACTTCGCGTACCTAGTA
GCCTACCAAGCTACGGTGTGCGCCAGAGCCAAGGCCCCTCCCCCGTCCTGGGACGCCATG
TGGAAGTGCCTGGCCCGACTCAAGCCTACGCTTGCGGGCCCCACACCTCTCCTGTACCGT
TTGGGCCCTATTACCAATGAGGTCACCCTCACACACCCTGGGACGAAGTACATCGCCACA
TGCATGCAAGCTGACCTTGAGGTCATGACCAGCACGTGGGTCCTAGCTGGAGGAGTCCTG
GCAGCCGTCGCCGCATATTGCCTGGCGACTGGATGCGTTTCCATCATCGGCCGCTTGCAC
GTCAACCAGCGAGTC-GTCGTTGCGCCGGATAAGGAGGTCCTGTATGAGGCTTTTGATGA
GATGGAGGAATGCGCCTCTAGGGCGGCTCTCATCGAAGAGGGGCAGCGGATAGCCGAGAT
GTTGAAGTCCAAGATCCAAGGCTTGCTGCAGCAGGCCTCTAAGCAGGCCCAGGACATACA
ACCCGCTATGCAGGCTTCATGGCCCAAAGTGGAACAATTTTGGGCCAGACACATGTGGAA
CTTCATTAGCGGCATCCAATACCTCGCAGGATTGTCAACACTGCCAGGGAACCCCGCGGT
GGCTTCCATGATGGCATTCAGTGCCGCCCTCACCAGTCCGTT-GTCGACCAGTACCACCA
TCCTTCTCAACATCATGGGAGGCTGGTTAGCGTCCCAGATCGCACCACCCGCGGGGGCCA
CCGGCTTTGTCGTCAGTGGCCTGGTGGGGGCTGCCGTGGGCAGCATAGGCCTGGGTAAGG
TGCTGGTGGACATCCTGGCAGGATATGGTGCGGGCATTTCGGGGGCCCTCGTCGCATTCA
AGATCATGTCTGGCGAGAAGCCCTCTATGGAAGATGTCATCAATCTACTGCCTGGGATCC
TGTCTCCGGGAGCCCTGGTGGTGGGGGTCATCTGCGCGGCCATTCTGCGCCGCCACGTGG
GACCGGGGGAGGGCGCGGTCCAATGGATGAACAGGCTTATTGCCTTTGCTTCCAGAGGAA
ACCACGTCGCCCCTACTCACTACGTGACGGAGTCGGATGCGTCGCAGCGTGTGACCCAAC
TACTTGGCTCTCTTACTATAACCAGCCTACTCAGAAGACTCCACAATTGGATAACTGAGG
ACTGCCCCATCCCATGCTCCGGATCCTGGCTCCGCGACGTGTGGGACTGGGTTTGCACCA
TCTTGACAGACTTCAAAAATTGGCTGACCTCTAAATTGTTCCCCAAGCTGCCCGGCCTCC
CCTTCATCTCTTGTCAAAAGGGGTACAAGGGTGTGTGGGCCGGCACTGGCATCATGACCA
CGCGCTGCCCTTGCGGCGCCAACATCTCTGGCAATGTCCGCCTGGGCTCTATGAGGATCA
CAGGGCCTAAAACCTGCATGAACACCTGGCAGGGGACCTTTCCTATCAATTGCTACACGG
AGGGCCAGTGCGCGCCGAAACCCCCCACGAAC--TACAAGACCGCCATCTGGAGGGTGGC
GGCCTCGGAGTACGCGGAGGTGACGCAGCATGGGTCGTACTCCTATGTAACAGGACTGAC
CACTGACAATCTGAAAATTCCTTGCCAACTACCTTCTCCAGAGTTTTTCTCCTGGGTGGA
CGGTGTGCAGATCCATAGGTTTGCACCCACACCAAAGCCGTTTTTCCGGGATGAGGTCTC
GTTCTGCGTTGGGCTTAATTCCTATGCTGTCGGGTCCCAGCTTCCCTGTGAACCTGAGCC
CGACGCAGACGTATTGAGGTCCATGCTAACAGATCCGCCCCACATCACGGCGGAGACTGC
GGCGCGGCGCTTGGCACGGGGATCA------CCTCCATCTGAGGCGAGCTCCTCAGTGAG
CCAGCTATCAGCACCGTCGCTGCGGGCCACCTGCACCACCCACAGCAACACCTATGACGT
GGACATGGTCGATGCCAACCTGCT------------CATGGAGGGCGGTGTGGCTCAGAC
AGAGCCTGAGTCCAGGGTGCCCGTTCTGGACTTTCTCGAGCCAATGGCCGAGGAAGAGAG
CGACCTTGAGCCCTCAATACCATCGGAGTGCATGCTCCCCAGGAGCGGGTTTCCACGGGC
CTTACCGGCTT--------------------------------------GGGCACGGCCT
GACTACAACCCGCCGCTCGTGGAATCGTGGAGGAGGCCAGATTACCAACCGCCCACCGTT
GCTGGTTGTGCTCTCCCCCCCCCCAAGAAGGCCCCGACGCCTCCCCCAAGGAGACGCCGG
ACAGTGGGTCTGAGCGAGAGCACCATATCAGAAGCCCTCCAGCAACTGGCCATCAAGACC
TTTGGCCAGCCCCCCTCGAG----CGGTGATGCAGGCTCGTCCACGGGGGCGGGCGCCGC
CGAATCCGGCGGTCCGACGTCCCCTGGTGAGCCGGCCCCCTCAGAGACAGGTTCCGCCTC
CTCTATGCCCCCCCTCGAGGGGGAGCCTGGAGATCCGGACCTGGAGTCTGATCAGGTAGA
GCTTCAACCTCCCCCCCAGGGGGGGGGGGTAGCTC-CCGGTTCGGGCTCGGGGTCTTGGT
CTACTTGCTCCGAGGAGG---ACGATACCACCGTGTGCTGCTCCATGTCATACTCCTGGA
CCGGGGCTCTAATAACTCCCTGTAGCCCCGAAGAGGAAAAGTTGCCAATCAACCCTTTGA
GTAACTCGCTGTTGCGATACCATAACAAGGTGTACTGTACAACATCAAAGAGCGCCTCAC
AGAGGGCTAAAAAGGTAACTTTTGACAGGACGCAAGTGCTCGACGCCCATTATGACTCAG
TCTTAAAGGACATCAAGCTAGCGGCTTCCAAGGTCAGCGCAAGGCTCCTCACCTTGGAGG
AGGCGTGCCAGTTGACTCCACCCCATTCTGCAAGATCCAAGTATGGATTCGGGGCCAAGG
AGGTCCGCAGCTTGTCCGGGAGGGCCGTTAACCACATCAAGTCCGTGTGGAAGGACCTCC
TGGAAGACCCACAAACACCAATTCCCACAACCATCATGGCCAAAAATGAGGTGTTCTGCG
TGGACCCCGCCAAGGGGGGTAAGAAACCAGCTCGCCTCATCGTTTACCCTGACCTCGGCG
TCCGGGTCTGCGAGAAAATGGCCCTCTATGACATTACACAAAAGCTTCCTCAGGCGGTAA
TGGGAGCTTCCTATGGCTTCCAGTACTCCCCTGCCCAACGGGTGGAGTATCTCTTGAAAG
CATGGGCGGAAAAGAAGGACCCCATGGGTTTTTCGTATGATACCCGATGCTTCGACTCAA
CCGTCACTGAGAGAGACATCAGGACCGAGGAGTCCATATACCAGGCCTGCTCCCTGCCCG
AGGAGGCCCGCACTGCCATACACTCGCTGACTGAGAGACTTTACGTAGGAGGGCCCATGT
TCAACAGCAAGGGTCAAACCTGCGGTTACAGACGTTGCCGCGCCAGCGGGGTGCTAACCA
CTAGCATGGGTAACACCATCACATGCTATGTGAAAGCCCTAGCGGCCTGCAAGGCTGCGG
GGATAGTTGCGCCCACAATGCTGGTATGCGGCGATGACCTAGTAGTCATCTCAGAAAGCC
AGGGGACTGAGGAGGACGAGCGGAACCTGAGAGCCTTCACGGAGGCCATGACCAGGTACT
CTGCCCCTCCTGGTGATCCCCCCAGACCGGAATATGACCTGGAGCTAATAACATCCTGTT
CCTCAAATGTGTCTGTGGCGTTGGGCCCGCGGGGCCGCCGCAGATACTACCTGACCAGAG
ACCCAACCACTCCACTCGCCCGGGCTGCCTGGGAAACAGTTAGACACTCCCCTATCAATT
CATGGCTGGGAAACATCATCCAGTATGCTCCAACCATATGGGTTCGCATGGTCCTAATGA
CACACTTCTTCTCCATTCTCATGGTCCAAGACACCCTGGACCAGAACCTCAACTTTGAGA
TGTATGGATCAGTATACTCCGTGAATCCTTTGGACCTTCCAGCCATAATTGAGAGGTTAC
ACGGGCTTGACGCCTTTTCTATGCACACATACTCTCACCACGAACTGACGCGGGTGGCTT
CAGCCCTCAGAAAACTTGGGGCGCCACCCCTCAGGGTGTGGAAGAGTCGGGCTCGCGCAG
TCAGGGCGTCC--------CTCATCTCCCGTGGAGGGAAAGCGGCCGTTTGCGGCCGATA
TCTCTTCAATTGGGCGGTGAAGACCAAGCTCAAACTCACTCCATTGCCGGAGGACGCGCC
TACTGGACTTATCCAGTTGGTTCACCGTCGGCGCCGGCGGGGGCGACATTT-TTCACAGC
GTG-TCGCGCGCCCGACCCCGCTCATTACTCTT-CGGCCTACTCCTACTTTTCGTAGGGG
TAGGCCTCTTCCTACTCCCCGCTCGGTAGAGCGGCACACACTAGGT--ACACTCCATAGC
TA---ACTGTTCCT------------------------TTTTTTTTTTTTTTTTTTATTT
TTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTCCCT-------------CTTTCTT
CCCTTCTCATCTTATTCTACTTTCTTTCTTGGTGGCTCCATCTTAGCCCTAGTCACG-GC
TAGCTGTGAAAGGTCCGTGAGC-CGCATGACT-GCAGAGAGTGCCGTAACTGGTCTCTCT
GCAGATCATGT--
> 5:1-9676 + hcv-half1.fasta
-ACCCG-CCCCTAATAGGGGCGACACTCCGCCATGAATCACTCCCCTGTGAGGAACTACT
GTCTTCACGCAGAAAGCGTCTAGCCATGGCGTTAGTATGAGTGTCGTACAGCCTCCAGGC
CCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCG
GGAAGACTGGGTCCTTTCTTGGATAAA-CCCACTCTATGCCCGGCCATTTGGGCGTGCCC
CCGCAAGACTGCTAGCCGAGTAGCGTTGGGTTGCGAAAGGCCTTGTGGTACTGCCTGATA
GGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCACCATGAGCACAAATCCCAA
ACCTCAAAGAAAAACCAAAAGAAACACTAACCGTCGCCCACAAGACGTTAAGTTTCCGGG
CGGCGGCCAGATCGTTGGCGGAGTATACTTGTTGCCGCGCAGGGGCCCCAGGTTGGGTGT
GCGCGCGACAAGGAAGGCTTCGGAGCGGTCCCAGCCACGTGGGAGGCGCCAGCCCATCCC
CAAACATCGGCGCTCCACTGGCAAGTCCTGGGGGAAGCCAGGATACCCCTGGCCCCTGTA
TGGGAATGAGGGGCTCGGTTGGGCAGGATGGCTCCTGTCCCCTCGAGGTTCCCGTCCCTC
ATGGGGCCCCAATGACCCCCGGCATAGGTCGCGCAATGTGGGTAAGGTCATCGATACCCT
AACGTGCGGCTTTGCCGACCTCTTGGGGTACGTCCCCGTCGTAGGCGCCCCGCTTAGTGG
CGTTGCCAGTGCTCTCGCGCACGGCGTGAGAGTCCTGGAGGACGGGGTTAATTTTGCAAC
AGGGAACTTACCTGGTTGCTCCTTTTCTATCTTCTTGCTGGCCCTACTGTCCTGCATCAC
TACTCCGGTCTCTGCTGTCCAAGTGAAGAACACCAGCAACGCCTATATGGCGACTAACGA
CTGTTCCAATGACAGCATCACTT----GGCAGCTTGAGGCCGCAGTCCTCCATGTCCCCG
GGTGCGTCCCGTGCGAGAAAATGGGGAACACATCACGGTGCTGGATACCAGTCTCACCAA
ACGTGGCTGTGCGGCAGCCTGGCGCCCTCACGCGGGGCTTGCGGACGCACATCGACATGG
TCGTGTTGTCCGCCACGCTCTGCTCCGCTCTCTACGTGGGGGACCTCTGTGGCGGGGTGA
TGCTCGCGTCCCAGATGTTCATTGTCTCGCCGCAGCACCACTGGTTCGTGCAGGAATGCA
ATTGCTCCATCTACCCTGGCGCCATCACTGGGCACCGTATGGCATGGGACATGATGATGA
ACTGGTCGCCCACGACCACCATGATCCTGGCGTACGTGATGCGCGTTCCCGAGGTCATCA
TAGACATCATTAGCGGAGCTCACTGGGGCGTCATGTTTGGCCTGGCCTACTTCTCTATGC
AGGGAGCGTGGGCGAAGGTCGTTGTCATCCTCCTGCTGGCCTCTGGGGTGGACGCGTA--
-CACCACCACGACTGGGAGCGCTGCTGGGCGCACTACCAGTAGCCTGGCCAGCGCCTTCT
CCCCTGGCGCTCGGCAGAACATTCAGCTCATTAATACCAATGGTAGCTGGCACATCAACC
GCACCGCCCTGAATTGCAACGATTCCTTGCACACCGGCTTCTTCACGGCCCTGTTCTACA
TCCATAAGTTCAACTCGTCGGGATGTCCCGAGCGCCTGTCCGCCTGTCGCAACATCGAGG
ACTTCCGGATAGGATGGGGCGCCCTGCAATACGACGACAATGTCACCAATCCAGAAGATA
TGAGGCCATATTGCTGGCACTACCCACCAAAACAGTGTGGCGTAGTCCCCGCAGGGACCG
TGTGCGGCCCAGTGTACTGTTTCACCCCTAGCCCGGTGGTAGTGGGCACGACCGATAGAC
TTGGAGTGCCTACTTACACGTGGGGAGAGAATGAGACAGATGTCTTCCTATTGAACAGCA
CCCGACCACCGTCGGGGTCATGGTTTGGCTGCACGTGGATGAACTCCACTGGCTTCACCA
AGACCTGCGGCGCACCACCCTGCCGCACTAGAGCTGACTTCAATACCAGCACAGATCTGT
TGTGCCCCACGGACTGTTTTAGAAAACATCCTGAAGCCACTTACATCAAATGTGGTTCCG
GGCCTTGGCTCACGCCAAAGTGTCTGGTTGACTACCCCTACAGGCTCTGGCATTACCCTT
GCACAGTCAATTACTCCACCTTCAAGATCAGGATGTATGTGGGGGGAGTTGAGCACAGGC
TCATGGCCGCGTGCAATTTCACTCGTGGGGATCGCTGCAACTTGGAGGATAGGGACAGAA
GTCAACAGACTCCTCTGTTGCACTCCACCACGGAATGGGCCATTTTGCCCTGCTCTTTCT
CAGACTTGCCCGCTTTGTCGACTGGTCTTCTCCACCTCCACCAAAATATCGTGGACGTAC
AATATATGTATGGCCT---GTCACCTGCCCTCACACAATATATCGTTCGATGGGAGTGGG
TAGTACTCTTATTCCTGCTCCTAGCGGACGCCAGGGTCTGCGCCTGCTTGTGGATGCTCA
TCTTGCTGGGCCAAGCCGAAGCAGCACTGGAGAAGCTGGTCGTCTTGCACGCTGCG----
--AGCGCAGCTAGCTGCAATGGCTTCCTGTATTTTGTCATCTTTCTCGTGGCTGCTTGGC
ACATCAAGGGTAGGGTGGTCCCCTTGGCTGCTTATTCCCTTACTGGCCTGTGGCCGTTCT
GCCTACTGCTCCTAGCACTGCCCCAGCAGGCTTACGCCTATGATGCATCTGTGCACGGAC
AGGT-------GGGCGCGGCTTTGCTAGTACTGATTACCCTCTTTACACTCACCCCGGGG
TATAAGACCCTTCTCAGCCAGTCCCTGTGGTGGTTGTGCTATCTCCTGACCCTGGCGGAA
ACCATGGTCCAGGAGTGGGCACCATCCATGCAGGCGCGCGGCGGCCGTGATGGCATCATA
TGGGCCGCCACCATATTTTGCCCGGGCGTAGTGTTTGACATAACCAAGTGGCTCTTAGCG
GTGCTTGGGCCTGGTTAC----CTCCTAAGAGGTGCTTTGACGCGCGTGCCATATTTCGT
CAGAGCCCACGCTCTGCTGAGAATGTGCACTATGGTGAGGCACCTCGCGGGGGGTAGGTA
CGTCCAGATGGCGCTATTAGCCCTTGGCAGGTGGACTGGCACTTACATCTATGACCACCT
CACCCCTATGTCGGATTGGGCTGCTAGCGGCCTGCGGGACTTGGCGGTCGCTGTGGAGCC
TATCATCTTCAGTCCGATGGAGAAGAAAGTCATCGTTTGGGGAGCGGAGACGGCTGCGTG
CGGGGACATCTTGCACGGACTTCCCGTGTCCGCCCGACTCGGTCGGGAGATCCTCCTTGG
CCCAGCTGATGGCTACACCTCCAAGGGGTGGAAGCTTCTCGCCCCCATCACCGCTTACGC
CCAGCAGACACGAGGTCTCTTGGGCTCTATAGTGGTGAGCATGACGGGGCGTGACAAGAC
AGAACAGGCC---GGGGAGGTCCAAGTCCTGTCCACAGTCACTCAGTCCTTCCTCGGAAC
ATCCATTTCGGGGGTCTTATGGACTGTTTACCACGGAGCTGGCAACAAGACACTAGCCGG
CTCGCGGGGCCCGGTCACGCAGATGTACTCGAGCGCCGAGGGGGACTTGGTCGGGTGGCC
CAGCCCTCCTGGGACCAAATCTTTGGAGCCGTGTACGTGTGGAGCGGTCGACCTGTATTT
GGTCACGCGGAACGCTGATGTCATCCCGGCTCGAAGACGCGGGGACAAGCGGGGAGCGCT
GCTCTCCCCGAGACCCCTTTCGACCTTGAAGGGGTCCTCGGGGGGACCTGTGCTTTGCCC
TAGGGGCCACGCTGTCGGAATCTTCCGGGCAGCTGTGTGCTCTCGGGGTGTGGCTAAGTC
CATAGATTTCATCCCCGTTGAGACGCTCGACATCGTCACGCGGTCTCCCACCTTTAGTGA
CAACAGCACACCACCAGCTGTGCCCCAGACCTATCAGGTGGGGTACTTGCACGCCCCCAC
TGGCAGTGGAAAAAGCACCAAGGTCCCCGTCGCGTACGCCGCCCAGGGGTATAAAGTGCT
GGTGCTCAATCCCTCGGTGGCTGCCACCCTGGGATTTGGGGCGTACTTGTCCAAGGCACA
TGGCATCAACCCCAACATTAGGACTGGAGTCAGAACTGTGACGACCGGGGAGCCCATTAC
ATACTCCACGTATGGTAAATTCCTCGCCGATGGGGGCTGCGCAGGCGGCGCCTATGACAT
CATCATATGCGATGAATGCCACTCTGTGGATGCTACCACTATTCTCGGCATCGGGACAGT
CCTTGACCAAGCAGAGACAGCCGGGGTCAGGCTAACTGTACTGGCCACGGCCACGCCCCC
CGGGTCGGTGACAACCCCCCATCCCAATATAGAGGAGGTAGCCCTCGGACAGGAGGGTGA
GATCCCCTTCTATGGGAGGGCGTTTCCCCTGTCTTACATCAAGGGAGGGAGGCACTTGAT
TTTCTGCCACTCAAAGAAAAAGTGTGACGAGCTCGCAACGGCCCTTCGGGGCATGGGCTT
GAACGCTGTGGCATATTACAGAGGGTTGGACGTCTCCATAATACCAACTCAAGGAGATGT
GGTGGTCGTTGCCACCGACGCCCTCATGACGGGGTATACTGGAGACTTTGACTCCGTGAT
CGACTGCAACGTAGCGGTCACCCAGGCCGTAGACTTCAGCCTGGACCCCAC---------
------------------------------------------------------------
----------------------------CTTCACTATAACCACACAGACTGTCCCGCAAG
ACGCTGTCTCACGTAGTCAGCGCCGAGGGCGCACGGGTAGAGGAAGACTGGGCATTTATA
GGTATGTTTCCACTGGTGAGCGAGCCTCAGGAATGTTTGACAGTGTAGTACT--------
-----------------------------CTGTGAGTGCTACGACGCAGGAGCTGCTTGG
TATGAGCTCTCACCAGTGGAGACGACCGTCAGGCTCAGGGCGTATTTCAACACGCCTGGC
TTGCCTGTGTGCCAGGACCACCTTGAGTTTTGGGAGGCAGTTTTCACCGGCCTCACACAC
ATAGACGCTCATTTCCTTTCCCAGACAAAGCAGTCGGGGGAAAATTTCGCATACTTAGTA
GCCTATCAGGCCACAGTGTGCGCCAGGGCCAAAGCGCCCCCCCCGTCCTGGGACGTCATG
TGGAAGTGCTTGACTCGACTCAAGCCCACGCTTGTGGGCCCTACACCTCTCCTGTACCGT
TTGGGCTCTGTTACCAACGAGGTCACCCTTACACACCCCGTGACAAAATACATCGCCACA
TGCATGCAAGCTGACCTCGAGGTCATGACCAGCACGTGGGTCCTGGCTGGGGGAGTCTTA
GCAGCCGTCGCCGCGTATTGCTTAGCGACCGGGTGTGTTTCCATCATTGGCCGTTTACAC
ATCAACCAGCGAGCT-GTCGTCGCTCCGGACAAGGAGGTCCTCTATGAGGCTTTTGATGA
GATGGAGGAATGTGCCTCCAGAGCGGCTCTCCTTGAAGAGGGGCAGCGGATAGCCGAGAT
GCTGAAGTCCAAGATCCAAGGCTTATTGCAGCAAGCCTCTAAACAGGCCCAGGACATACA
ACCCGCTGTGCAAGCTTCGTGGCCCAAGATGGAGCAATTCTGGGCCAAACATATGTGGAA
CTTCATAAGCGGCATTCAGTACCTCGCAGGACTGTCAACACTGCCAGGGAACCCTGCTGT
GGCTTCCATGATGGCATTCAGCGCCGCCCTCACCAGTCCGTT-GTCAACTAGCACCACCA
TCCTTCTTAACATTCTGGGGGGCTGGCTGGCGTCCCAAATTGCGCCACCCGCGGGGGCCA
CTGGCTTTGTTGTCAGTGGCCTGGTGGGAGCTGCTGTTGGCAGCATAGGCTTGGGTAAAG
TGCTGGTGGACATCCTGGCAGGGTATGGTGCGGGCATTTCGGGGGCCCTCGTCGCGTTTA
AGATCATGTCTGGCGAGAAGCCCTCCATGGAGGATGTCATCAACTTGCTGCCTGGGATTC
TGTCTCCAGGTGCTCTGGTGGTGGGAGTCATCTGCGCGGCCATTCTGCGCCGCCATGTGG
GACCGGGGGAAGGCGCGGTCCAATGGATGAACAGGCTTATCGCCTTCGCTTCCAGAGGAA
ACCACGTCGCCCCTACTCACTACGTGACGGAGTCGGATGCGTCGCAGCGTGTCACCCAAC
TGCTTGGCTCTCTCACTATAACTAGTCTACTCAGGAGACTTCACAACTGGATCACTGAGG
ATTGCCCCATCCCATGCGCCGGCTCGTGGCTCCGCGATGTGTGGGACTGGGTCTGTACCA
TCCTAACAGACTTTAAGAACTGGCTGACCTCCAAGCTGTTCCCAAAGATGCCTGGCCTCC
CCTTTATCTCTTGCCAAAAGGGGTACAAGGGCGTGTGGGCCGGCACTGGCATCATGACCA
CACGATGCCCCTGCGGCGCCAACATCTCTGGCAACGTCCGCTTGGGCTCTATGAGAATCA
CAGGACCCAAAACCTGCATGAACACCTGGCAGGGGACCTTTCCTATCAATTGTTATACAG
AAGGCCAGTGCTTGCCGAAACCCGCGTTAAAC--TTCAAGACCGCCATCTGGAGAGTGGC
GGCCTCAGAGTACGCGGAAGTGACGCAGCACGGATCATATGCCTATATAACAGGGCTGAC
CACTGACAACTTAAAAGTCCCTTGCCAACTCCCCTCTCCAGAGTTTTTCTCTTGGGTGGA
CGGAGTACAAATCCATAGGTCCGCCCCCACACCAAAGCCGTTTTTCCGGGATGAGGTCTC
GTTCAGCGTTGGGCTCAATTCATTTGTCGTCGGGTCTCAGCTTCCCTGTGACCCTGAGCC
CGACACTGAGGTAGTGATGTCCATGCTAACAGACCCATCCCATATCACGGCGGAGGCTGC
AGCGCGGCGTTTAGCGCGGGGGTCA------CCCCCATCTGAGGCAAGCTCCTCAGCGAG
CCAGCTGTCGGCGCCATCGCTGCGAGCCACCTGCACCACCCACGGTAGGACCTATGATGT
GGACATGGTGGATGCCAACCTGTT------------CATGGGGGGCGGCGTGATTCGGAT
AGAGTCTGAGTCCAAAGTGGTCGTTCTGGACTCCCTCGACTCAATGACCGAGGAAGAGGG
CGACCTTGAGCCTTCAGTACCATCGGAGTATATGCTCCCCAGGAAGAGGTTCCCACCGGC
CTTACCGGCTT--------------------------------------GGGCGCGGCCT
GATTACAACCCACCGCTTGTGGAATCGTGGAAGAGGCCAGATTACCAACCACCCACTGTT
GCGGGCTGTGCTCTCCCCCCCCCCAAAAAGACCCCGACGCCTCCTCCAAGGAGACGCCGG
ACAGTGGGTCTGAGCGAGAGCACCATAGGAGATGCCCTCCAACAGCTGGCCATCAAGTCC
TTTGGCCAGCCCCCCCCAAG----CGGCGATTCAGGCCTTTCCACGGGGGCGGACGCCGC
CGACTCCGGCGATCGGACACCCCCTGACGAGTTGGCTCTTTCGGAGACAGGTTCTACCTC
CTCCATGCCCCCCCTCGAGGGGGAGCCTGGGGACCCAGACCTGGAGCCTGAGCAGGTAGA
GCTTCAACCTCCTCCCCAGGGGGGGGAGGCAGCTC-CCGGCTCGGACTCGGGGTCCTGGT
CTACTTGCTCCGAGGAGG---ATGACTCCGTCGTGTGCTGCTCCATGTCATATTCCTGGA
CCGGGGCTCTAATAACTCCTTGTAGCCCCGAAGAGGAAAAGTTGCCAATTAACTCCTTGA
GCAACTCGCTGTTGCGATACCATAACAAGGTATACTGTACTACATCAAAGAGTGCCTCAC
TAAGGGCTAAAAAGGTAACTTTTGATAGGATGCAAGTGCTCGACGCCTATTATGATTCAG
TCTTAAAGGACATCAAGCTAGCGGCCTCCAAGGTCAGCGCAAGGCTCCTCACCTTAGAGG
AGGCGTGCCAATTGACCCCACCCCACTCTGCAAGATCCAAGTATGGGTTTGGGGCTAAGG
AGGTCCGCAGCTTGTCCGGGAGGGCCGTCAACCACATCAAGTCCGTGTGGAAGGACCTCT
TGGAAGACTCACAAACACCAATTCCTACAACCATCATGGCCAAAAATGAGGTGTTCTGCG
TGGACCCCGCCAAGGGGGGTAAAAAACCAGCTCGCCTTATCGTTTACCCTGACCTCGGCG
TCAGGGTCTGCGAGAAGATGGCCCTTTATGATGTCACACAAAAGCTTCCTCAGGCGGTGA
TGGGGGCTTCTTATGGCTTCCAGTACTCCCCCGCTCAGCGGGTGGAGTTTCTCTTGAAGG
CATGGGCGGAAAAGAGAGACCCTATGGGTTTTTCGTATGATACCCGATGCTTTGACTCAA
CCGTCACTGAGAGAGACATCAGGACTGAGGAGTCCATATACCAGGCCTGCTCCTTACCCG
AGGAGGCCCGAACTGCCATACACTCGCTGACTGAGAGACTCTATGTGGGAGGGCCCATGT
TCAACAGCAAGGGCCAGTCCTGCGGGTACAGGCGTTGCCGCGCCAGCGGGGTGCTTACCA
CTAGTATGGGGAACACCATCACATGCTATGTAAAAGCCCTAGCGGCTTGCAAGGCTGCGG
GGATAATTGCGCCCACGATGCTGGTATGCGGCGACGACTTGGTCGTCATCTCAGAAAGCC
AGGGGACTGAGGAGGACGAGCGGAACCTGAGAGCCTTCACGGAGGCTATGACCAGGTATT
CTGCCCCTCCTGGTGACCCCCCCAGACCGGAATATGACCTGGAGCTAATAACATCTTGTT
CCTCAAACGTGTCTGTGGCACTTGGCCCACAGGGCCGCCGCAGATACTACCTGACCAGAG
ACCCCACCACTTCAATTGCCCGGGCTGCCTGGGAAACAGTTAGACACTCCCCTGTCAATT
CATGGCTGGGAAACATCATCCAGTACGCTCCAACCATATGGGTTCGCATGGTCCTGATGA
CACACTTCTTCTCCATTCTCATGGCCCAGGACACCCTAGACCAGAACCTTAACTTTGAAA
TGTACGGATCGGTGTACTCCGTGAGTCCTCTGGACCTCCCAGCCATAATTGAAAGGTTAC
ACGGGCTTGACGCCTTCTCTCTGCACACATACACTCCCCACGAACTGACGCGGGTGGCTT
CAGCCCTCAGAAAACTTGGGGCGCCACCCCTCAGAGCGTGGAAGAGTCGGGCGCGTGCAG
TTAGGGCGTCC--------CTCATCTCCCGTGGGGGGAGGGCGGCCGTTTGCGGTCGGTA
CCTCTTCAACTGGGCGGTGAAGACCAAGCTCAAACTCACTCCTTTGCCGGAGGACACGCC
TCCTGGATTTGTCCAGTTGGTTTACCGTCGGCGCCGGCGGGGGCGACATTT-ATCACAGC
GTG-TCGCGTGCCCGACCCCGCCTATTACTCCT-TAGCCTACTCCTACTTTCTGTAGGGG
TAGGCCTCTTCCTACTCCCCGCTCGATAGAGCGGCACACATTAGCT--ACACTCCATAGC
TA---ACTGTTCCT------------------------TTTTTTTTTTTTTTTTTTATTT
TTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTCCCTCTTT-----------------CTT
CCCTTCTCATCTTATTCTACTTTCTTTCTTGGTGGCTCCATCTTAGCCCTGGTCACG-GC
TAGCTGTGAAAGGTCCGTGAGC-CGCATGACT-GCAGAGAGTGCCGTAACTGGTCTCTCT
GCAGATCATGT--
> 6:1-9661 + hcv-half1.fasta
-ACCCG-CCCCTAATAGGGGCGACACTCCGCCATGAATCACTCCCCTGTGAGGAACTACT
GTCTTCACGCAGAAAGCGTCTAGCCATGGCGTTAGTATGAGTGTCGTACAGCCTCCAGGC
CCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCG
GGAAGACTGGGTCCTTTCTTGGATAAA-CCCACTCTATGCCCGGCCATTTGGGCGTGCCC
CCGCAAGACTGCTAGCCGAGTAGCGTTGGGTTGCGAAAGGCCTTGTGGTACTGCCTGATA
GGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCACCATGAGCACAACTCCTAA
ACCTCAAAGAAAAACCAAAAGAAACACTAACCGTCGCCCACAAGACGTTAAGTTTCCGGG
CGGCGGCCAGATCGTTGGCGGAGTATACTTGTTGCCGCGCAGGGGCCCCAGGTTGGGTGT
GCGCGCGACAAGGAAGACTTCGGAGCGGTCCCAGCCACGTGGAAGGCGCCAGCCCATCCC
TAAAGATCGGCGCTCCACTGGCAAGTCCTGGGGAAAACCAGGATACCCTTGGCCCCTGTA
TGGGAATGAGGGGCTCGGCTGGGCAGGATGGCTCCTGTCCCCCCGAGGTTCTCGTCCCTC
TTGGGGCCCCAATGACCCCCGGCACAGGTCGCGCAACGTGGGTAAAGTCATCGACACCCT
AACGTGCGGCTTTGCCGACCTCATGGGGTACATCCCCGTCGTAGGCGCCCCGCTTGGCGG
CGTCGCCAGAGCTCTCGCGCATGGCGTGAGAGTCCTGGAGGACGGGGTTAATTTTGCAAC
AGGGAACTTGCCTGGTTGCTCTTTTTCTATCTTCTTGCTGGCTCTGCTGTCCTGCATCAC
CACACCGGTCTCTGGCGCCCAAGTGAGGAACACCAGTTCCAGCTATATGGTGGCCAATGA
CTGTGCTAATGACAGCATCACCT----GGCAGCTCGACGCTGCGGTCCTCCACGTCCCCG
GGTGCGTCCCGTGCGAGAAGGTGGGGGACACATCTCGGTGCTGGATACCGGTTTCACCAA
ACGTGGCCGTGCGGCAGCCCGGTGCCCTCACGCGAGGCTTGCGGACGCACATAGACATGG
TGGTAATGTCCGCCACGCTCTGCTCCGCTCTCTACGTGGGGGACCTTTGTGGTGGGGTGA
TGCTCGCAGCCCAGATGTTCATTGTCTCGCCACAGCGCCACTGGTTTGTGCAAGAATGCA
ATTGCTCCATCTACCCCGGTCACGTCAGTGGACACCGCATGGCATGGGACATGATGATGA
ACTGGTCGCCCACGGCTACCATGATTCTGGCGTACGTGATGCGCGTCCCCGAGGTCATCA
TAGACATCATTAGCGGGGCTCACTGGGGCGTCATGTTTGGCTTGGCCTACTTCTCTATGC
AGGGAGCGTGGGCGAAAGTCGTTGTCATCCTTCTGCTGGCCGCTGGGGTCGACGCGGG--
-CACCTATGCTGTTGGGGGTTCTACCGCGCACACCACCAAAGGCATCGCCAGCTTCTTCT
CCCCTGGCGCCCGGCAGAACATCCAGCTCATTAACACCAATGGCAGTTGGCACATCAACC
GCACTGCCCTGAACTGCAATGAATCCCTGAACACCGGCTTTCTTGCGGCCCTGTTCTACG
CCAACCGCTTCAACTCGTCAGGATGTCCTGAACGCCTGTCCGCCTGCCGTAATATCGAGG
ACTTCCGGATAGGATGGGGCACATTGCAATACGAGAATAATGTCACCAATTCAGAGGATA
TGAGACCATATTGCTGGTACTACCCACCAAGACAGTGTGGCATAGTCCCCGCGAGGTCTG
TATGTGGCCCAGTGTACTGTTTCACCCCCAGCCCAGTAGTAGTGGGCACGACCGACAGAC
TCGGAGTGCCTACCTACACGTGGGGAGAGAATGAGACAGATGTCTTCCTATTGAACAGCA
CCCGACCACCGTCGGGCTCGTGGTTCGGCTGCACGTGGATGAACTCCACTGGTTTCACCA
AAACATGCGGTGCACCACCTTGCCGCATTAGAGCTGACTTCAACGCCAGCGCGGACCTGT
TGTGCCCCACGGACTGTTTTAGGAAGCATCCTGACGCCGCTTACTTCAGATGTGGCTCTG
GGCCCTGGCTCACGCCAAGATGTTTGGTCGATTACCCCTACAGGCTCTGGCATTACCCCT
GCACAGTTAACTATACCATCTTCAAAATAAGGATGTATGTGGGGGGAGTTGAGCACAGGC
TTGCGGCTGCATGCAACTTCACTCGCGGGGATCGTTGCGACTTGGAGGACAGAGACAGGA
GTCAACTGTCTCCTTTGTTGCACTCCACCACGGAATGGGCCATTTTACCCTGCACTTACT
CAGACCTGCCCGCTTTGTCGACCGGTCTTCTCCACCTCCACCAAAACATCGTGGATGTAC
AATACATGTATGGCCT---GTCACCTGCTCTTACAAAATACATCGTTCGATGGGAGTGGG
TTGTACTCTTATTCCTGCTCCTAGCGGACGCCAGGGTTTGCGCCTGCGTATGGATGCTCA
TTTTGCTAGGCCAGGCCGAAGCAGCACTAGAGAAGCTAGTCGTCTTGCACGCCGCG----
--AGCGCGGCCAGCTGCAATGGCTTCCTATATTTTGTCATCTTCTTCGTGGCTGCTTGGT
ACATCAAGGGCCGGGCGGTCCCCTTGGCTACCTATTCCCTCACCGGTCTATGGTCTTTCT
GCCTACTGCTCCTGGCATTGCCCCAACAGGCTTATGCGTATGATACATCTGCGCACGGAC
AGAT-------AGGCGCGACTCTGCTAATACTGATTACTCTCTTTACACTCACCCCGGCG
TATAAGACCCTTGTCAGCCGGTTTTTATGGTGGCTGTGCTATCTTCTGACCCTGGGGGAA
GCCATGGTCCAGGAGTGGGCACCACCTTTGCAGGTGCGCGGTGGCCGTGATGGCATCATA
TGGGCCGCCGCCATATTCTGCCCGGGCGTGGTGTTTGACATAACCAAGTGGCTCCTAGCG
TTGCTTGGGCCTGCTTAT----CTCCTAAGAGATGCTTTGACGCGTGTGCCGTACTTCGT
CAGAGCTCACGCTCTGCTGAGGATATGCACTATGGTAAGGCATCTCGCGGGGGGTAGGTA
CGTCCAGATGGCGCTACTAGCCCTTGGTAGGTGGACTGGCACTTACATCTATGACCACCT
CAGCCCCATGTCGGATTGGGCTGCCAATGGCCTGCGGGACTTGGCGGTCGCAGTGGAGCC
TATCATCTTCAGTCCGATGGAGAAGAAAGTCATCGTCTGGGGAGCGGAGACGGCTGCATG
TGGGGACATACTACACGGACTTCCCGTGTCTGCCCGACTTGGTCGGGAGGTCCTCCTTGG
CCCAGCTGATGGCTACACCTCCAAGGGGTGGAGTCTTCTCGCCCCCATCACTGCTTACGC
CCAGCAGACGCGGGGTCTTTTGGGCGCTATAGTGGTGAGCATGACGGGGCGCGACAAGAC
AGAACAGGCC---GGGGAAATTCAGGTCCTGTCTACAGTCACTCAGTCCTTCCTCGGAAC
ATCCATCGCGGGGGTCTTATGGACTGTCTATCATGGGGCTGGCAACAAGACCTTAGCTGG
CTCACGGGGTCCAGTCACGCAGATGTACTCCAGTGCCGAGGGGGACTTGGTGGAGTGGCC
CTCCCCTCCTGGGACTAAGTCTTTGGAGCCGTGCACGTGTGGAGCGGTCGACCTGTACCT
GGTCACGCGGAACGCTGACGTCATCCCGGCTCGAAGACGTGGGGACAAGCGGGGAGCACT
ACTCTCCCCGAGACCACTTTCGACCTTAAAAGGGTCCTCGGGGGGGCCGGTGCTTTGCCC
CAGGGGCCACGCTGTCGGGATCTTCCGGGCAGCTGTGTGCTCTCGGGGCGTGGCTAAGTC
CATAGATTTCATCCCCGTTGAGACACTCGACATCGTGACGCGGTCCCCCACCTTTAGTGA
CAACAGCACACCACCTGCTGTGCCCCAGACCTATCAGGTCGGGTACTTACATGCCCCGAC
TGGTAGTGGAAAGAGCACCAAAGTCCCTGTCGCTTACGCCGCCCAGGGGTATAAAGTGCT
AGTGCTCAATCCCTCGGTGGCCGCCACCCTGGGATTCGGGGCGTACCTGTCCAAGGCACA
TGGCATCAATCCCAATATCAGGACTGGAGTCAGGACTGTGACGACCGGAGCGGCCATCAC
GTACTCCACATACGGCAAATTCCTCGCCGATGGGGGCTGCTCGGGCGGCGCTTATGATAT
CATCATATGCGATGAGTGCCATTCCGTGGATGCTACCACCATCCTCGGCATCGGAACAGT
CCTCGACCAAGCAGAGACAGCCGGGGTCAGGTCAACTGTGCTGGCTACGGCCACGCCCCC
TGGGTCGGTGACAACCCCCCACCCCAATATAGAGGAGGTGGCCCTCGGGCAGGAGGGTGA
GATTCCCTTCTACGGGAGGGCGATTCCCCTGTCTTACATCAAGGGAGGGAGACACCTGAT
CTTCTGCCACTCAAAGAAAAAGTGTGACGAGCTCGCGGCGGCCCTTCGGGGTATGGGCTT
GAACGCAGTGGCATACTACAGAGGGTTGGACGTATCCATAATACCAACTCAGGGGGATGT
GGTGGTCGTCGCCACCGACGCCCTCATGACAGGATACACTGGGGACTTTGACTCTGTGAT
CGACTGCAACGTAGCGGTCACTCAAGTTGTAGACTTCAGTTTGGACCCGAC---------
------------------------------------------------------------
----------------------------CTTCACTATAACCACACAGACCGTCCCTCAAG
ACGCCGTCTCACGTAGCCAGCGCCGGGGGCGTACGGGTAGGGGAAGACTGGGCATTTATA
GGTACGTGTCCACTGGTGAGCGAGCCTCGGGAATGTTTGACAGCGTAGTGCT--------
-----------------------------CAGTGAGTGCTACGACTCAGGGGCCGCATGG
TACGAGCTCACACCAGCGGAGACCACCGTCAGGCTCAGAGCGTACTTCAACACACCTGGC
TTGCCTGTGTGCCAAGACCATCTTGAGTTTTGGGAGGCAGTTTTCACCGGCCTTACACAC
ATAGATGCCCACTTCCTTTCCCAAACAAAGCAAGCGGGGGACAATTTCGCATACCTAACA
GCCTACCAGGCTACAGTGTGTGCCAGGGCCAAAGCCCCTCCGTCGTCCTGGGACGTCATG
TGGAAGTGCTTGACTCGACTCAAGCCCACGCTCGTGGGCCCTACACCTCTCCTGTACCGT
TTGGGCCCTGTCACCAACGAGGTCACTCTCACACATCCTGTGACGAAATACATCGCCACT
TGCATGCAAGCCGACCTTGAGGTCATGACCAGCACGTGGGTCTTGGCTGGGGGAGTCTTG
GCGGCCGTCGCTGCGTATTGCTTAGCGACCGGGTGTGTTTCCATCATCGGCCGCTTGCAC
ATCAACCAGAGAGCT-GTCGTTGCACCAGACAAAGAGGTCCTCTATGAGGCTTTTGATGA
GATGGAGGAGTGTGCCTCTAGAGCGGCCCTCATTGAAGAGGGGCAGCGGATAGCCGAGAT
GCTGAAGTCCAAAATCCAAGGTCTATTGCAGCAAGCCTCCAAACAAGCCCAAGACATACA
ACCCGCCGTGCAGGCTTCATGGCCCAAGGTGGAGCAGTTCTGGGCCAAACACATGTGGAA
CTTCACTAGCGGCATTCAATACCTTGCAGGACTGTCAACACTGCCAGGGAACCCCGCTGT
GGCCTCCATGATGGCATTCAGTGCCGCCCTCACCAGTCCGTT-GTCAACTAGCACCACTA
TCCTTCTCAACATTTTGGGAGGCTGGCTGGCGTCCCAAATCGCGCCACCCGCAGGGGCCA
CTGGCTTCGTCGTCAGTGGCCTGGTGGGGGCTGCCGTAGGCAGCATAGGCTTGGGTAAGG
TGCTGGTGGACATCCTGGCAGGGTATGGTGCGGGCATCTCGGGAGCTCTCGTCGCATTCA
AGATCATGTCTGGCGAGAAGCCCTCCATGGAGGACGTCGTCAACCTGCTGCCTGGAATTC
TGTCTCCGGGTGCTTTGGTGGTGGGAGTCATCTGCGCGGCCATTCTACGCCGCCACGTGG
GACCGGGGGAAGGCGCAGTCCAATGGATGAACAGGCTCATTGCCTTCGCTTCCAGAGGAA
ACCACGTCGCCCCCACCCACTACGTGACGGAGTCGGATGCGTCGCAGCGCGTGACCCAAC
TACTCGGCTCCCTTACCATAACTAGTCTGCTTAGAAGACTCCACAATTGGATTACCGAGG
GCTGCCCCATCCCGTGCAGCGGCTCGTGGCTCCGCGATGTATGGGACTGGGTCTGCACCA
TCTTAACAGACTTTAAAAACTGGCTGACCTCTAAATTGTTCCCAAAGATGCCTGGCCTCC
CCTTTGTCTCTTGCCAAAAGGGGTACAAGGGCGTATGGGCCGGCACTGGTATCATGACCA
CACGGTGTCCTTGCGGCGCCAATATCTCTGGCAATGTCCGCCTGGGCTCCATGAGAATCA
CAGGGCCTAAGACCTGCATGAACACCTGGCAAGGGACCTTTCCCATCAATTGCTACACGG
GGGGCCAGTGTGTGCCGAAGCCCGCGCCAAAC--TTCAAGACCGCCATCTGGAGGGTGGC
GGCCTCAGAGTACGCGGAGGTGACGCAACACGGGTCATACTCCTATATAACAGGACTGAC
CACAGACAACCTGAAAGTTCCTTGCCAACTACCTTCTCCAGAGTTCTTTTCCTGGGTGGA
CGGAGTGCAGATCCACAGGTTCGCCCCCACACCGAAGCCGTTTTTCCGGGATGAGGTCTC
GTTTTGCGTCGGGCTTAACTCATTTGTCGTCGGGTCTCAGCTTCCTTGTGACCCTGAACC
CGACACAGACGTATTAATGTCCATGCTAACAGATCCATCTCATATCACGGCGGAGACCGC
AGCGCGGCGCTTGGCGCGGGGGTCA------CCCCCATCTGAGGCAAGCTCCTCAGCGAG
CCAGTTATCGGCGCCATCGCTGCGAGCCACCTGCACCACCCACGGCAAGACCCATGATGT
GGACATGGTGGATGCCAACCTATT------------CATGGGGGGCGATGTCACTCGGAT
AGAGTCCGAGTCCAAAGTGGTCGTTCTGGACTCTCTCGATCCAATGGTCGAAGAAGAGGG
CGACCTCGAGCCTTCGATACCATCAGAGTACATGCTCCCCAAAAAGAAGTTTCCACCAGC
CTTACCGCCTT--------------------------------------GGGCGCGGCCA
GACTACAACCCACCGCTTGTGGAATCACGGAAGAAGCCAGACTATCAACCGCCCACTGTT
GCGGGCTGTGCTCTCCCCCCCCCTAAGAAGACCCCGACGCCCCCCCCAAGGAGGCGCCGG
ACAGTGGGTCTGAGTGAGAGCACCATAGGGGATGCCCTACAACAGCTGGCTATTAAGGCT
TTTGGCCAGCCCCCCCCAAG----CGGAGATTCAGGCCTGTCCACGGGGGCGGACGCCGC
CGACTCCGGCAGTCGGACGCCCCCTGATGAGTCGGCTCTTTCGGAGACAGGTTCCATCTC
CTCCATGCCCCCCCTCGAGGGGGAGCCTGGAGATCCAGACCTGGAGCCTGAGCAGGTAGA
GCGTCAACCTCCCCCCCAGGGGGGGGAAGTAGCTC-CCGGCTCGGACTCGGGGTCCTGGT
CCACTTGCTCCGGCGAGG---ACGACTCCGTCGTGTGCTGCTCCATGTCATACTCCTGGA
CCGGGGCTCTAATAACTCCTTGTAGCCCCGAAGAGGAAAAGTTACCGATTAACCCTTTGA
GCAACTCGCTGTTGCGATACCACAACAAGGTGTACTGTACCACATCAAAGAGCGCCTCAC
TGAGGGCTAAAAAGGTAACTTTTGATAGGATGCAAGTGCTCGACGCCTATTACGACTCAG
TCTTAAAGGACATCAAGCTAGCGGCCTCCAAGGTCACTGCAAAGCTCCTCACCTTGGAGG
AGGCATGCCAGTTAACCCCACCCCACTCTGCAAGATCCAAGTACGGGTTTGGGGCTAAGG
AGGTCCGCAGCTTGTCCGGGAGGGCCGTTAACCACATCAAGTCCGTGTGGAAGGACCTCC
TGGAGGACTCACAAACACCAATTCCCACAACCATCATGGCCAAAAATGAGGTGTTCTGCG
TGGACCCCACCAAAGGGGGTAAGAAAGCAGCTCGCCTTATCGTTTACCCTGACCTCGGCG
TCAGGGTCTGCGAGAAGATGGCCCTTTATGATGTCACACAAAAACTCCCTCAGGCGGTAA
TGGGGGCTTCTTATGGATTCCAGTACTCCCCCGCCCAGCGGGTGGAGTTTCTCTTGAAGG
CATGGGCGGAAAAGAAAGACCCTATGGGTTTTTCGTATGATACCCGATGCTTTGACACAA
CCGTCACCGAGAGAGACATCAGGACTGAGGAGTCCATATACCGGGCCTGTTCCCTGCCCG
AGGAGGCCCACACTGCCATACACTCGCTAACTGAGAGACTTTACGTGGGAGGGCCTATGT
TTAACAGCAAGGGCCAGTCCTGCGGGTACAGGCGTTGCCGCGCCAGTGGGGTGCTCACCA
CTAGCATGGGGAACACCATCACGTGCTACGCAAAAGCCCTAGCGGCCTGCAAGGCTGCAG
GGATAGTTGCGCCCACAATGCTGGTATGCGGCGACGACTTGGTTGTCATCTCAGAAAGCC
AGGGGACCGAGGAGGATGAGCGGAACCTGAGAGCCTTCACGGAGGCTATGACCAGGTATT
CTGCCCCTCCTGGCGACCCCCCCAGACCGGAATATGACTTGGAGCTGATAACATCTTGTT
CCTCAAATGTGTCTGTGGCGTTGGGCCCACAAGGCCGCCGCAGATACTACCTGACCAGAG
ACCCTACCACTCCAATCGCCCGGGCTGCCTGGGAAACAGTTAGACACTCCCCTGCCAATT
CATGGCTGGGAAACATCATCCAGTACGCCCCGACCATATGGGCTCGCATGGTCCTGATGA
CACACTTCTTCTCCATCCTCATGGCCCAAGACACTCTGGACCAGAACCTCAATTTTGAGA
TGTATGGAGCGGTGTACTCCGTAAGTCCTTTGGACCTCCCAGCCATAATTGAAAGGTTAC
ACGGGCTCGACGCTTTCTCTCTGCACACATACTCTCCCCACGAACTGACGCGGGTGGCTT
CAGCCCTCAGAAAACTTGGGGCGCCACCTCTCAGAGCGTGGAAGAGTCGGGCGCGTGCAG
TCAGAGCGTCC--------CTCATCTCCCGTGGAGGGAGAGCGGCCGTTTGCGGTCGGTA
TCTCTTCAATTGGGCGGTGAAAACCAAGCTCAAACTCACTCCATTGCCGGAGGACGCGCC
TCCTGGATTTATCCAGCTGGTTCACCGTCGGCGCCGGCGGGGGCGACATTT-ATCACAGC
GTG-TCGCGTGCCCGACCCCGCTTATTACTCCT-TAGCCTACTCCTACTTTCCGTAGGGG
TAGGCCTCTTCCTACTCCCCGCTCGGTAGAGCGGCACACATTAGCT--ACACTCCATAGC
TA---ACTGTTCCT------------------------TTTTTTTTTTCTTTTTTTATTT
TTTTTTTTTTTTTTTTTCCTTCTTT--------------------------------CTT
TCTTTCTTACCTTACTTTACTTTCTTTTCTGGTGGCTCCATCTTAGCCCTAGTCACG-GC
TAGCTGTGAAAGGTCCGTGAGC-CGCATGACT-GCAGAGATTGCCGTAACTGGTATCTCT
GCAGATCATGT--
> 7:1-9680 + hcv-half1.fasta
-ACCCG-CCCCTAATAGGGGCGACACTCCGCCATGAATCACTCCCCTGTGAGGAACTACT
GTCTTCACGCAGAAAGCGTCTAGCCATGGCGTTAGTATGAGTGTCGTACAGCCTCCAGGC
CCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCG
GGAAGACTGGGTCCTTTCTTGGATAAA-CCCACTCTATGCCCGGCCATTTGGGCGTGCCC
CCGCAAGACCGCTAGCCGAGTAGCGTTGGGTTGCGAAAGGCCTTGTGGTACTGCCTGATA
GGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCACCATGAGCACAAATCCTAA
ACCTCAAAGACAAACCAAAAGAAACACCAGCCGTCGCCCACAAGACGTTAGGTTTCCGGG
CGGCGGCCAGATCGTTGGCGGAGTATACTTGTTGCCGCGCAGGGGCCCCAGGTTGGGTGT
GCGCGCGACAAGGAAGACTTCGGAGCGGTCCCAGCCACGTGGGAGGCGCCAGCCCATCCC
CAAAGATCGGCGCTCCACTGGCAAGTCCTGGGGAAGACCAGGATACCCTTGGCCCCTATA
TGGGAATGAGGGACTCGGCTGGGCAGGATGGCTCCTGTCCCCCCGAGGTTCCCGCCCCTC
TTGGGGCCCCAATGACCCCCGGCATAAGTCGCGCAACGTGGGTAAGGTCATCGATACCCT
AACGTGCGGCTTTGCCGACCTCATGGGGTACATCCCCGTCGTAGGCGCCCCGCTTGGTGG
CGTTGCCAGAGCTCTCGCGCACGGCGTGAGAGTCTTGGAGGACGGGGTTAACTATGCAAC
AGGGAACCTACCTGGTTGCTCTTTTTCTATTTTCTTGCTGGCACTACTGTCTTGCATCAC
TGTCCCGGTCTCTGCTGTCCAAGTGAAGAACACCAGTGACATCTACATGGTGACTAATGA
CTGTTCCAATGACAGCATCACCT----GGCAGCTCCAGACCGCGGTCCTCCACGTTCCCG
GGTGCGTCCCGTGTGAAAGAATGGGAGATACATCACGGTGCTGGATACCGGTCTCACCAA
ACGTGGCTGTGCGGCAGCGCGGCGCCCTCACGCAGGGCTTGCGGACGCACATCGACATGG
TTGTGATGTCCGCCACACTCTGCTCTGCCCTTTACGTGGGGGACTTCTGCGGAGGGCTGA
TGCTCGCAGCCCAGATGTTTGTTGTCTCGCCACAGCACCATTGGTTTGTGCAAGAATGCA
ATTGCTCCATCTATCCTGGCACCATCACTGGACATCGTATGGCATGGGACATGATGATGA
ACTGGTCGCCCACGACCACCATGATCCTCGCGTACGCGATGCGTGTTCCCGAGACCATCG
TGGACATCATTAGCGGGGCTCACTGGGGCGTCATGTTCGGCCTGGTCTATTTCTCCATGC
AAGGAGCGTGGGCGAAGGTCGCTGTCATCCTTCTGTTGACCGCTGGGGTTGACGCGCA--
-CACCGTCACAGTTGGGGGTAGCGCCGGGTTCACCACCTCAAGCCTCACCGCCCTTTTCG
TTCGTGGCCCCCAGCAGAAAATTCAGCTCATTAACAACAATGGCAGTTGGCACATCAACA
GCACTGCCCTGAATTGCAATGACTCCTTGCAGACCGGCTTCATCGCGTCCCTGTTCTACG
CCAAGAACTTCAACTCGTCAGGATGTCCCGAACGCATGTCCGCCTGCCGTAATATCGAGG
CCTTCCGGATAGGATGGGGCGCCTTGCAGTATGAAGATAATGTCACCAACCCAGAGGATA
TGAGACCATACTGCTGGCATTATCCACCAAAACAGTGTGGCATAGTCCCCGCGAGGTCTG
TGTCCGGCCCAGTGTACTGTTTCACCCCCAGCCCAGTGGTAGTGGGCACGACCGACAAAC
TTGAAGCGCCTACTTACACGTGGGGAGAGAATGAGACAGATGTCTTCTTGTTGAACAGCA
CCCGACCGCCGCAGGGGTCATGGTTCGGCTGTACGTGGATGAACTCCACCGGTTTCACCA
AGACTTGTGGCGCACCACCTTGCCGCACTAGAGCCGACTTCAATGCCAGCACGGACCTGT
TGTGCCCCACGGACTGTTTTAGGAAGCATCCTGAGGCCACTTACATCAAATGTGGTTCTG
GGCCATGGCTCACGCCAAGGTGCCTGGTTGACTACCCCTACAGGCTCTGGCATTACCCTT
GCACAGTCAACTACACCGTCTTCAAGATAAGGATGTATGTGGGGGGGGTTGAGCACAGGC
TCACGGCCGCGTGCAATTTTACTCGTGGGGACCGTTGCAACTTGGAGGACAGGGACAGAA
GTCAACTGTCTCCTTTGCTGCACTCCACCACGGAATGGGCCATTTTGCCCTGTTCTTACT
CAGACTTGCCCGCTTTGTCAACTGGCCTTCTTCACCTCCACCAAAATATCGTGGATGTGC
AATACATGTATGGTCT---GTCACCTGCCCTCACAAAATATGTCGTTCGTTGGGAGTGGG
TAGTACTCCTGTTCCTGCTCCTAGCGGACGCCAGGGTCTGCGCCTGCCTGTGGATGCTCA
TCTTGTTGGGACAGGCCGAGGCAGCATTAGAGAAGCTGGTTGTCTTGCACGCTGCG----
--AGCGCAGCTAGCTGCAATGGCTTCCTGTATTTTGTCATCTTTTTCATAGCTGCTTGGC
ACATCAAGGGTCGGGCGGTCCCCTTGGCTGCCTATTCCCTCACTGGCCTATGGCCTTTCT
GCCTATTGCTCCTAGCACTGCCCCAACAGGCTTATGCCTATGACGCATCTGCGCATGGAC
AGAT-------AGGTGAGGCCTTGCTGGTGTTGATCACCCTCTTTACACTCACCCCGGGG
TATAAGATCCTTCTCAGCCGGTCCCTGTGGTGGTTGTGCTATCTCCTGACCCTAGGGGAA
GCCATGGTCCAGGAATGGGCACCATCCATGCAGGCGTGTGGTGGCCGTGATGGCATCATA
TGGGTCGCCACCATACTTTGCCCGGGCGTGGTGTTTGACATAACCAAGTGGCTCTTGGCG
GTGCTTGGGTCTAGTTAT----CTCCTAAGAGACGCTCTAACACGTGTGCCGTATTTCGT
CAGGGCTCACGCTCTGCTGAGGATGTGCACGATGGTGAGGCGCCTTGCGGGAGGTAGGTA
TGTCCAGATGGCGCTATTAGCCCTTGGTAGGTGGACCGGCACTTACATCTATGACCACCT
CACCCCTATGTCGGACTGGGCTGCTAGCGGCCTGCGGGACTTGGCGGTCGCTGTGGAGCC
CATCATCTTTAGTCCGATGGAGAAGAAGGTCATTGCCTGGGGAGCGGAGACGGCCGCATG
CGGGGATATCCTACACGGACTCCCCGTGTCCGCCCGACTCGGTAGGGAGATCCTCCTTGG
CCCAGCTGATGGCTACACCTCCAAGGGGTGGAGGCTTCTCGCCCCCATCACTGCTTACGC
CCAGCAGACACGGGGTCTCTTGGGCACCATAGTGGTGAGCATGACGGGGCGCGACAAGAC
AGAACATGCC---GGGGAAATCCAAGTCTTGTCCACAGTCACTCAGTCCTTCCTCGGAAC
ATCCATCTCGGGGGTCCTGTGGACTGTTTATCACGGAGCTGGCAACAAGACCCTAGCCAG
CTCACGGGGCCCGGTCACGCAGATGTACTCGAGTGCCGAGGGGGATCTGGTAGGGTGGCC
CAGCCCTCCTGGGACCAAATCTTTGGAGCCGTGTACGTGTGGAGCGGTCGACCTCTACCT
GGTCACGCGGAACGCTGACGTCATCCCGTCTCGAAGACGCGGGGACAAGCGGGGGGCGTT
ACTATCCCCGAGACCCCTTTCGAGCTTGAAGGGGTCCTCGGGGGGACCGGTGCTCTGCCC
CAGGGGCCACGCTGTCGGGATCTTCCGGGCAGCTGTGTGCTCTCGGGGCGTGGCTAAGTC
CATAGATTTCATCCCCGTTGAGGCACTTGACATCGCCACGCGGTCTCCCACCTTTAGTGA
CAACAGCACACCGCCAGCTGTGCCCCAGACCTATCAGGTCGGGTACCTGCATGCCCCGAC
TGGCAGTGGAAAGAGTACCAAAGTCCCTGTCGCTTACGCCGCCCAGGGGTATAAAGTGCT
AGTGCTTAATCCCTCGGTGGCTGCCACCTTGGGGTTCGGGGCATACTTGTCCAAGGCACA
TGGTATCAATCCCAATATAAGGACTGGAGTCAGAACTGTGACGACTGGGGAGCCCATCAC
ATACTCCACGTACGGCAAATTCCTCGCTGATGGGGGCTGCGCAGGCGGCGCCTATGACAT
CATCATATGCGACGAATGCCATGCTGTGGATGCTACCACCATTCTCGGCATCGGAACAGT
TCTTGACCAAGCAGAGACAGCCGGGGTCAGGCTAACTGTGCTGGCCACGGCCACGCCCCC
CGGGTCGGTGACAACTCCTCACCCCAATATAGAGGAGGTAGCCCTCGGCCATGAGGGTGA
GATCTCCTTCTATGGGAAGGCAATTCCCCTGTCTTACATCAAGGGAGGGAGACATTTGAT
CTTTTGCCACTCAAAGAAAAAGTGTGACGAGCTCGCGGTGGCTCTTCGGAACATGGGCTT
GAACGCTGTGGCGTATTACAGAGGGTTGGACGTCTCCATAATACCAGCTCAAGGAGATGT
AGTGGTTGTCGCCACCGACGCCCTCATGACGGGGTATACTGGAGACTTTGACTCCGTGAT
CGACTGCAACGTAGCGGTCACTCAAGTCGTAGACTTCAGCCTAGACCCCAC---------
------------------------------------------------------------
----------------------------CTTCACTATAAGCACACAGACTGTCCCTCAAG
ACGCTGTCTCACGTAGTCAGCGCCGGGGGCGCACAGGTAGAGGGAGACTGGGTATTTATA
GGTATGTTTCCACCGGTGAGCGAGCCTCAGGAATGTTTGACAGTGTAGTGCT--------
-----------------------------CTGTGAGTGCTACGATGCGGGGGCTGCATGG
TATGAGCTCACACCATCGGAAACTACCGTTAGGCTTAGAGCGTATTTCAACACGCCTGGC
TTGCCCGTGTGCCAAGACCATCTTGAGTTTTGGGAGGGAGTTTTCACCGGCCTCACACAC
ATAGATGCCCACTTCCTCTCCCAGACGAAGCAGTCGGGGGAGAACTTCGCATACCTAGTA
GCCTATCAGGCTACGGTGTGCGCTAGAGCCAAAGCCCCTCCCCCGTCCTGGGACGTCATG
TGGAAGTGCTTGACTCGGCTCAAGCCCACGCTCGTGGGCCCTACACCTCTCCTGTACCGA
CTGGGCCCTGTTACCAACGAAGTCACCCTCACACATCCTGTGACAAAGTACGTTGCCACA
TGCATGCAAGCTGACCTCGAGGTCATGACCAGCACGTGGGTCCTGGCCGGAGGAGTCTTG
GCGGCCGTCGCCGCGTATTGCTTGGCGACCGGGTGTGTTTCCATCATCGGCCGTTTGCAT
ATCAACCAGCGAGCT-GTCGTCGCACCGGACAGGGAGGTCCTCTATGAGGCTTTTGACGA
GATGGAGGAATGTGCCTCTAGAGCGGCTCTCATTGAGGAGGGGCAGCGCATAGCTGAGAT
GCTGAAGTCCAAGATCCAAGGCTTGCTGCAGCAAGCCTCTAAACAGGCCCAAGACATACA
ACCCGCCGTACAGGCTTCATGGCCCAAGATGGAACAATTCTGGGCCAAACACATGTGGAA
CTTCATTAGCGGCATTCAATACCTCGCAGGACTGTCAACACTGCCAGGGAACCCCGCTGT
GGCTTCCATGATGGCATTCAGTGCCGCACTCACCAGTCCGTT-ATCAACCAGCACCACTA
TCCTTCTCAACATTTTGGGAGGCTGGTTGGCGTCCCAAATTGCGCCGCCCGCGGGGGCCA
CTGGTTTCGTCGTCAGTGGCCTGGTAGGGGCTGCCGTGGGCAGCGTAGGCCTGGGTAAGG
TGCTGGTGGACATCCTGGCAGGGTATGGTGCGGGCATCTCAGGGGCCCTCGTCGCATTCA
AGATCATGTCTGGCGAAAAGCCCTCGATGGAGGATGTCGTCAACTTGCTGCCCGGGATTC
TGTCTCCGGGTGCCCTGGTAGTGGGAGTCATCTGCGCGGCCATTCTGCGCCGCCACGTGG
GACCGGGAGAAGGCGCGGTCCAATGGATGAACAGGCTCATAGCCTTTGCGTCCAGAGGAA
ACCACGTCGCCCCTACCCACTATGTGACGGAGTCGGATGCGTCGCAGCGTGTAACCCAAC
TGCTTGGCTCCCTTACCATAACTAGCCTGCTCAGAAGACTCCACAATTGGATTACTGAGG
ATTGCCCCATCCCGTGCGCCGGCTCATGGCTGCGCGATGTATGGGACTGGGTTTGCACCA
TCCTAACAGACTTTAAAAACTGGCTGGCCTCCAAGTTGTTCCCAAGGCTGCCCGGCGTCC
CCTTTATCTCTTGCCAAAAGGGGTATAGGGGCGTGTGGGCCGGCACCGGCATCATGACCA
CACGATGTCCTTGCGGCGCCAACATCTCTGGCAATGTCCGCCTGGGCTCCATGAGAATCA
CAGGGCCTAAAACCTGCATGAACACCTGGCAGGGGACTTTTCCCATCAATTGTTACACGG
AGGGCCAGTGCATGCCGAAGCCCGCACCAAAC--TTTAAGACCGCCATCTGGAGGGTGGC
GGCCTCAGAGTACGCGGAGGTGACGCGGCACGGATCATACTCCTATATAACAGGACTGAC
CACCGACAATTTGAAGGTCCCTTGCCAAATACCTTCTCCAGAGTTCTTCTCTTGGGTGGA
CGGAGTGCAAATCCACAGGTTTGCTCCCACACCAAAGCCGTTTTTCCGGGATGAGGTCTC
GTTCTGCGTCGGGCTCAACTCATTCGTTGTCGGGTCTCAACTTCCTTGCGATCCTGAGCC
CGACGCTGACGTGTTGACGTCCATGCTAACGGATCCGTCCCATATAACGGCGGAGGCCGC
AGCGCGTCGCTTAGCGCGGGAGTCC------CCCCCATCTGAGGCAAGCTCCTCAGCGAG
CCAGCTATCGGCAGCATCGCTGCGAGCCACATGCACCACCCACGGCAAGGCCTATGATGT
GGACATGGTGGATGCCAACTTGTT------------CATGAGGGGCGATGTGACTCGGAT
AGAGTCTGAGTCCAAAGTGGTCTTTCTGGACTATCTCGACCCAGTGGTCGAAGAAGAGCG
CGACCTGGAGCCCTCGATACCATCGGAGTATTTGCTCCCTAAGAACAAGTTCCCACCAGC
CCTACCACTTT--------------------------------------GGGCACGACCT
GATTACAATCCACCGCTTGTGGAGTCGTGGAAGAGGCCAGATTACCAACCGCCCACTGTT
GCGGGCTGTGCTCTCCCCCCCCCCAAGAAGACCCCGACGCCTCCCCCAAGGAGACGCCGG
ACAGTGGGTTTGAGCGAGAGCACCATTGGAGATGCCCTCCAACAGCTGGCCGCCAAGACC
TTCGGCCAGCCCCTCCCCAG----CGGCGATTCAGGCCTTTCCACGGGGGCGGGCGCCGC
CGACTCCGGCGGTCGGACGCCCCGTGATGAGTTGGCTCTCTCGGAGACAGGTTCTATCTC
CTCCATGCCCCCTCTCGAGGGGGAGCCTGGGGATCCAGACCTGGAGCCTGAGCAGGTAGA
GCTTCAACCTCCCCCCCAGGGGGGGGAGGCAGCTC-CCGGCTCGGACTCGGGGTCCTGGT
CTACTTGCTCCGAGGAGG---ATGACTCTGTCGTGTGCTGCTCCATGTCATACTCCTGGA
CCGGGGCTCTAATAACTCCCAGTAGCCCCGAAGAGGAGAAGTTGCCAATTAACCCCTTGA
GCAACTCACTGTTGCGATACCACAACAAGGTGTACTGTACCACATCAAAGAGCGCCTCAC
AGAGGGCTAAAAAGGTAACTTTTGATAGGATGCAAGTGCCCGACGCCCATTATGACTCAG
TCTTAAAGGACATCAAGCTAGCGGCCTCCAAGGTCAACGCAAGGCTCCTCACACTGGAGG
AGGCCTGCCAATTGACCCAACCCCACTCTGCAAGATCCAAATACGGATTTGGGGCTAAGG
AGGTTCGCGGCCTGGCCGGGAGGGCCGTTAACCACATCAAGTCCGTGTGGAAGGACCTCC
TGGAAGACTCACAGACACCAATTCCTACGACCATCATGGCCAAAAACGAGGTGTTCTGCG
TGGACCCCACCAAGGGGGGTAAGAAAGCAGCTCGTCTCATCGTTTACCCTGACCTTGGCG
TCAGGGTTTGCGAGAAGATGGCCCTTTATGATGTCACACAAAAGCTTCCTCAGGCGGTGA
TGGGGGCTTCTTATGGGTTCCAATACTCCCCCGCTCAACGGGTGGAGTTTCTCTTGAAGG
CATGGGCGGAGAAGAAAGACCCCATGGGTTTTTCGTATGATACCCGATGCTTTGACTCAA
CCGTCACTGAGCGAGACATCAGAACTGAGGAGTCCATATACCAGGCCTGCTCCCTGCAGG
AGGAGGCCCGCACCGCCATACGCTCGCTGACTGAGAGACTTTACGTGGGAGGGCCCATGT
TCAACAGCAAGGGCCAGGCCTGCGGGTACAGGCGCTGCCGCGCCAGCGGGGTGCTCACCA
CTAGCATGGGGAATACCATCACATGCTATGTGAAAGCCCTAGCGGCTTGCAAAGCTGCGG
GGATAGTTGCGCCCACAATGCTGGTATGCGGCGACGACTTGGTTGTCATCTCAGAAAGCC
AGGGAACTGAGGAGGATGACCGGAACCTGAGAGCCTTCACGGAGGCTATGACCAGATATT
CTGCCCCTCCCGGTGACCCCCCCAGACCGGAATATGACCTGGAGCTGATAACATCTTGCT
CCTCAAATGTGTCTGTAGCGCTTGGCCCACAAGGCCGCCGCAGATACTACCTGACAAGAG
ACCCTACCACTCCAATCGCCCGGGCTGCCTGGGAAACAGTTAGACACTCCCCTGTCAATT
CATGGCTGGGAAACATCATCCAGTACGCTCCAACCATATGGGTTCGCATGGTCCTGATGA
CACATTTCTTTTCCATTCTCATGGCCCAAGACACCCTGGACCAGAACCTCAACTTTGAAA
TGTACGGATCGGTGTACTCCGTGAGTCCTTTGGACCTCCCAGCCATAATTGAAAGGTTAC
ACGGGCTTGACGCCTTTTCTCTGCACACATACTCTCCCCACGAGCTGACGCGAGTGGCTT
CAGCCCTCAGAAAACTTGGGGCGCCACCCCTCAGAGCGTGGAAGAGTCGGGCGCGTGCAG
TTAGGGCGTCC--------CTCATCTCCCGGGGGGGGAGAGCGGCCGTTTGCGGTCGGTA
TCTCTTCAACTGGGCGGTGAAAACCAAGCTCAAACTCACTCCATTGCCGGAGGACACGCC
TCCTGGATTTATCCAGCTGGTTTACCGTCGGCGCCGGCGGGGGCGACATTT-ATCACAAC
GTG-TCGCGCGCCCGACCCCGCTTCTTACTCCT-TAGCCTACTCCTACTTTCTGTAGGGG
TAGGCCTCTTTTTACTCCCCGCTCGGTAGAGCGGCATACATTAGCT--ACACTCCATAGC
TA---ACAGTTTCT------------------------CTTTTTTTTTTTTTCCTTATTT
TATTTTTATTTTTTTTTTTTTTTTTTTTTTTTTATTTTCT-------------TTTCCTT
TCTTTCTCACCTTACATTACTTTCTTTCTTGGTGGCTCCATCTTAGCCCTAGTCACG-GC
TAGCTGTGAAAGGTCCGTGAGC-CGCATGACT-GCAGAGAGTGCCGTAACTGGTCTCTCT
GCAGATCATGT--
> 8:1-9643 + hcv-half1.fasta
-ACCCG-CCCCTAGTAGGGGCGACACTCCGCCATGAATCACTCCCCTGTGAGGAACTACT
GTCTTCACGCAGAAAGCGTCTAGCCATGGCGTTAGTATGAGTGTCGTACAGCCTCCAGGC
CCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCG
GGAAGACTGGGTCCTTTCTTGGGTAAA-CCCACTCTATGCCCGGCCATTTGGGCGTGCCC
CCGCAAGACTGCTAGCCGAGTAGCGTTGGGTTGCGAAAGGCCTTGTGGTACTGCCTGATA
GGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCATGCACCATGAGCACAAATCCTAA
ACCTCAAAGAAAAACCAAAAGAAACACTAACCGTCGCCCACAAGACGTTAAGTTTCCGGG
CGGCGGCCAGATCGTTGGCGGAGTATACTTGTTGCCGCGCAGGGGCCCCAGGTTGGGTGT
GCGTGCGACAAGGAAGACTTCGGAGCGGTCCCAGCCACGTGGAAGGCGCCAGCCCATCCC
CAAAGATCGGCGCTCCACTGGCAAGTCCTGGGGTAAACCAGGATACCCCTGGCCCCTATA
TGGGAATGAGGGGCTCGGCTGGGCAGGATGGCTCCTGTCCCCCCGGGGTTCTCGTCCCTC
TTGGGGTCCCAATGACCCCCGGCATAGGTCGCGCAACGTGGGTAAGGTCATCGATATCCT
AACGTGCGGCCTTGCCGACCTCATGGGGTATATCCCCGTCGTGGGCGCCCCGCTTGGTGG
CGTCGCCAGAGCCCTCGCGCATGGCGTGAGAGTCCTGGAAGACGGGTGTAATTATGCAAC
AGGGAACTTACCTGGTTGCTCCTTTTCTATCTTCTTGCTGGCTCTACTGTCCTGCATCAC
TGTTCCGGTCTCTGCCGCCCAAGTGAAGAACACCAGCAGCAGCTACATGGTGACTAACGA
CTGCCACAATGACAGCATCACCT----GGCAGCTCGAGGCCGCGGTCCTCCACATCCCCG
GGTGCGTCCCATGCGAGAAAGTGGGGAACACATCTCAGTGCTGGATACCGGTCTCGCCAA
ACGTAGCCGTCCGGCAGCCCGGCGCCCTCACGCAGGGCTTGCGGACACACATCGATATGG
TTGTGATGTCCGCTACGCTTTGCTCCGCTCTCTATGTGGGGGACTTTTGCGGCGGGGTGA
TGCTCGCAGCCCAGATGTTCATTGTCTCACCGCAAACCCATTGGTTTGTTCAGGAGTGCA
ATTGCTCCATCTATCCTGGTGCCATCTCTGGACATCGTATGGCGTGGGACATGATGATGA
ACTGGTCACCTACGGTCACCATGATCCTGGCGTACGTGGTGCGCATTCCCGAGGTCATCA
TAGACATCGTTAGCGGGGCTCACTGGGGCGTCATGTTCGGCTTAGCCTACTTCTCTATGC
AGGGAGCGTGGGCGAAAGTCGTTGTCATCCTTATGCTAGCCGCAGGGGTGGACGCG----
--ACCCAAACCATCTTTAGTAGCGCCGCGCACAACGCCTACAGCCTTGCCAGAGTATTTA
CTGCTGGCGCCAAGCAGAACATCCAGCTTATTAACACCAATGGCAGTTGGCACGTCAACC
GCACTGCCTTGAATTGCAATGACTCCCTGCAGACCGGTTTTCTCGCGGCCCTGTTTTACG
TCCACCGCTTCAACTCGTCAGGATGTCCCGAACGCCTGTCCGTATGCCGCAATATTGAGA
CCTTCCGGATAGGATGGGGCACCCTGCAGTACGAGGATAACATCACCAACCCAGAGGATA
TGAGACCATATTGTTGGCACTACCCACCAGGACAGTGCGGCATAGTCCCCGCGAAGTCTG
TGTGTGGCCCAGTGTACTGCTTCACCCCCAGCCCAGTGGTGGTGGGCACGACCGATAGAA
GTGGGGTGCCCACCTACACGTGGGGAGAGAATGAGACAGATGTCTTCCTATTGAACAGCA
CCCGTCCACCGCGGGGGTCATGGTTCGGCTGCACGTGGATGAATTCCGCTGGTTTCACCA
AGACTTGCGGCGCACCACCTTGCCGTATCAGAGCTGACTTTAATGCCAGCGCGGACCTGC
TGTGCCCCACGGACTGTTTTAGGAAACATCCTGAGGCCACCTATATCAAGTGTGGGTCTG
GGCCCTGGCTCACGCCAAGGTGCCTGGTCGATTACCCCTACAGGCTTTGGCATTACCCTT
GCACAGTCAACTTTACCATCTTCAAGATAAGGATGTACGTGGGGGGGGTTGAGCACAGGC
TCACGGCCGCGTGCAATTTCACCCGTGGGGATCGTTGCAACTTAGAGGACAGAGACAGAG
GCCAATTGTCCCCCCTGCTGCACTCCACCACAGAATGGGCCATTTTGCCCTGCACTTTCT
CAGACCTGCCCGCCCTGTCGACTGGCCTTCTCCACCTCCACCAAAACATCGTGGACGTAC
AATACATGTATGGCCT---GTCGCCTGCCCTCACAAAATACGTCGTCCGATGGGAGTGGG
TAGTGCTCTTGTTCCTGCTCTTAGCAGACGCCAGGATTTGCGCTTGCGTGTGGATGCTCC
TCCTGCTGGGCCAGGCCGAAGCAGCGCTAGAGAAGCTAGTCATCTTGCACGCTGCG----
--AGCGCGGCTAGCTGCAATGGCTTCCTATACTTTGTCATCTTTTTCGTGGCTGCCTGGC
ACATCAAAGGTCGGGCAGTCCCCTTGGCCGCCTACTCTCTTACTGGCCTATGGTCCTTCT
GCCTACTGCTTCTAGCATTGCCCCAACAGGCTTATGCTTATGACGCACCTATGCATGGAC
AGCT-------GGGCGCAGCTTTGTTGGCGTTGATTACCCTCTTTACACTCACCCCGGCA
TATAAGATCCTTCTCAGCCGATGTTTGTGGTGGTTATGCTATCTTCTGACCCTGGGGGAA
ACCATGATCCAGAAGTGGGTACCACCCATGCAGGCGCGCGGTGGCCGCGATGGCATCATA
TGGGCCGCCACCATATTCTGCCCGGGTGTGGTGTTTGACATAACCAAGTGGCTTCTGGCG
CTGCTTGGGCCTGGTTGT----CTCCTGAGAGAAGCCTTGACGAGAGTGCCATATTTCGT
CAGAGCCCACGCTCTGCTGAGGGTGTGCACCATGGTGAGGCATCTCGCGGGGGGTAAGTA
TGTCCAGATGGCGCTATTGGCCCTTGGTAGATGGACTGGCACTTACATCTATGACCACCT
CACCCCTATGTCGGATTGGGCTGCCAGTGGCCTACGGGACCTGGCGGTTGCCGTGGAGCC
TATTATCTTCAGTCCGATGGAGAAGAAAGTCATCGTCTGGGGAGCAGAGACGGCCGCGTG
TGGGGACGTTCTACACGGACTTCCCGTGTCCGCCCGACTCGGTCAGGAGATCCTCCTTGG
CCCAGCTGATGGCTACACCTCCAAGGGGTGGAAGCTTCTCGCCCCTATCACCGCTTACGC
TCAACAGACACGAGGTCTCTTGGGTACTATAGTGGTGAGCATGACGGGGCGCGATAAGAC
AGAACAGGCC---GGAGAGATCCAGGTCCTGTCCACAGTCACTCAGTCCTTCCTCGGAAC
GTCCATCTCGGGGGTTTTATGGACTGTCTACCACGGAGCTGGCAACAAGACCCTAGCCGG
CTCACGGGGTCCGGTCACGCAGATGTACTCCAGTGCCGAGGGGGACCTGGTGGGGTGGCC
CAGCCCCCCTGGGACGAAGTCTTTAGAGCCGTGCACGTGTGGAGCGGTCGACCTGTACTT
GGTCACGCGGAACGCTGACGTCATTCCGGCTCGAAGACGCGGGGACAAGCGGGGAGCGTT
GCTCTCCCCGAGACCCCTTTCAACCCTGAAGGGGTCCTCGGGGGGACCGGTGCTTTGCCC
TAGGGGCCACGCTGTCGGAATCTTCCGGGCAGCCGTGTGCTCTCGAGGCGTGGCTAAGTC
CATAGACTTCATCCCCGTTGAGACACTTGACATCGTTACGCGGTCTCCCACCTTTAGTGA
CAACAGCACACCGCCGGCTGTACCCCAGACCTACCAGGTGGGGTACTTGCACGCCCCAAC
TGGCAGCGGGAAGAGTACCAAAGTCCCTGTCGCATATGCCGCTCAGGGATACAAAGTGCT
AGTGCTCAATCCCTCGGTGGCTGCTACCCTAGGGTTTGGGGCGTACTTGTCCAAGGCACA
TGGCATCAATCCTAACATCAGGACTGGAGTCAGGACTGTGACGACCGGGGAGGCTATCAC
GTACTCCACGTATGGCAAATTCCTCGCCGATGGGGGCTGCGCAGGCGGCGCCTATGACAT
CATCATATGCGATGAATGCCATTCCGTGGATGCTACCACCATTCTCGGCATTGGAACAGT
TCTTGATCAGGCAGAGACAGCCGGGGTCAGGCTAACTGTGCTGGCCACGGCCACGCCCCC
CGGGTCGGTGACTACTCCCCACCCTAACATAGAGGAGGTAGCCCTCGGGCATGAGGGTGA
GATCCCCTTCTACGGGAAGGCGTTCCCCTTGAGTTACATCAAGGGAGGGGGGCACTTGAT
CTTCTGCCATTCAAAGAAAAAGTGTGACGAGCTCGCTGTGGCCCTTCGGGGCATGGGCTT
GAACGCTGTGGCATATTACAGGGGGCTGGACGTCTCCATAATACCAACTCAGGGAGACGT
AGTGGTCGTCGCCACCGACGCCCTCATGACGGGGTGTACTGGAGACTTTGACACCGTGAT
CGACTGCAATGTAGCGGTCACTCAAGCCGTAGACTTCAGTTTAGACCCCAC---------
------------------------------------------------------------
----------------------------CTTCACCATAACCACACAGACTGTCCCCCAAG
ACGCTGTCTCACGTAGCCAGCGCCGGGGCCGTACAGGCAGAGGAAGGCTAGGCATTTATA
GGTATGTATCTACTGGTGAACGAGCCTCAGGGATGTTTGACAGTGTAGTGCT--------
-----------------------------CTGTGAGTGCTACGACGCAGGGGCTGCATGG
CATGAGCTTACACCAGCGGAGACTACCGTCAGGCTTAGGGCATATTTCAACACGCCTGGC
CTGCCTGTGTGCCAAGACCATCTTGAGTTTTGGGAGGCAGTCTTCACCGGCCTCACACAC
ATAGATGCCCACTTCCTTTCCCAAACAAAGCAAACGGGGGAGAATTTTGCATACTTGGTA
GCCTACCAGGCTACAGTGTGTGCTAGAGCCAAGGCCCCTCCCCCGTCCTGGGACGTCATG
TGGAAGTGTTTGACTCGACTCAAGCCCACGCTCGTGGGCCCTACACCTCTACTGTATCGC
TTGGGCTCCGTCACCAATGAAATCACCCTCACACATCCTGTGACAAAATACATAGCCACT
TGCATGCAAGCCGACCTCGAGGTCATGACCAGCACGTGGGTCTTGGCTGGGGGAGTCTTG
GCAGCCGTTGCCGCGTACTGCCTGGCGACCGGGTGTGTCTCCATTATCGGCCGGCTGCAC
GTCAACCAGCGAGCC-GTCGTTGCACCGGACAAGGAGGTCCTTTATGAGGCTTTTGATGA
GATGGAGGGATGTGCCTCTAGAGCGGCTCTCATTGAGGAGGGGCAACGGATAGCCGAGAT
GCTGAAGTCCAAGATCCAAGGCTTATTGCAGCAAGCCACTAAACAGACCCAGGACATACA
GCCCGCCGTGCAGGCTTCATGGCCCAAGGTGGAGCAGTTCTGGGCCAAACATATGTGGAA
TTTCATTAGCGGCATTCAATACCTTGCAGGGCTGTCAACACTGCCAGGTAACCCTGCTGT
GGCTTCCATGATGGCATTCAGTGCTGCCCTCACCAGTCCGTT-GTCAACCAGCACCACTA
TCCTTCTCAACATTTTGGGAGGCTGGCTGGCGTCCCAAATCGCGCCACCCGCGGGGGCCA
CCGGCTTCGCTGTCAGTGGCTTAGTGGGGGCTGCCGTAGGCAGCATAGGCCTGGGTAAGG
TGCTGGTGGACATCCTGGCAGGGTATGGTGCGGGCATTTCGGGGGCTCTCGTCGCATTCA
AGATCATGTCTGGCGAGAAGCCCTCCATGGAGGATGTCGTCAACCTGTTGCCCGGGATCC
TGTCTCCGGGTGCCTTGGTGGTGGGAGTCATCTGCGCCGCCATTTTGCGCCGCCACGTGG
GGCCGGGGGAAGGTGCGGTCCAATGGATGAACAGGCTCATCGCCTTTGCTTCCAGAGGAA
ACCACGTCGCCCCCACCCACTACGTGACGGAGTCAGACGCGTCGCAGCGTGTGACCCAAC
TGCTTGGCTCCCTTACCATAACTAGTCTGCTTAGAAGACTCCACAATTGGATTACTGAGG
ACTGCCCCATCCCATGCAGCGGCTCGTGGCTTCGCGATGTGTGGGACTGGGTTTGTACCA
TCCTAACAGACTTCAAAAATTGGCTAACCGCCAAGTTGTTCCCAAAGATGCCCGGCCTCC
CCTTTATCTCTTGCCAAAAGGGATATAAGGGTGTGTGGGCTGGCACTGGCATCATGACTG
CACGATGCCCTTGCGGTGCCAATATTTCTGGCAATGTCCGCCTAGGCTCCATGAGAATTA
CAGGCCCTAAGACTTGCATGAATGTTTGGCAGGGGACCTTTCCCATCAATTGTTACACGG
AGGGCCAGTGTATGCCGAAACCCGCGCCAAAC--TTCAAGACCGCCGTCTGGAGGGTGGC
GGCCTCAGAGTACGCAGAGGTGACACGGCACGGGTCATACTCCTATATAACAGGATTGAC
CACCGACAATTTAAAGGTTCCTTGCCAAATACCTTCTCCAGAGTTCTTTTCCTGGGTGGA
CGGAGTGCAAATTCACAGGTTTGCTCCCACACCAAAGCCGTTTTTCCGGGACGAGGTCTC
GTTCAGCGTTGGGCTCAATTCATTTGTCGTCGGGTCTCAGCTTCCCTGTGACCCTGAACC
CGACACAGACGTATTGACGTCCATGCTAACAGACCCATCCCATATTACGGCGGAGGCTGC
AGCGCGGCGTTTAGCGCGGGGGTCA------CCCCCGTCTGAGGCAAGCTCCTCAGCTAG
CCAGCTATCGGCAGTGTCGCTGCGAGCCACCTGCGCCACCCATGGCGAGGCCTATGACGT
GGATATGGTGGATGCCAACCTGTT------------CATGAGGGGCGAGGTGACCCGGAT
AGAGTCCGAGTCCAAAGTGGTCATTCTGGACTATCTCGACCCAATGACCGCGGAAGAGAG
TGACCTCGAGCCCTCGATACCATCAGAGTACATGCTCCCCAGGAACAGGTTCCCACCAGC
CTTACCGGCCT--------------------------------------GGGCACGGCCT
GACTACAATCCGCCGCTTGTGGAGTCGTGGAAGAGACCGGATTACCAACCGCCCACTGTT
GCGGGCTGTGCTCTCCCCCCTCCCAAGAAGATCCCGACGCCTCCCCCAAGGAGACGCCGG
ACGGTGGGTCTGAATGAGAGCATCATAGGAGATGTCCTCCAACAGCTGGCCGTTAAGACC
TTCGGCCAGGCCCCCCCGAG----CGGCGAGTCAGGTCTTTCTACGGGGGCGGACGCCGC
CGACTCTGGCGGTCGGACGCCCCCCGATGAGTCGGCCCTTTCGGAGACGGGTTCCACCTC
CTCCATGCCCCCCCTCGAGGGGGAGCCTGGAGATCCAGATCTGGAGCCTGAGCGGGTAGA
GCTCCAGCCCCCCCCTCAAGGGGGGGAGGTAGCTC-CCGGCTCGGACTCGGGGTCTTGGT
CCACTTGCTCCGAGGAGG---ACGACTCCGTCGTGTGCTGCTCCATGTCATACTCCTGGA
CCGGGGCTCTAATAACTCCTTGTAGCCCTGAAGAGGAAAAGTTGCCAATTAACCCCTTGA
GCAACTCGCTGTTGCGATATCACAACAAGGTGTACTGCACTACATCAAAGAGCGCCTCAC
AGAGAGCTAAAAAGGTAACTTTTGATAGGATGCAAGTGCTCGACGCTCACTATGACTCAG
TCTTAAAGGACATCAAGCTGGCGGCCTCCAAGGTCAGTGCAAGGCTCCTCACTTTGGAGG
AGGCTTGCCAGTTAACTCCACCCCACTCTGCAAGATCCAAGTATGGGTTTGGAGCCAAGG
AGGTCCGCAGCTTGTCCGGGAGGGCCGCTAACCACGCCAAGTCCGTGTGGAAGGACCTCC
TGGAAGACTCACAAACACCAATTCCTACAACCATCATGGCCAAAAATAAGGTGTTCTGCA
TAGACCCCACCAAGGGGGGCAAAAAGCCAGCTCGCCTTATCGTTTACCCTGACCTCGGCG
TCAGGGTTTGCGAGAAGATGGCCCTTTATGATGTCACACAAAAACTTCCTCAGGCAGTGA
TGGGGCCTTCTTATGGATTCCAGTACTCCCCCGCCCAGCGGGTGGAGTTCCTCTTAAAGG
CATGGGCTGAAAAGAAAGACCCTATGGGTTTTTCGTATGATACCCGATGCTTTGACTCAA
CCGTCACTGAGAGAGACACTAGAACTGAGGAGCCCATATACCAGGCCTGCTCTCTGCCCG
AGGAGGCCCGCACTGCCATACACTCGCTAACTGAGAGACTTTACGTAGGAGGGCCCATGT
TTAACAGCAAGGGCCAGGCCTGCGGATACAGGCGTTGCCGCGCTAGCGGGGTGCTCACCA
CTAGCATGGGGAACACTATCACATGCTACGTAAAAGCCCTAGCGGCACGCAAGGCTGCAG
GGATAGTTGCGCCCACAATGCTGGTATGCGGCGACGACTTGGTTGTCATCTCGGAAAGCC
AGGGGGCTGAGGAGGATGGGCGGAACCTGAGAGTCTTCACGGAGGCTATGACCAGGTATT
CCGCCCCTCCGGGTGACCCCCCCAGACCGGAATATGACCTGGAGCTGATAACATCTTGTT
CCTCAAATGTGTCTGTAGCGCTGGGCCCACAGGGCCGCCGCAGATACTATCTGACCAGAG
ACCCTACCACTCCAATTGCCCGGGCTGCCTGGGAAACAGTTAGACACTCCCCAGTCAATT
CATGGCTGGGAAACATCATCCAGTACGCCCCAACCATATGGGTTCGCATGGTCCTGATGA
CACACTTCTATTCCATCCTTATGGCCCAAGACACCCTGGACCAGAGCCTTAACTTTGAGA
TGTACGGAGCGGTGTACTCAGTGAGTCCTTTGGACCTCCCAGCCATAATTGAAAGGCTAC
ACGGGCTTGACGCCTTTTCTCTGCACACATACACTCCCCACGAACTGACGCGGGTGGCTG
CAGCTCTCAGAAAACTTGGGGCACCACCCCTCAGAGCGTGGAAGAGTCGGGCGCGCGCAG
TTAGGGCGTCC--------CTCATCTCCCGTGGAGGGAGAGCGGCCGTTTGTGGTCGGTA
TCTCTTCAACTGGGCGGTGAAGACCAAGCTCAAACTCACTCCATTGCCGGAGGCACAGCC
GCCTGGATTTATCCAGTTGGTTCACCGTCGGCGCTGGCGGGGGCGACATTT-ATCACAGC
GTG-TCGCGTGCCCGACCCCGCTTATTACTCCT-TAGCCTACCCCTACTTTGTGTAGGGG
TAGGCATCTTTCTACTCCCCGCTCGGTAGAGCGGCACACATTAGCT--ACACTCCATAGC
TA---A-------------------------------------------TTTCCTTATTG
TTTTTTTTTTTTTTTTTTATCTTTCCATTT---------------------------CCT
TCCTTCTTACTTCACTTTACCTTCTTT-CTGGTGGCTCCATCTTAGCCCTAGTCACG-GC
TAGCTGTGAAAGGTCCGTGAGC-CGCATGACT-GCAGAGAGTGCCGTAACTGGTCTCTCT
GCAGATCATGT--
> 9:1-9693 + hcv-half1.fasta
-ACCCG-CCCCTAATAGGGGCGACACTCCGCCATGAATCACTCCCCTGTGAGGAACTACT
GTCTTCACGCAGAAAGCGTCTAGCCATGGCGTTAGTATGAGTGTCGTACAGCCTCCAGGC
CCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCG
GGAAGACTGGGTCCTTTCTTGGATAAA-CCCACTCTATGCCCGGCCATTTGGGCGTGCCC
CCGCAAGACTGCTAGCCGAGTAGCGTTGGGTTGCGAAAGGCCTTGTGGTACTGCCTGATA
GGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCATCATGAGCACAAATCCTAA
ACCTCAAAGAAAAACCAAAAGAAACACCAACCGTCGCCCACAAGACGTTAAGTTTCCGGG
CGGCGGCCGGATCGTTGGCGGAGTATACTTGTTGCCGCGCAGGGGCCCCAGGTTGGGTGT
GCGCGCGACAAGGAAGACTTCGGAGCGGTCCCAGCCACGTGGGAGGCGTCAGCCCATCCC
TAAAGATCGGCGCTCCACTGGCAAGTCCTGGGGAAAACCAGGATACCCCTGGCCCCTATA
TGGGAATGAGGGGCTCGGCTGGGCAGGATGGCTCCTGTCCCCCCGAGGTTCCCGTCCCTC
TTGGGGCCCTACTGACCCCCGGCATAGGTCGCGCAATGTGGGTAAGGTCATCGATACCAT
AACATGCGGCTTTGCCGACCTCATGGGGTACATCCCCGTCGTAGGCGCCCCGCTTGGTGG
CGTTGCCAGAGCTCTCGCGCACGGCGTGAGAGTCCTGGAGGACGGGGTCAATTTTGCAAC
AGGGAACTTACCTGGTTGCTCCTTTTCTATTTTCTTGCTAGCCCTACTGTCCTGCATCAC
CATTCCGGTCTCTGCTGTCGAAGTGAGGAACATCAGCGACAGCTACATGGTGACTAATGA
CTGTTCCAATAACAGCATCACCT----GGCAGCTTGAGGCTGCAGTCCTCCACGTCCCCG
GGTGCGTCCCGTGCGAGAAAGTGGGCAACACATCACGGTGCTGGATACCGGTCTCACCAA
ACGTGGCTGTCCGGCAGCCCGGCGCCCTCACGCAGGGCTTGCGGGCGCACATCGACATGG
TTGTGATGTCCGCCACGCTTTGCTCCGCTCTCCACGTGGGGGACCTCTGCGGCGGGGTGA
TGCTCGCAGCCCAGACGTTCATTGTCTCGCCGCAGCACCACTGGTTTGTGCAGGAGTGCA
ATTGCTCCATTTACCCTGGCACCATCACTGGACATCGTATGGCATGGGACATGATGATGA
ACTGGTCGCCCACGGCCACCATGATCCTGGCGTACGCTATGCGCGTTCCCGAGGTCATCA
TAGACATTATTAGCGGGGCTCACTGGGGTGTCATGTTCGGCCTGGCCTACTTCTCTATGC
AGGGAGCGTGGGCAAAGGTCGTCGTCATCCTTCTGCTTGCCGCTGGGGTGGACGCGGG--
-CACCCATACAACTGGGGCTGTTGCCGCGAGCAACGCTAGAGGCCTCGCCAGTTTGTTCA
CTTCTGGACCTAAGCAGAACATTCAGCTCATTAACACCAATGGCAGTTGGCACATTAACC
GCACTGCCCTGAATTGCAATGACTCCCTGCAAACTGGCTTCATCTCGGCCCTGATCTACA
GGAACCGCTTCAACTCGTCAGGATGTCCCGAACGCCTGTCCGTGTGCCGCAATATCGAGG
CCTTCCGGATAGGATGGGGCGCCTTGCAATACGAGGATAATGTCACTAATCCAGAAGATA
TGAGACCATATTGCTGGCACTATCCACCAAACCAGTGTGGCATTGTCCCGGCGCAGTCAG
TGTGTGGCCCAGTGTACTGTTTCACCCCCAGCCCAGTGGTAGTGGGCACAACCGACAGAC
GCGGAGCGCCTACTTACACGTGGGGAGAGAATGATACAAATGTCTTCCTATTGAACAGCA
CTCGACCACCGCTGGGGTCATGGTTCGGATGCACGTGGATGAACTCCACTGGTTTCACCA
AAACTTGTGGCGCACCACCTTGCCGCATTAGAGCTGACTTCAATACCAGCACGGACCTGT
TATGCCCCACGGATTGTTTTAGGAAGCATCCTGATGCCACTTACATCAAATGTGGTTCTG
GGCCTTGGCTCACGCCAAAGTGCCTGGTCGACTACCCCTACAGGCTCTGGCATTACCCCT
GCACAGTTAACTATACCATCTTCAAGGTAAGGATGTACGTGGGGGGGGTTGAGCACAGGC
TCACGGCTGCGTGCAACTTCACTCGCGGGGATCGTTGCAACTTGGAGGACAGGGACAGAA
GTCAACAGTCTCCTTTGTTGCACTCCACCACGGAATGGGCCGTTTTGCCCTGCTCTTTCT
CAGATCTGCCCGCTCTGTCGACTGGCCTTCTTCACCTCCACCAAAATATCGTGGACGTAC
AATACATGTATGGCCT---GTCACCTGCCCTTACAAAATATGTCGTTCGATGGGAGTGGG
TGGTACTCTTATTCCTGCTCCTAGCGGACGCCAGGGTCTGCGCCTGTGTGTGGATGCTCA
TCTTGTTGGGCCAAGCTGAAGCAGCACTAGAGAAGCTGGTCGTCTTGCACGCTGCG----
--AGCGCAGCTAGTTGCAATAGCTTCCTGTATTTTGTCATCTTTTTCGTGGCTGCTTGGT
ACATCAAGGGTCGGGCAGTCCCCCTGGCTGCCTATTCCCTCACTGGCCTATGGCCCTTCT
GCCTACTGCTTCTAGCACTGCCCCAACAGGCTTACGCCTATGACGCATCTGTGCACGGAC
AGAT-------AGGCGCGGCTTTGTTGATACTGATTACCCTCTTTACACTTACCCCGGGG
TATAAAACCCTCCTCAGCCGGAGTCTGTGGTGGCTGTGCTATCTCCTGACCCTGGGGGAG
GCCATGGTTCAGGAGTGGGCACCACCCATGCAGGCGCGTGGTGGCCGTGATGGCATCATA
TGGGCCGCCACCATACTCTGCCCGGGCGTAGTGTTTGATATAACCAAGTGGCTGTTGGCG
GTGCTTGGGCCCGCTTAC----CTCCTGAGAGATGCTTTGACGAGCGTGCCGTACTTCGT
CAGAGCTCACGCTCTGCTGAGAATGTGCACTATGGTGAAGCACCTCGCGGGGGGTAGGTA
CGTCCAGATGGCGCTATTAGCCCTTGGTAGATGGTCCGGCACTTACATCTATGACCACCT
CACCCCTATGTCGGATTGGGCTGCTAGCGGCCTGCGGGACTTGGCGGTCGCTGTGGAGCC
TATCATCTTCAGTCCGATGGAGAAGAAAGTCATCGTCTGGGGAGCAGAGACGGCTGCATG
CGGGGACATCTTATACGGACTTCCTGTGTCCGCCCGACTCGGTCGGGAGATCCTCCTTGG
CCCAACTGATGGCTACACCTCCAAGGGGTGGAGGCTTCTCGCCCCCATCACTGCCTACGC
CCAGCAGACACGAGGTCTCTTGGGCGCCATAGTAGTGAGCATGACGGGGCGAGACAAGAC
AGAGCAGGCC---GGGGAAATCCAAGTCTTGTCCACAGTCAGTCAGTCCTTCCTCGGAAC
ATCCATTTCGGGGGTCTTGTGGACTGTTTACCACGGAACTGGCAATAAGACCCTAGCCGG
CTCACGGGGCCCGGTCACACAGATGTATTCAAGTGCCGAAGGGGACTTGGTAGGGTGGCC
CAGTCCTCCCGGGACCAAATCTTTGGAGCCGTGCACGTGTGGAGCGGTCGACCTATACCT
GGTCACGCGGAACGCTGATGTCATCCCGGCTCGAAGACGCGGGGACAAGCGGGGAGCGCT
ACTCTCCCCGAGGCCTCTTTCGACCCTGAAGGGATCATCGGGGGGACCGGTGCTCTGCCC
TAGGGGCCACGCTGTCGGGATCTTCCGGGCAGCTGTGTGCTCTCGGGGCGTGGCTAAGTC
CATAGATTTCATCCCCGTTGAGGCGCTCGACATCGTCACGCGGTCTCCCACCTTTAGCGA
CAACAGCACACCACCAGCTGTGCCCCAGACCTATCAGGTCGGGTACTTGCATGCCCCAAC
TGGCAGTGGAAAGAGCACCAAAGTCCCTGTCGCATATGCCGCCCAGGGGTACAAGGTATT
AGTGCTTAACCCCTCGGTGGCTGCCACTCTGGGGTTTGGGGCGTACCTGTCCAAGGCACA
TGGCATCAATCCCAACATCAGGACTGGAGTCAGAACTGTGACGACCGGGGGGCCCATCAC
GTACTCCACGTATGGTAAATTCCTCGCTGATGGGGGCTGCTCAGGCGGCGCCTATGACAT
CATCATATGCGATGAATGCCACGCTGTGGACGCTACCACCATTCTCGGCATCGGAACGGT
TCTTGACCAAGCTGAGACAGCCGGGGTCAGGCTCACTGTACTGGCCACGGCCACGCCCCC
CGGGTCGGTGACAACTCCCCATCCCAACATAGAGGAGATAGCCCTCGGGCAGGAGGGTGA
GATCCCCTTCTATGGGAGGGCGATTCCCCTGTCTCACATCAAGGGAGGGAGACACTTAAT
CTTCTGCCACTCAAAAAAAAAGTGTGACGAGCTCGCGGCGGCCCTTCGGGGCATGGGCTT
GAACGCTGTGGCATACTACAGAGGGTTGGACGTCTCCATAATACCAACTCAAGGAGATGT
AGTGGTCGTCGCCACCGACGCTCTCATGACGGGGTTCGCTGGAGACTTTGACTCTGTGAT
CGACTGCAACGTAGCGGTCACTCAAGTCGTGGACTTCAGCCTGGACCCCAC---------
------------------------------------------------------------
----------------------------CTTCACTATAACTACACAGACTGTCCCTCAAG
ACGCTGTCTCACGTAGCCAGCGCCGGGGGCGTACAGGTAGAGGAAGACTGGGCACTTACA
GGTACGTTTCCACTGGAGAGCGAGCCTCAGGAATGTTTGACAGTGTAGTGCT--------
-----------------------------CTGTGAGTGCTACGACGCAGGGGCTGCATGG
TATGAGCTTACGCCAGTGGAGACTACCGTCAGGCTTGGAGCGTATTTCAATACGCCTGGC
TTGCCTGTGTGCCAAGACCACCTTGAGTTTTGGGAGGCAGTTTTCACCGGCCTCACACAC
ATAGATGCCCACTTCCTTTCCCAGACAAAACAATCGGGGGAGAATTTCGCGTACTTAGTA
GCCTATCAGGCCACAGTGTGCGCTAGAGCCAAAGCCCCCCCCCCGTCTTGGGACGTCATG
TGGAAATGCTTGACTCGACTCAAGCCCACGCTCGTGGGCCCTACACCTCTCCTGTACCGT
TTGGGCTCTGTTACCAATGAGGTCACCCTTACACATCCTGTGACAAAATACATCGCCACA
TGCATGCAAGCTGACCTTGAGGTCATGACCAGCACGTGGGTCCTGGCTGGGGGAGTCTTG
GCAGCCGTCGCCGCGTATTGGTTGGCGACCGGGTGTGTTTCCATCATCGGCCGGTTGCAC
ATCAACCAGCGAGCT-GTCGTTGCTCCGGACAAGGAGGTCCTCTATGAGGCTTTTGATGA
GATGGAAGAATGTGCCTCTAGAGCGGCTCTCATTGAGGAGGGGCAGCGGATGGCCGAGAT
GTTGAAGTCTAAGATCCAAGGCTTATTGCAGCAAGCCTCTAAACAGGCCCAGGACATACA
ACCTGCTGTGCAGGCCTCGTGGCCCAAGGTGGAGCAGTTCTGGGCCAAACACATGTGGAA
TTTCATTAGCGGCATTCAATACCTCGCAGGACTGTCAACACTGCCAGGGAACCCTGCTGT
GGCTTCCATGATGGCATTCAGTGCCGCTCTCACCAGTCCGTT-GTCAACTAGCACCACTA
TCCTTCTCAACATCTTGGGAGGCTGGCTGGCGTCCCAAATTGCGCCGCCCGCGGGGGCCA
CCGGCTTCGTCGTCAGTGGCCTGGTGGGGGCTGCCGTAGGCAGCGTAGGCCTGGGTAAGG
TGCTGGTGGACATCTTGGCAGGGTATGGTACGGGCATTTCGGGGGCCCTCGTCGCATTCA
AGATCATGTCTGGCGAAAAGCCCTCCATGGAGGATGTCGTCAACCTGCTGCCTGGGATTC
TGTCTCCGGGTGCCCTAGTAGTGGGAGTCATCTGCGCGGCCATTCTGCGTCGCCACGTGG
GACCGGGGGAAGGCGCGGTCCAATGGATGAACAGGCTCATTGCCTTCGCTTCCATAGGAA
ACCACGTCGCCCCTACCCATTACGTGACGGAGTCGGATGCGTCGCAGCGTGTGACCCAAC
TGCTTGGCTCCCTTACTATAACTAGTCTACTCAGAAGACTCCACAATTGGATCACTGAGG
ACTGCCCCATCCCATGCGCCGGCTCATGGCTCAGCGATATGTGGGACTGGGTTTGCACTA
TCCTAACAGACTTTAAGAACTGGCTGACCTCCAAATTGTTCCCAAAAATGCCCGGCCTCC
CCTTTATCTCTTGCCAAAAGGGGTACAAGGGTGTGTGGGCCGGCACTGGTATCATGACCA
CACGGTGCCCTTGCGGCGCCAGCATCTCTGGCAATGTTCGCCTGGGCTCCATGAGAATCA
CAGGGCCTAAAACCTGTATGAACATCTGGCAGGGGACCTTCCCCATTAATTGTTACACGG
AGGGCCAGTGCATGCCGAAACCCGCGCCGAAC--TTCAAAACCGCCATCTGGAGGGTGGC
GGCCTCCGAGTACGCGGAGGTGACGCAGCACGGGCCATACTCCTACATAACAGGACTGAC
CACTGACAATTTGAAAGTCCCCTGCCAACTACCTTCTCCAGAGTTTTTCTCCTGGGTGGA
CGGAGTGCAAATCCATAGGTTCGCTCCTACGCCGAAGCCGTTTTTCCGGGATGAGGTCTC
GTTTTGCGTTGGGCTCAACTCATTTGTCGTCGGGTCTCAGCTTCCCTGCGACCCTGAGCC
CGACACTGACGTCTTGATGTCCATGCTAACAGATCCATCCCATATCACGGCGGAGGCCGC
AGCACGGCGCTTAGCGCGGGGGTCA------CCCCCATCTGAGGCAAGCTCCTCAGCCAG
CCAGCTATCGGCACCATCGCTGCGAGCCACCTGCACCACCCATGGCAAGACCTATGATAT
GGACATGGTGGAAGCTAACCTGTT------------CATGGGGGGCGATGTGACTCGGAT
AGAGTCTGAGTCCAAAGTGGTCGTTCTGGATTCTCTCGACTCGATGGTCGAAGAAAGGAG
CGACCTTGAGCCTTCGATACCATCGGAGTATATGCTCCCCAAGACCAAGTTCCCGCCAGC
CCTACCGGCCT--------------------------------------GGGCACGGCCT
GATTACAACCCGCCACTTGTGGAATCATGGAAGAGGCCCGATTATCAACCGCCGACGGTT
GCGGGCTGTGCTCTCCCTCCTCCCAAGAAGACCCCGACGCCCCCACCAAGGAAGCGTCGG
ACAGTGGGTCTGAGCGAGAGCACCATAGGAGACGCCCTCCAACAGCTGGCTATCAAGACC
TTCGGCCAGCCTCCCCCAAG----CGGCGATTCAGGCCTTTCCACGGGGGCGGACGCCGC
CGACTCCGGCGGTCGGACGCCCCCAGATGAATCGGCCCTTTCGGAGACAGGTTCTATCTC
CTCCATGCCCCCCCTTGAGGGGGAGCCTGGGGACCCAGACCTGGAACCTGAGCAGGTAGA
GCTTCAACCTCCCTCCCAGGGGAGGGAGGTAGCTC-CCGGCTCGGACTCAGGGTCCTGGT
CTACTTGCTCCGAGGAGG---ATGATTCCGTCGTGTGCTGCCCCATGTCATACTCCTGGA
CCGGGGCTCTAATAACTCCTTGCAGCCCCGAAGAGGAGAAGTTACCAATTAACCCCTTGA
GCAACTCGCTGTTGCGATACCACAACAAGGTGTACTGTACTACATCAAAGAGCGCCTCAC
TGAGGGCTAAAAAGGTAACTTTTGATAGGATGCAGGTGCTCGACGCCTATTATGACTCAG
TCTTAAAGGACATCAAGCTAGCGGCCTCGAAGGTTAGCGCAAGGCTCCTCACTTTGGAGG
AGGCGTGCCAATTGACTCCACCCCATTCTGCAAGATCCAAATATGGGTTTGGGGCAAAGG
AGGTTCGCAGCTTGTCCGGGAGGGCCGTCAACCACATCAAGTCCGTGTGGAAGGACCTCC
TGGAAGACTCACAAACACCAATTCCTACGACCATCATGGCCAAAAATGAGGTGTTCTGCG
TGGACCCCACTAAGGGGGGCAAGAAAGCAGCTCGCCTTATCGTTTACCCCGACCTCGGCG
TCAGGGTCTGCGAGAAGATGGCCCTTTATGATGTCACACAAAAGCTTCCTCAGGCGGTGA
TGGGGGCTTCTTATGGCTTCCAGTACTCCCCCGCTCAACGGGTGGAGTTTCTCTTGAAGG
CATGGGCGGATAAGAGAGAACCCATGGGTTTCTCGTATGATACCCGATGCTTTGACTCAA
CTGTCACCGAGAGAGACATTAGAACTGAGGAGTCGATATACCAGGCCTGCTCCCTGCCCG
AGGAGGCTCACACTGCCATACACTCGCTGACTGAGAGACTCTACGTGGGAGGGCCCATGC
TCAACAGCAAGGGCCAGGCCTGCGGGTACAGGCGTTGCCGCGCCAGCGGGGTGCTTACCA
CTAGCATGGGGAATACCATCACATGCTATGTGAAAGCCCTAGCGGCTTGCAAAGCTGCGG
GGATAGTTGCACCTACAATGCTGGTATGCGGCGATGACTTGGTTGTCATCTCAGAAAGCC
AGGGGACTGAGGAGGACGAGCGGAACCTGAGAGCTTTCACGGAGGCTATGACCAGGTATT
CTGCCCCTCCTGGTGATCCCCCCAGACCGGAATATGACTTGGAGCTGATAACATCTTGTT
CCTCAAATGTGTCTGTGGCACTCGGCCCACAGGGCCGCCGCAGATACTACCTGACCAGAG
ATCCTACCACTCCAATCGCCCGGGCTGCCTGGGAAACAGTCAGACACTCCCCTGTCAATT
CATGGCTGGGAAACATCATCCAGTACGCCCCAACCATATGGGTTCGGATGGTCCTGATGA
CACACTTCTTCTCCATTCTTATGGCCCAAGACACCCTGGACCAGAACCTCAACTTTGAAA
TGTACGGATCGGTGTACTCCGTGAGTCCTTTGGACCTCCCAGCCATAATTGAAAGGTTAC
ACGGGCTTGACGCCTTCTCTCTGCACACATACTCTCCCCACGAACTGACGCGGGTGGCTT
CGGCCCTCAGAAAACTTGGGGCGCCACCACTCAGAGCGTGGAAGAGTCGGGCGCGTGCAG
TTAGGGCGTCC--------CTCATCTCCCGAGGGGGGAGAGCGGCCATTTGTGGCCGGTA
TCTCTTCAACTGGGCGGTGAAGACTAAGCTCAAACTCACTCCATTGCCGGAGGACACGCC
TTCTGGATCTATCCAGTTGGTTTACCGTCGGCGCCGGCGGGGGCGACATTT-ATCACAGC
GTG-TCGCGCGCCCGACCCCGCTTATTACTCCT-TAGCCTACTCCTACTTTTCGTAGGGG
TAGGCCTCCTTCTACTCCCCGCTCGGTAGAGCGGCACACATTAGCT--ACACTCCATAGC
TA---ACTGTTTTT------------------------TTTTTTTTTTTTTTTTTTATTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTCCTT
TCTTTCTTACCTTACTTTACATTCTTTTCTGGTGGCTCCATCTTAGCCCTAGTCACG-GC
TAGCTGTGAAAGGTCCGTGAGC-CGCATGACT-GCAGAGAGTGCCGTAACTGGTCTCTCT
GCAGATCATGT--
> 1:1-9685 + hcv-half2.fasta
--ACCCGCCCCTAATAGGGGCGACACTCCGCCATGAATCACTCCCCTGCGAGGAACTACT
GTCTTCACGCAGAAAGCGTCTAACCATGGCGTTAGTATGAGTGTCGTACAGCCTCCAGGC
CCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCG
GGAAGACTGGGTCCTTTCTTGGATAAA-CCCACTCTATGCCCGGTCATTTGGGCGTGCCC
CCGCAAGACTGCTAGCCGAGTAGCGTTGGGTTGCGAAAGGCCTTGTGGTACTGCCTGATA
GGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCACCATGAGCACAAATCCTAA
ACCTCAAAGAAAAACCAAAAGAAACACTAACCGTCGCCCACAAGACGTTAAGTTTCCGGG
CGGCGGCCAGATCGTTGGCGGAGTATACTTGTTGCCGCGCAGGGGCCCCAGATTGGGTGT
GCGCGCGACAAGGAAGACTTCGGAGCGGTCCCAGCCACGTGGGAGGCGCCAGCCCATCCC
TAAAGATCGGCGCTCCACTGGCAAGTCCTGGGGAAAGCCAGGATACCCTTGGCCCCTATA
TGGGAACGAGGGACTCGGCTGGGCAGGATGGCTCCTGTCCCCCCGAGGTTCCCGTCCCTC
TTGGGGCCCCACTGACCCCCGGCATAGGTCGCGCAACGTGGGTAAGGTCATCGATACCCT
AACGTGCGGCTTTGCCGACCTCATGGGGTACATCCCCGTCGTAGGCGCCCCACTTGGTGG
CGTTGCCAGAGCTCTCGCGCACGGCGTGAGAGTCCTGGAGGACGGGGTTAATTATGCAAC
AGGGAACCTACCTGGTTGCTCCTTTTCTATCTTCTTGCTGGCCTTGTTGTCCTGCATCAC
CACCCCGGTCTCTGCTGCCCAAGTGAAGAACACTAGTGACATCTACATGGTGACTAATGA
CTGTTCTAATGACAGCATCACCT----GGCAGCTTCAGGCCGCGGCCCTCCACGTCCCCG
GGTGTGTCCCGTGTGAGAGGGTGGGAAACACATCACGGTGCTGGATACCGGTCTCACCGA
ACGTGGCTGTGCGGCAGCCTGGCGCCCTCACGCAGGGCTTGCGGACGCACATCGACATGG
TCGTGATGTCCGCCACGCTCTGCTCCGCTCTCTACGTGGGGGATCTCTGCGGCGGGGTGA
TGCTCGCAGCTCAGATGTTCATTATCTCGCCGCAGCACCACTGGTTTGTGCAGGAATGCA
ATTGCTCCATCTACCCTGGTACCATCACTGGGCACCGTATGGCATGGGACATGATGATGA
ATTGGTCGCCCACAACCACCATGATCCTGGCGTACGTGATGCGCGTGCCCGAGGTCATCA
TCGACATCATCGGCGGGGCTCACTGGGGCGTCATGTTCGGCCTAGCCTACTTCTCTATGC
AGGGAGCGTGGGCGAAGGTTGTTGTCATCCTCCTGCTGGCCGCTGGGGTGGACGCGCA--
-CACCAG---AACTGGGAGTTCTGTCGGGTACGCCACCTCCGGCATCGTCGGCCTCTTCA
CCTCTGGTCCTAAGCAGAACATTCAGCTCATTAACACCAATGGCAGTTGGCACATCAACC
GCACTGCCTTGAACTGCAATGACTCCTTGAACACCGGCTTTATCGTGTCCCTGTTCTACG
CCCGCAACTTCAACTCGACAGGATGTCCTGAACGCCTGTCCGCCTGCCGCGGTATCGAGG
GCTTCCGGATAGGATGGGGCACCTTGCAATACGAGGATAATGTCACCAATCCAGAAGATA
TGAGACCATATTGCTGGCACTACCCACCAAAACAATGTGGCATAGTCCCTGCGGGGTCTG
TGTGCGGCCCAGTGTACTGTTTCACCCCCAGCCCAGTAGTGGTGGGCACGACCGATAGAC
TTGGAGTGCCTACTTACACGTGGGGAGAGAATGAGACAGATGTCTTCCTATTGAACAGCA
CCCGACCACCGGTGGGGTCATGGTTTGGCTGCACGTGGATGAACTCCACTGGTTTCACCA
AGACTTGTGGCGCACCACCTTGCCGCATTAGGGCTGACTTCAATGCCAGCACGGACCTGT
TGTGCCCCACGGACTGTTTTAGGAAGCATCCTGAAGCTACTTACATCAAATGTGGTTCTG
GGCCCTGGCTCACGCCGAGGTGCCTGGTCGACTACCCCTATAGGCTCTGGCATTACCCCT
GCACAGTCAACTATTCCATCTTCAAGATAAGAATGTATGTGGGGGGGGTTGAGCACAGGC
TCACAGCCGCGTGTAACTTCACTCGTGGGGATCGTTGCAACCTGGAGGACAGAGATAGAA
GTCAACTGACTCCTTTGTTGCACTCCACCACGGAGTGGGCCATTTTGCCCTGTACCTACT
CAGACTTGCCCGCCTTGTCGACTGGTCTTCTCCACCTCCACCAAAATATCGTGGACGTGC
AATACATGTATGGCCT---GTCACCTGCCCTCACAAAATATGTCGTTCGATGGGAGTGGG
TAGTACTCTTATTCCTGCTCCTAGCGGACGCCAGGGTCTGCGCCTGCGTGTGGATGCTCA
TCTTGCTGGGCCAAGCCGAAGCAGCACTAGAGAAGTTGGTCGTCTTGCATGCTGCGAGCA
CA--GCTAGCTGCA----ATGGCTTCCTGTATTTTGTCATCTTTTTCGTAGCTGCTTGGT
ACATTAAGGGTCGGGCAGTCCCCTTGGCTACCTATTCCCTCACTGGCCTATGGCCCTTCT
GTCTACTGCTCCTAGCACTGCCCCAACAGGCTTATGCCTATGATGCATCCGTGCACGG--
-----ACAGGTAGGCGTGGTTTTGTTGATACTGATTACCCTCTTTACACTCACCCCGGGG
TACAAGACCCTTCTCAGCCGGTGTCTGTGGTGGTTGTGCTATATCCTGACCCTGGGGGAG
GCCATGGTCCAGGAGTGGGCGCCATCCATGCAGGCGCGCGGCGGCCGTGATGGCATCATA
TGGGCCGCCACCATATTCTGCCCGGGTATAGTGTTTGACATAACCAAGTGGCTCTTAGCG
GTGCTTGGGCCTGCTTAC----CTCCTAAGAGATGCTTTGACACGCGTGCCATACTTTGT
CAGAGCTCACGCTCTGCTGAGGATGTGCACCATGGTGAGGCACCTCGCGGGGGGTAGGTA
CGTCCAGATGGCGCTATTGGCCCTTGGTAGATGGACTGGCACTTACATCTATGACCACCT
CACCCCCATGTCGGATTGGGCTGCTAGCGGCCTGCGGGACCTGGCGGTCGCCGTAGAGCC
TATCATCTTCAGTCCGATGGAGAAGAAAGTCATCGTCTGGGGGGCGGAGACGGCTGCATG
CGGGGACATCCTACACGGACTCCCCGTGTCCGCCCGGCTCGGTCGGGAGATCCTCCTTGG
CCCAGCTGATGGCTACACCTCCAAAGGGTGGAGGCTTCTCGCCCCCATCACCGCTTACGC
TCAGCAGACACGAGGCCTCCTGGGCACCATAGTGGTGAGCATGACGGGGCGCGACAAGAC
AGAACAGGCC---GGGGAAATCCAAGTCCTGTCCACAGTCACTCAGTCCTTCCTCGGGAC
ATCCATTGCGGGGGTCTTATGGACTGTTTACCACGGAGCCGGCAACAAGACTCTAGCCGG
CTCACGGGGCCCAGTCACGCAAATGTATTCAAGTGCCGAGGGGGATTTGGTGGGATGGCC
CAGCCCTCCTGGGACCAAGTCTTTGGAGCCGTGTACGTGTGGATCGGTCGACCTGTACCT
GGTCACGCGAAACGCTGATGTCATCCCGGTTCGAAGACGCGGGGACAAGCGGGGAGCGTT
ACTCTCCCCGAGACCCCTTTCGACCTTGAAGGGGTCTTCGGGGGGACCGGTGCTTTGCCC
TAGGGGCCACGCTGTCGGGATCTTCCGGGCAGCTGTGTGCTCTCGGGGCGTGGCTAAGTC
CATAGATTTCATCCCCGTTGAGACACTCGACATCGTCACACGGTCTCCCACCTTTAGTGA
CAACAGCACACCACCAGCTGTGCCCCAGACCTATCAGGTCGGATACTTGCATGCCCCAAC
TGGCAGTGGGAAGAGTACCAAAGTCCCCGTCGCATACGCCGCCCAGGGGTATAAAGTACT
AGTGCTTAACCCCTCGGTGGCTGCCACCTTGGGGTTTGGGGCGTACTTGTCCAAGGCACA
TGGCATCAATCCCAACATTAGGACTGGAGTCAGAACTGTGACGACCGGAGAGGCCATCAC
GTACTCCACGTATGGCAAATTCCTCGCTGATGGGGGCTGCTCAGGCGGCGCCTATGACAT
CATCATATGCGATGAATGCCATGCTACGGATTCTACCACCATCCTCGGCATCGGAACAGT
TCTTGACCAAGCAGAAACAGCCGGGGTCAGGCTAACTGTACTGGCCACGGCCACGCCTCC
TGGGTCGGTGACAACCCCCCATCCCAATATAGAGGAGGTAGCCCTCGGGCAGGAGGGTGA
GATCCCCTTCTATGGGAAGGCGATCCCCCTGTCTTACATCAAGGGAGGGAGGCACTTGAT
CTTCTGCCATTCAAAGAAAAAGTGTGAAGAGCTCGCGGTGGCCCTCCGGGCCATGGGCTT
GAACGCTGTGGCATACTACAGAGGGTTGGACGTCTCTATAATACCAACTCAAGGGGATGT
AGTGGTCGTCGCCACAGACGCCCTCATGACCGGGTATACTGGAGACTTTGACTCCGTGAT
CGACTGCAACGTAGCGGTCACTCAGGTCATAGACTTCAGCCTGGACCCCAC---------
------------------------------------------------------------
----------------------------CTTCACTATAACTACACAGACTGTCCCTCAAG
ACGCTGTCTCACGTAGCCAGCGCCGAGGCCGCACAGGTAGAGGAAGACTAGGCACTTATA
GGTATGTTTCCACTGGTGAGCGAGCCTCAGGAATGTTTGACAGTGTAGTGCTCTGCGAGT
GCTACGACGCAGGGGCTGCATGGTATGAG-------------------------------
------CTCACACCAGCGGAGACTACCGTCAGGCTTAGAGCGTATTTCAACACGCCTGGC
TTGCCTGTGTGCCAAGACCATCTTGAGTTTTGGGAGGGAGCTTTCACCGACCTCACACAC
ATAGATGCCCACTTCCTTTCCCAAACAAAGCAAGCAGGGGAGAATTTCGCATACTTAGTA
GCCTATCAGGCTACAGTGTGCGCCAGAGCCAAAGCCCCTCCCCCGTCCTGGGACATCATG
TGGAAGTGCTTGACTCGACTCAAGCCCACGCTCGTGGGCCCTACACCCCTCCTGTACCGT
TTGGGCTCTGTTACCAACGAGGTCACCCTCACGCACCCTGTGACAAAATACATTGCCACA
TGCATGCAAGCTGACCTTGAGGTCATGACCAGCACGTGGATCCTTGCCGGGGGAGTCCTG
GCAGCTGTCGCCGCGTACTGCTTGGCAACCGGGTGTGTTTCCATCATTGGCCGTTTGCAC
GTCAACCAGCGAGCT-GTCGTTGCACCGGATAAGGAGGTCCCCTATGAGGCTTTTGATGA
GATGGAGGAGTGTGCCTCTAGAGCGGCTCTCATTGAAGAGGGGCAGCGGATAGCCGAGAT
GCTGAAGTCCAAGATCCAAGGCTTATTACAGCAAGCCTCCAAACAGGCCCAGAACATACA
ACCCGCTGTGCAGACTTCATGGCCCAAGGTGGAACAATTTTGGGCCAAGCACATGTGGAA
CTTCATTAGCGGCATTCAATACCTCGCAGGACTGTCAACACTGCCAGGAAATCCCGCTGT
GGCCTCCATGATGGCATTCAGTGCCGCCCTCACCAGCCCGTT-GTCAACTAGCACCACTA
TCCTTCTTAACATTTTGGGAGGCTGGCTGGCGTCCCAAATTGCGCCACCCGCGGGGGCCA
CTGGCTTTGTCGTCAGTGGTCTGGTGGGGGCTGCCATAGGCAGCATAGGCCTGGGTAAGG
TGCTGGTGGACATCTTGGCAGGGTATGGTGCGGGCATTTCGGGGGCCCTCGTCGCATTCA
AGATCATGTCTGGCGAGAAGCCCTCCATGGAGGATGTCGTCAACCTGTTGCCTGGGATTC
TGTCTCCGGGTGCCCTGGTGGTGGGAGTGATCTGCGCGGCCATTCTGCGCCGCCACGTAG
GACCGGGGGAAGGCGCGGTCCAATGGATGAATAGGCTCATTGCCTTCGCTTCCAGGGGAA
ACCACGTCGCCCCCACCCACTACGTGACGGAGTCGGATGCGTCGCAGCGTGTGACCCAAC
TGCTTGGCTCCCTTACTATAACTAGCCTACTCAGAAGACTCCACAATTGGATTACTGAGG
ACTGCCCCATCCCATGCGCCGGCTCGTGGCTCCGCGATGTGTGGGACTGGGTTTGCAGCA
TCCTAACAGACTTCAAAAACTGGCTGACCTCCAAGTTGTTCCCAAAAATGCCCGGCCTCC
CCTTTATCTCTTGCCAAAAGGGGTACAAGGGCGTGTGGGCCGGCACTGGTATCATGACCA
CACGGTGTCCTTGTGGCGCCGTCATCTCTGGCAATGTCCGCCTGGGCTCTATGAGAATCA
CAGGGCCTAAAACCTGCATGAACACTTGGCAGGGGACCTTCCCTATCAATTGTTACACGG
AGGGCCAGTGCGTGCCAAAACCTGCGCCAAAC--TTCAAGACCGCCATCTGGAGGGTGGC
GGCCTCAGAGTACGCGGAGGTGACACAGCACGGGTCATACTCCTATATAACAGGACTGAC
CACTGACAATTTGAAAGTTCCCTGCCAACTACCTTCTCCAGAGTTCTTCTCCTGGGTGGA
TGGGGTGCAAATCCATAGGTTTGCTCCCACACCAAAGCCGTTCTTCCGGGATGAGGTCTC
GTTTTGCGTTGGGCTCAACTCGTTTGTCGTCGGGTCTCAGCTTCCTTGTGACCCTGAACC
CGACACCGACGTACTGATGTCCATGCTCACAGATCCATCCCACATCACGGCGGAGGCTGC
AGCGCGGCGCTTAGCGCGAGGGTCG------CCCCCATCTGAGGCAAGTTCCTCAGCGAG
CCAGCTATCAGCGGCATCGCTGCGAGCCACCTGCACCACCCACGGCAAGACCTATGATGT
GGACATGGTGGATGCCAGCCTGTT------------TATGAGGGGCGATGTGACTCGGAT
AGAATCTGAGTCCAAAGTGGTAGTTCTGGACTATCTCGACCCAAT--GGTCGAAGAA--A
CGAG----------------CGACCGCGAGCCTTCGA-------------TACCATCGGA
G-----TATATGCTTCCCAGAAACAGGTTCCCACCAGCCTTACCGGCCTGGGCACGGCCT
GATTACAACCCACCGCTTGTGGAGTCGTGGAAGAGGCCAGATTACCAACCGCCCACTGTT
GCGGGCTGTGCTCTCCCCCCCCCCAAGAAGACCCCAACGCCCCCTCCAAGGAGACGCCGG
ACAGTGGGTCTGAGCGAGAGCACCATAGGAGACGCCCTCCAGCAGCTGGCCGTTAAGTCC
TTTGGCCAGCCCCCTCCAAG----CGGAGACTCAGGCCTTTCCACGGGGGCGGACGCCGC
CGACTCCGGCGGTCAGACGTCCCCTGATGAGTTGGCTCTTTCGGAGACAGGTTCCATCTC
CTCCATACCCCCCCTCGAGGGGGAGCCCGGAGATCCAGACCTGGAGCCTGAGCAGGTAGA
GCTCCAACCTCCCCCCCAGGGGGGGGAGGTAGCTC-CCGGCTCGGACTCGGGGTCCTGGT
CCACCTGCTCTGAGGAGG---ATGATGCCGTCGTGTGCTGCTCCATGTCATACTCCTGGA
CCGGGGCTCTAATAACTCCTTGTAGCCCCGAAGAGGAAAAGTTGCCAATTAACCCCTTGA
GCAACTCGCTGTTGCGATACCACAACAAGGTGTACTGTACCACATCAAAGAGCGCCTCAT
TGAGGGCTAAAAAGGTAACTTTTGATAGGATGCAAGTGCTCGACACCTATTATGACTCAG
TCTTAAAGGACATCAAGCTAGCGGCCTCCAAGGTCAGCGCAAGGCTCCTCACCTTGGAGG
AGGCGTGCCAATTGACTCCGCCCCATTCCGCAAGATCCAAGTATGGGTTTGGGGCTAAGG
AGGTCCGCAGCTTGACCAGGAGGGCCGTTAACCACATCAAGTCCGTGTGGGAGGACCTCC
TGGAAGACTCACAAACACCAATTCCTACAACCATCATGGCCAAAAATGAGGTGTTCTGCG
TAGACCCCACCAAGGGGGGCAAGAAAGCAGCTCGCCTTATCGTTTACCCTGACCTCGGCG
TCAGGGTCTGCGAGAAGATGGCCCTTTATGATGTCACACAGAAACTTCCTCAGGCGGTGA
TGGGGGCTTCTTATGGTTTCCAGTACTCCCCCTCTCAGCGGGTGGAGTTTCTCTTGAAGG
CATGGGCGGAAAAGAAAGGCCCTATGGGTTTTTCGTATGATACCCGATGCTTTGACTCAA
CCGTCACCGAGAGAGACATCAAAACTGAGGAGTCCATATACCAGGCCTGCTCCCTGCCCG
AGGAGGCCCGCACTGCCATACACTCGCTGACTGAGAGACTCTACGTGGGAGGGCCCATGT
TCAACAGCAAGGGCCAGTCCTGCGGGTACAGGCGTTGCCGCGCCAGCGGGGTGCTCACCA
CTAGCATGGGGAACACCATCACATGCTATGTAAAAGCCCTAGCGGCTTGCAAGGCTGCAG
GGATAGTAGCGCCCACAATGCTGGTATGCGGCGACGACTTGGTTGTCATCTCAGAAAGCC
AGGGGACTGAGGAGGACGAGCGAAACCTGAGAGCCTTCACGGAGGCTATGACCAGGTATT
CTGCCCCTCCTGGTGACCCCCCCAGACCGGAATATGACCTGGAGCTGATAACATCTTGTT
CCTCAAATGTGTCTGTGGCACTCGGCCCGCAGGGCCGCCGCAGATACTACCTGACCAGAG
ACCCTGCCACTCCAATTGCCCGGGCTGCCAGGGAAACAGTTAGACACTCCCCTGTCAATT
CATGGCTGGGAAACATCATCCAGTACGCTCCAACCATATGGGTTCGCATGGTCCTGATGA
CACACTTCTTCTCCATTCTTATGGCTCAAGACACCCTGGACCAGAACCTCAATTTTGAGA
TGTACGGATCGGTGTACTCCGTGAGTCCTTTGGACCTCCCAGCCATAATTGAAAGGTTAC
ACGGGCTTGGCGCCTTTTCTCTGCACACATACACTCCCCACGAACTGACGCGGGTGGCTT
CAGCCCTCAGAAAACTTGGGGCGCCACCCCTCAGAACGTGGAAGAGTCGGGCGCGTGCAG
TAAGGGCGTCC--------CTCATCTCCCGCGGGGGGAGAGCGGCCGTTTGCGGTCGGTA
TCTCTTCAACTGGGCGGTGAGGACCAAGCTCAAACTCACTCCATTGCCGGAGGCACAGCC
TCCTGGATTTATCCAGTTGGTTTACCGTCGGCGCCGGCGGGGGCGACATTT-ATCACAGC
GTG-TCGCGTGCCCGACCCCGCTTATTACTCCT-TAGCCTACTCCTACTTTTCGTAGGGG
TAGGCCTCTTTTTACTCCCCGCTCGGTAGAGCGGCACACATTAGCTA--CACTCCATAGC
TA---ACTGTTCCT------------TTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTT-----------------CCT
TCCTTTCTCACCTTCTTTTACTTCTTTCCTGGTGGCTCCATCTTAGCCCTAGTCACG-GC
TAGCTGTGAAAGGTCCGTGAGC-CGCATGACT-GCAGAGAGTGCCGTAACTGGTCTCTCT
GCAGATCATGT--
> 2:1-9427 + hcv-half2.fasta
--------------------------------ATAGATCACTCCCCTGTGAGGAACTACT
GTCTTCACGCAGAAAGCGTCTAGCCATGGCGTTAGTATGAGTGTCGTGCAGCCTCCAGGT
CCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCA
GGACGACCGGGTCCTTTCTTGGATCAA-CCCGCTCAATGCCTGGAGATTTGGGCGTGCCC
CCGCGAGACTGCTAGCCGAGTAGTGTTGGGTCGCGAAAGGCCTTGTGGTACTGCCTGATA
GGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCACCATGAGCACAAATCCTAA
ACCTCAAAGAAAAACCAAACGTAACACCAACCGCCGCCCACAGGACGTCAAGTTCCCGGG
CGGTGGTCAGATCGTTGGTGGAGTTTACCTGTTGCCGCGCAGGGGCCCCAGGTTGGGTGT
GCGCGCGACCAGGAAGACTTCCGAGCGGTCGCAACCTCGTGGAAGGCGACAACCTATCCC
CAAGGCTCGCCAACCCGAGGGCAGGGCCTGGGCTCAGCCCGGGTACCCTTGGCCCCTCTA
TGGCAATGAGGGTCTGGGGTGGGCAGGATGGCTCCTGTCACCCCGTGGTTCTCGGCCTAG
TTGGGGCCCCACGGACCCCCGGCGTAGGTCGCGTAATTTGGGTAAGGTCATCGATACCCT
TACATGCGGCTTCGCCGACCTCATGGGGTACATTCCGCTCGTCGGCGGCCCCCTAGGGGG
CGCTGCCAGGGCCCTGGCGCATGGCGTCCGGGTTCTGGAGGACGGCGTGAACTATGCAAC
AGGGAATTTGCCCGGTTGCTCTTTCTCTATCTTCCTCTTGGCCTTGCTGTCCTGTTTGAC
CATCCCAGCTTCCGCTTATGAAGTGCGCAACGTGTCCGGGGTGTACCATGTCACGAACGA
CTGCTCCAACTCAAGTATTGTGTATGAGGCAGC----GGACATGATTATGCACACCCCCG
GGTGCGTGCCCTGCGTCCGGGAGAATGATTGTTCCCGCTGCTGGGTAGCGCTCACTCCCA
CGCTCGCGGCCAGGAACAGCAGCATCCCCACTACGACAATACGACGCCATGTCGATTTGC
TCGTTGGGGCAGCTGCTTTCTGTTCCGCTATGTACGTGGGGGATCTCTGCGGATCCATTT
TCCTCGTCTCCCAATTGTTCACCTTCTCACCTCGCCGGTATTGGACGGTACAAGACTGCA
ATTGCTCAATCTATCCCGGCCACGTATCAGGTCACCGTATGGCTTGGGATATGATGATGA
ACTGGTCGCCCACAACAGCACTAGTGGTGTCGCAGTTGCTCCGGATCCCACAATCCGTCG
TGGACATGGTAGCGGGAGCCCACTGGGGAGTCTTGGCGGGCCTTGCCTACTATTCCATGG
TAGGGAACTGGGCTAAGGTTTTGATTGTGATGCTACTCTTTGCCGGCGTTGATGGGGT--
-AACCCACATGACGGGGGGGCAGGTATCCCACAACACCCGGAGCTTTATGTCCCTCTTCA
CATGTGGGCCGTCTCAGAAAATCCAACTCATAAACACCAACGGCAGCTGGCACATCAACA
GGACTGCCCTGAATTGCAATGACTCCCTCCAGACTGGGTTCCTTGCCGCGCTGTTCTATG
CACACAATCTCAACTCGTCCGGATGCCCAGAGCGTATGGCCAGCTGTCGCTCCATTGACA
AATTCGCTCAGGGGTGGGGTCCCAT------TACTCATGTAGTGCCTGACACCTGGGACC
AGAGGCCTTATTGCTGGCACTACGCACCTAAACCGTGTGGTATTGTACCCGCGTCGCAGG
TGTGTGGTCCAGTGTATTGCTTCACCCCGAGCCCTGTTGTGGTGGGGACGACCGATCGTT
TCGGCGTCCCCACGTATACCTGGGGGGAGAATGAGACGGACGTGCTATTCCTCAACAACA
CGCGGCCGCCGCAAGGCAACTGGTTCGGCTGTACATGGATGAACAGCACCGGGTTCACCA
AGACGTGCGGGGGCCCCCCGTGTAACATCGGGGGGGTTGGCAA---CAACAC---CTTGA
TCTGCCCTACGGATTGTTTCCGGAAGCACCCCGAGGCCACTTACACCAAATGTGGCTCGG
GGCCTTGGTTGACACCTAGGTGTATGGTTGATTACCCATATAGGCTTTGGCACTACCCCT
GCACTGTCAACTTTACCATCTTCAAAGTCAGGATGTATGTGGGGGGCGTGGAGCACAGGC
TCAACGCCGCGTGCAATTGGACTCGAGGAGAGCGTTGTGACTTGGAGGACAGGGATAGAT
CAGAGCTTAGCCCGCTGCTACTGTCCACAACAGAGTGGCAGGTACTGCCCTGTTCCTTCA
CCCCCCTACCGGCTCTGTCCACTGGGTTGATCCACCTCCATCAGAACATCGTGGACGTGC
AATACCTGTACGGTATAGGGTCAGCGGTCGTCTCCG---TTGTAATCAAATGGGAGTACG
TCCTGCTGCTCTTCCTCCTCCTGGCGGACGCGCGCGTATGCTCCTGTTTATGGATGATGT
TGCTGATAGCCCAGGCTGAGGCCGCCTTAGAGAACCTGGTGGTCCTCAATGCGGCG----
--TCCGTGGCCGGAGCGCATGGCACTCTTTCCTTCCTTGTGTTCTTCTGTGCTGCCTGGT
ACATCAAGGGTAAGCTGGTCCCTGGGGCGGCATATGCTCTCTATGGCGTATGGCCGCTGC
TTCTGCTCCTGCTGGCGTTACCACACCGAGCATACGCC----ATGGACCCGGAGATGGCT
GCATCGTGCGGAGGCGCGGTTTTCGTAGGTCTG---GCACTCTTGACCTTGTCACCACAT
TACAAAGCATTCCTCGCTAGGCTCATATGGTGGTTACAGTACTTTATCACCAGGGCCGAG
GCGCATTTGCAAGTGTGGATCCCCCCTCTCAACGTTCGGGGGGGCCGCGACGCCATCATC
CTCCTCGCATGCGCAGTCCACCCAGAGCTAATTTTTGACATCACCAAAATCCTGCTTGCC
ATACTTGGTCC-GCTCATGGTGCTCC---AGGCTGGTCTAACTAGAGTGCCGTACTTCGT
ACGCGCTCAAGGGCTCATCCGTGTTTGCATGTTAGTGCGGAAAGTTGCTGGGGGCCATTA
TTTCCAAATGGCTCTCATGAAGCTGGCCGCACTGACGGGCACGTACGTTTATGACCATCT
TACTCCGCTGCGGGACTGGGCCCACGTGGGCCTGCGAGACCTTGCGGTGGCGGTTGAGCC
TGTTGTCTTCTCTGACATGGAGACCAAGATCATTACCTGGGGGGCAGACACCGCGGCGTG
TGGGGACATCATCTCGGGTCTACCCGTCTCCGCTCGAAGGGGGAGGGAGATACTCCTGGG
ACCGGCCGATAGTTTTAGAGAGCAGGGATGGAGGCTCCTTGCGCCTATAACGGCCTACTC
CCAACAGACGCGGGGCCTACTTGGCTGCATCATCACTAGCCTCACAGGCCGGGACAAGA-
--ACCAGGTCGAAGGGGAAGTTCAGGTGGTTTCCACCGCAACGCAATCTTTCCTAGCGAC
CTGTGTTAACGGCGTGTGTTGGACTGTCTACCATGGTGCCGGCTCAAAGACCCTAGCCGG
CCCAAAGGGCCCGATCACCCAAATGTACACCAATGTGGACCAGGACCTCGTCGGCTGGCA
GGCGCCCCCTGGAGCGCGTTCCCTGACACCATGCACCTGCGGCAGCTCGGACCTTTACTT
GGTCACGAGGCATGCTGATGTTATTCCGGTGCGCCGGCGGGGCGACAGCAGAGGGAGCCT
ACTCTCCCCCAGGCCTGTCTCCTACTTGAAGGGCTCCTCGGGTGGTCCACTGCTCTGCCC
TTCGGGACACGCTGTTGGCATCTTCCGGGCCGCTGTGTGCACTCGGGGGGTTGCGAAGGC
GGTGGACTTTATACCTGTTGAGTCTATGGAAACCACTATGCGGTCTCCGGTCTTTACGGA
CAACTCATCTCCTCCGGCCGTACCGCAGACATTCCAAGTGGCCCATCTACACGCTCCTAC
CGGCAGCGGCAAGAGCACTAAGGTGCCGGCTGCATACGCGGCCCAAGGGTACAAGGTGCT
CGTCCTGAACCCGTCTGTTGCCGCCACCTTAAGTTTTGGGGCGTATATGTCCAAAGCACA
TGGTGTTGACCCTAACATCAGAACTGGGGTAAGGACCATCACCACAGGCGCTCCCATCAC
GTACTCCACCTATGGCAAGTTCCTTGCCGACGGTGGTTGCTCTGGGGGCGCCTATGACAT
CATAATATGTGATGAGTGCCACTCAACTGACTCGACCTCCATCTTGGGCATTGGCACAGT
CCTGGACCAAGCGGAGACGGCTGGAGCGCGGCTCGTCTTGCTCGCCACCGCTACGCCTCC
GGGATCGGTCACCGTGCCACATCCCAATATCGAAGAGGTGGCCTTGTCCAACACTGGAGA
GATTCCCTTCTATGGCAAAGCCATCCCCATCGAGACCATCAAGGGGGGGAGGCATCTCAT
TTTCTGCCACTCCAAGAAGAAATGTGATGAGCTCGCCGCAAAATTGTCGGCCCTCGGAGT
TAATGCTGTAGCGTACTACCGGGGTCTTGATGTGTCCGTCATACCGACAAGCGGAAACGT
CGTTGTCGTGGCAACAGACGCTCTTATGACGGGCTATACCGGCGACTTTGACTCAGTGAT
CGACTGTAACACATGTGTCACCCAGACAGTCGATTTCAGCTTGGACCCTAC---------
------------------------------------------------------------
----------------------------CTTCACCATTGAGACGACAACTGTGCCCCAAG
ACGCGGTGTCGCGCTCACAACGGCGAGGCAGGACTGGTAGGGGCAGAGCGGGTATATACA
GGTTTGTGACTCCAGGGGAACGGCCTTCGGGCATGTTCGATTCTTCGGTCCT--------
-----------------------------GTGTGAATGCTATGACGCGGGCTGTGCTTGG
TACGAGCTCACGCCCGCCGAGACCTCGGTGAGGTTGCGGGCTTACCTGAATACACCAGGG
TTGCCCGTCTGCCAGGATCATCTGGAGTTCTGGGAGAGCGTCTTCACAGGCCTCACCCAC
ATAGATGCCCACTTCTTGTCCCAGACTAAACAGGCAGGAGACAACTTCCCCTACCTGGTA
GCATACCAGGCTACGGTGTGCGCCAGGGCCCAGGCTCCACCTCCATCATGGGATCAAATG
TGGAAATGTCTCATACGGTTAAAGCCTACGCTACACGGGCCAACGCCCCTGTTGTATAGG
CTGGGAGCCGTCCAAAACGAGGTCACCCTCACACACCCCATAACCAAATTCATCATGGCA
TGCATGTCGGCTGACCTAGAGGTCGTCACGAGTACCTGGGTGCTAGTGGGCGGGGTCCTT
GCAGCTCTGGCCGCATACTGCCTGACAACGGGCAGCGTGGTCATTGTGGGCAGGAT-CAT
CTTGTCCGGGAAGCCAGCTGTTATTCCCGACAGGGAGGTTCTCTACCGGGAGTTCGATGA
AATGGAAGAGTGTGCCTCACACCTCCCTTACATCGAACAGGGAATGCAGCTCGCCGAGCA
ATTCAAGCAGAAGGCGCTCGGGTTGTTGCAAACAGCCACCAAGCAAGCGGAGGCCGCTGC
TCCCGTGGTGGAGTCCAAATGGCGAGCCCTTGAGACCTTCTGGGCAAAGCACATGTGGAA
CTTCATCAGCGGGATACAGTATTTAGCAGGCTTGTCCACTCTGCCTGGGAACCCCGCGAT
AGCATCATTGATGGCATTCACAGCCTCTATCACCAGCCCTCT-CACCACCCAACATACCC
TCTTGTTTAACATCTTGGGGGGATGGGTGGCCGCCCAACTCGCCCCCCCCAGCGCTGCCT
CAGCTTTTGTGGGCGCCGGCATCGCTGGCGCGGCTGTTGGCAGCATAGGCCTTGGGAAGG
TGCTTGTGGACATCTTGGCGGGTTATGGGGCAGGGGTGGCAGGCGCGCTCGTGGCCTTTA
AGGTCATGAGCGGCGAGATGCCCTCCGCCGAGGACATGGTCAACTTACTCCCAGCCATCC
TCTCTCCTGGTGCCCTGGTCGTCGGGGTCGTGTGCGCAGCAATACTGCGTCGGCATGTGG
GCCCAGGAGAGGGGGCTGTGCAGTGGATGAACCGGCTGATAGCGTTCGCTTCACGGGGTA
ACCACGTCTCCCCCACGCATTATGTGCCTGAGAGCGACGCCGCAGCGCGTGTCACCCAGA
TCCTCTCCAGCCTTACCATCACTCAGCTGTTGAAGAGGCTCCATCAGTGGATTAATGAGG
ACTGCTCCACGCCGTGCTCCGGTTCGTGGCTAAGGGATGTTTGGGACTGGATATGCACGG
TGTTGACCGACTTCAAGACCTGGCTCCAGTCCAAGCTCCTGCCGCGGTTGCCGGGAGTCC
CTTTCTTCTCATGCCAACGTGGGTATAAGGGAGTCTGGCTGGGAGATGGCGTCATGCAAA
CCACCTGCCCCTGTGGAGCACAAATCTCCGGACATGTCAAAAACGGTTCCATGAAGATCG
TTGGACCTAAGACCTGCAGCAACACGTGGCATGGAACATTCCCCATCAACGCATACACCA
CGGGCCCCTGCACACCCTCCCCGGCGCCAAACTATTCTAGGGCGT--TGTGGCGGGTAGC
TGCCGAGGAGTACGTGGAGGTTACGCGGGTGGGGGAATTCCACTACGTGACAGGCATGAC
CACTGACAACGTGAAATGCCCATGCCAGGTCCCGAGCCCTGAATTCTTCACGGAGGTGGA
TGGGGTGCGGTTGCACAGGTATGCTCCGGCGTGCAAACCTCTCCTACGGGATGAGGTCAC
ATTCCAGGTCGGGCTCAACCAATATCCGGTTGGGTCACAGCTCCCATGTGAGCCCGAACC
GGATGTGGCAGTGCTCACTTCCATGCTTACCGACCCCTCCCATATTACAGCAGAGACGGC
TAGGCGTAGGCTGGCCAGGGGGTCT------CCCCCCTCCTTGGCCAGCTCTTCGGCTAG
TCAGTTGTCTGCGCCCTCCTTGAAGGCGACATGCACTACCTGCCATGATTCCCCAGACGC
TGACCTCATCGAGGCCAACCTCCTGTGGCGGCAGGAGATGGGCGGAAACATCACCCGCGT
GGAGTCAGAGAATAAGGTAGTAATTCTAGACTCTTTTGACCCGCTTCGGGCGGAGGAGGA
TGAGAGGGAGGTATCCGTTGCGGCGGAGATCCTGCGGAAAACCAGGAAATTCCCCCCAGC
GATACCCATAT--------------------------------------GGGCACGCCCG
GACTACAATCCACCACTGTTAGAGTCTTGGAAGGATCCGGACTACGTCCCTCCGGTGGTA
CACGGGTGCCCATTGCCACCTACCAAAGCCCCTCCAATACCACCTCCACGGAGGAAGAGG
ACAGTTATCCTGACAGAATCCACCGTGTCTTCTGCCCTGGCGGAGCTTGCTACTAAGACC
TTCGG-CAGCTC------------CGGATCGTCAG--CCGTGGACAGCGGCACA-GCGAC
CGCCCCTCCTGACCAGCCCTCCGACGACGGGGATACAGGATCCGACGTTGGGTCGTACTC
CTCCATGCCCCCCCTTGAGGGGGAGCCGGGGGACCCCGATCT------------------
----------------CAGCGA---------------------------CGGGTCTTGGT
CTACTGTGAGCGAGGAGGCCGGTGAGGACGTCGTCTGCTGCTCGATGTCCTACACATGGA
CAGGCGCCTTAATCACGCCATGCGGCGCGGAGGAGACTAAGCTGCCCATCAATGCGTTGA
GCAACTCTTTGCTGCGTCACCACAACATGGTCTATGCCACAACATCCCGCAGCGCAAGCC
AGCGGCAGAGAAAGGTCACCTTTGACAGACTGCAAGTCCTGGACGACCACTACCGGGACG
TGCTCAAGGAGATGAAGGCGAAGGCGTCCACAGTTAAGGCTAAACTTCTATCCGTAGAAG
AAGCCTGCAAGCTGACGCCCCCACATTCGGCCAGATCCAAGTTTGGCTATGGGGCAAAGG
ACGTCCGGAACCTATCCAGCAAGGCCGTTAACCACATCCGCTCCGTGTGGAAGGACTTGC
TGGAAGACACTGAAACACCAATAAACACCACCATCATGGCAAAAAGTGAGGTCTTCTGTG
TTCAACCAGAGAAAGGAGGCCGCAAGCCAGCTCGCCTTATCGTATTCCCAGATTTGGGGG
TTCGTGTGTGCGAGAAAATGGCCCTTTACGACGTGGTCTCCACTCTTCCCCAAGCCGTGA
TGGGCTCCTCATACGGGTTCCAGTACTCTCCTGGGCAGCGGGTCGAGTTCCTGGTGAATG
CCTGGAAATCAAAGAAAAGCCCTATGGGCTTCGCATATGACACCCGCTGTTTTGACTCAA
CGGTCACTGAGAGTGACATCCGTGTTGAGGAGTCAATTTACCAATGTTGTGACTTGGCCC
CCGAGGCCAGACAGGTCATAAGGTCGCTCACAGAGCGGCTTTATATCGGGGGTCCCCTGA
CTAATTCAAAAGGGCAGAACTGCGGTTATCGCCGGTGCCGCGCCAGCGGTGTGCTGACGA
CTAGCTGTGGCAATACCCTTACATGTTACTTGAAGGCCTCTGCAGCCTGTCGAGCTGCGA
AGCTCCAGGACTGCACGATGCTCGTGTGCGGAGACGACCTTGTCGTTATCTGTGAGAGCG
CGGGGACCCAGGAGGACGCGGCGAACCTACGAGTCTTCACGGAGGCTATGACTAGGTACT
CTGCCCCCCCCGGGGACCCGCCCCGACCGGAATACGACCTGGAGTTGATAACATCATGTT
CCTCCAACGTGTCGGTCGCGCACGATGCAGCTGGCAAACGGGTGTACTACCTCACCCGCG
ACCCCATCACCCCCCTCGCGCGGGCTGCGTGGGAGACAGCCAGACACACTCCAGTCAACT
CCTGGCTAGGCAACATCATCATGTATGCGCCCACCTTGTGGGCAAGGATGATCTTGATGA
CCCACTTCTTCTCCATCCTTCTAGCTCAGGAGCAACTTGAAAAGGCCCTAGATTGTCAGA
TCTATGGGGCCGTTTACTCCATTGAACCACTTGACCTACCTCAGATCATTCAACGACTCC
ATGGTCTTAGCGCATTTTCACTCCATAGTTACTCTCCAGGTGAGATCAATAGGGTGGCTT
CATGCCTCAGGAAACTTGGGGTACCACCCTTGCGAGTCTGGAGACATCGGGC--------
CAGGAGTGTCCGTGCTAAGCTACTGTCTCAGGGGGGGAGGGCCGCCACTTGTGGCAAATA
CCTCTTCAACTGGGCAGTAAGGACCAAGCTCAAACTCACTCCAATCCCGGCTGCGTC-CC
AGTTGGACTTGTCCGGCTGGTTCGTTGCTGGCTACAGCGGGGGAGACATAT-ATCACAGC
CTG-TCTCGTGCCCGACCCCGCTGGTTCATGTGGTAGCCTACTCCTACTTTCTGTAGGGG
TAGGCATCTATCTGCTCCCCAACCGGT-GAGTGGGG------AGCTAAACACTCCAGGCC
AATAGGCCATCCTG---------------------------TTTTTTT-TTTTCCCTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTT---------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------
> 3:1-9618 + hcv-half2.fasta
-GCCAGCCCCCGATTGGGGGCGACACTCCACCATAGATCACTCCCCTGTGAGGAACTACT
GTCTTCACGCAGAAAGCGTCTAGCCATGGCGTTAGTATGAGTGTCGTGCAGCCTCCAGGA
CCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCA
GGACGACCGGGTCCTTTCTTGGATCAA-CCCGCTCAATGCCTGGAGATTTGGGCGTGCCC
CCGCGAGACTGCTAGCCGAGTAGTGTTGGGTCGCGAAAGGCCTTGTGGTACTGCCTGATA
GGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCATCATGAGCACAAATCCTAA
ACCTCAAAGAAAAACCAAACGTAACACCAACCGCCGCCCACAGGACGTTAAGTTCCCGGG
CGGTGGTCAGATCGTTGGTGGAGTTTACCTGTTGCCGCGCAGGGGCCCCAGGTTGGGTGT
GCGCGCGACTAGGAAGACTTCCGAGCGGTCGCAACCTCGTGGAAGGCGACAACCTATCCC
CAAGGCTCGCCGGCCCGAGGGCAGGACCTGGGCTCAGCCCGGGTATCCTTGGCCCCTCTA
CGGCAACGAGGGCATGGGGTGGGCAGGATGGCTCCTGTCACCCCGTGGTTCCCGGCCTAG
TTGGGGCCCCACGGACCCCCGGCGTAGGTCGCGTAATTTGGGTAAGGTCATCGATACCCT
CACATGCGGCTTCGCCGACCTCATGGGGTACATTCCGCTCGTCGGCGCCCCCCTAGGGGG
CGCTGCCAGGGCCCTGGCACATGGTGTCCGGGTTCTGGAAGACAGCGTGAACTATGCAAC
AGGGAATTTGCCCGGTTGCTCTTTCTCTATCTTCCTCTTGGCTTTGCTGTCCTGCTTGAC
CACCCCAGCTTCCGCTTATGAAGTGCATAACGTGTCCGGGATATACCATGTCACGAACGA
CTGCTCCAACGCAAGCATTGTGTATGAGGCAGC----GGACATGATCATGCATGCCCCCG
GGTGCGTGCCCTGCGTTCGGGAAGACAACGCCTCCCGCTGCTGGGTAGCACTCACTCCCA
CGCTCGCGGCCAGGAACGCCAGCGTCCCCACTACGACAATACGACGCCACGTCGACTTGC
TCGTTGGGGCGGCTGCTTTCTGTTCCGCTATGTACGTGGGGGATCTCTGCGGATCCGTTT
TCCTCATCTCCCAGCTGTTCACCTTCTCTCCTCGCCGGCATGAGACAGTACAGGACTGCA
ACTGCTCAATCTATCCTGGCCACGTAACAGGTCATCGCATGGCTTGGGATATGATGATGA
ACTGGTCACCTACAACAGCCCTAGTGGTGTCGCAGTTGCTCCGGATCCCACAAGCCGTCA
TGGACATGGTGGCAGGAGCCCACTGGGGAGTCCTGGCGGGCCTTGCCTACTATTCCATGG
CGGGGAACTGGGCTAAGGTTTTGATCGTGATGCTACTCTTTGCCGGCGTTGACGGAAA--
-CACCCACGTGTCGGGGGCGGTGCAAGGCCGCACCGTCTCCTCCCTCGCGAACATCTTCT
CACTTGGGGCGTCTCAGAAAATCCAGCTTATAAACACCAATGGCAGTTGGCACATCAACA
GGACTGCCCTGAACTGTAATGACTCCCTCCAGACTGGGTTTCTTGCCGCGCTGTTCTACG
CACACAAGTTCAACGCGTCCGGATGCCCGGAGCGCATGGCCAGCTGCCGCTCCATTGACA
AGTTCGATCAGGGATGGGGTCCCAT------CACTTATGCTCAACCTAGCAACTTGGACC
AAAGGCCTTACTGCTGGCACTACGCACCTCAACAGTGCGGTATTGTGCCCGCGTCGCAGG
TGTGTGGTCCAGTGTATTGCTTCACCCCAAGCCCTGTTGTGGTGGGGACGACCGATTCTT
CCGGTGTCCCCACATATAGCTGGGGGGAGAATGAGACAGACGTGCTGCTCCTCAATAACA
CGCGCCCGCCGCAAGGCAACTGGTTCGGCTGTACATGGATGAACAGCACTGGGTTCACCA
AGACGTGCGGGGGGCCCCCGTGTAACATCGGGGGGGTCGGCAA---CAACAC---TTTGA
CCTGCCCCACGGACTGCTTCCGGAAGCACCCCGAGGCCACTTACACAAAATGTGGTTCGG
GTCCTTGGTTGACACCTAGGTGCTTAGTTGACTACCCATACAGGCTCTGGCACTACCCCT
GCACTGTCAACTTTACCATCTTCAAGGTTAGGATGTATGTGGGGGGCGTGGAGCACAGAC
TCCATGCTGCATGCAACTGGACTCGGGGAGAGCGTTGCGACTTGGAGGACAGGGATAGAT
CAGAGCTCAGCCCGCTGCTGCTGTCTACGACAGAGTGGCAGATACTGCCCTGTTCCTTCA
CCACCCTACCGGCCTTGTCCACTGGGTTAATCCATCTCCACCAGAACATTGTGGACGTGC
AATACCTGTACGGTATAGGGTCAGCGGTTGTCTCCT---TTGCAATCAAATGGGAGTATG
TCCTGCTGCTTTTCCTTCTCCTGGCGGACGCGCGGGTCTGTGCCTGCTTGTGGATGATGC
TGCTGATAGCCCAGGCTGAGGCCGCCTTAGAAAATCTGGTGGTCCTTAACGCGGCA----
--TCCGTGGCCGGGGCGCATGGCTTTCTCTCCTTCCTTGTGTTTTTCTGTGCCGCCTGGT
ACATTAAGGGCAGGCTGGTCCCTGGGGTGGCATATGCTCTCTATGGCGTATGGCCATTGC
TCCTGCTCCTGCTGGCGTTACCACCACGAGCTTACGCT----ATGGACCGAGAGATGGCT
GCATCGTGCGGAGGCGCGGTTTTTGTAGGCCTG---GCACTTTTGACCTTGTCACCATAC
TATAAGGTGTTACTCGCCAGGCTCATATGGTGGCTACAATATTTCATTGCAAGAGCCGAA
GCGCACTTGCAAGTGTGGGTCCCCCCCCTCAACGTCCGGGGAGGCCGCGACGCCATCATC
CTTCTCACGTGTGCGGCCCACCCAGAGTTAATCTTTGACATCACCAAACTCCTGCTCGCC
ATACTCGGTCC-GCTCATGGTGTTCC---AGGCCGGCATAATTAGAGTGCCGTACTTCGT
ACGCGCTCAAGGGCTCATCCGTGTATGCATGTTAGTGCGGAAAGTCGCTGGGGGTCATTA
TGTCCAAATGGCTCTCATGAAGCTGGCCGCGCTGACAGGTACGTACGTTTATGACCATCT
TACTCCACTGCGGGATTGGGCTCACGCGGGCCTACGAGACCTTGCGGTGGCAGTAGAACC
CGTCGTCTTCTCTGACATGGAGACCAAGATCATCACATGGGGGGCGGACACCGCGGCGTG
TGGGGACATCATCTCGGGTCTACCTGTCTCCGCCCGAAGGGGAAAGGAGATACTTCTGGG
ACCTGCCGACAGTCTTGAGGGCCGGGGGTGGCGACTCCTTGCGCCAATCACGGCCTACTC
CCAACAGACACGGGGCCTACTTGGTTGTATCATCACTAGCCTCACAGGCCGGGACAAGA-
--ACCAAGTCGAGGGGGAGGTTCAAGTGGTTTCCACCGCAACACAATCTTTCCTGGCGTC
CTGTGTCAACGGCGTGTGTTGGACCGTCTACCATGGCGCCGGCTCAAAGACCCTAGCCGG
CCCAAAAGGTCCAATTACCCAGATGTACACTAATGTAGACCAGGACCTCGTCGGCTGGCA
GGCGCCCCCCGGGGCGCGTTCCATGACACCGTGCACCTGTGGCAGCTCGGACCTCTACTT
GGTCACGAGACATGCCGATGTCATTCCGGTGCGCCGGCGGGGCGACGGTAGGGGAAGTCT
ACTCTCCCCCAGGCCTGTCTCCTACTTGAAGGGCTCTTCGGGTGGTCCGCTGCTCTGCCC
TTCGGGGCACGTTGTGGGCATCTTCCGAGCTGCCGTGTGCACCCGGGGGGTTGCGAAGGC
GGTGGACTTTGTGCCCGTTGAGTCTATGGAAACCACCATGCGGTCTCCGGTCTTCACAGA
CAACTCGTCCCCCCCGGCTGTACCGCAGACATTCCAAGTGGCCCATTTACACGCCCCCAC
TGGCAGCGGCAAGAGCACCAAAGTGCCGGCTGCATATGCGGCCCAAGGGTACAAGGTACT
CGTCCTGAATCCGTCCGTTGCCGCCACCCTGGGTTTTGGGGCGTATATGTCTAAGGCACA
TGGTACCGACCCTAACATCAGAACTGGGATAAGGACCATCACCACGGGCGCCCCCATCAC
GTACTCCACCTATGGCAAGTTCCTTGCCGACGGTGGTTGCTCCGGGGGCGCCTATGACAT
CATAATATGTGATGAGTGCCACTCAACTGACTCGACCACCATCTTGGGCATTGGCACAGT
CCTGGACCAAGCGGAGACGGCTGGAGCGCGGCTTGTCGTGCTCGCCACCGCTACGCCTCC
AGGATCGGTCACCGTGCCACACCCCAATATCGAGGAGGTGGCCCTGTCCAACACTGGGGA
GATCCCCTTCTATGGCAAAGCCATCCCCATTGAGGCCATCAAGGGGGGAAGGCATCTCAT
CTTCTGCCATTCCAAGAAGAAGTGTGACGAGCTCGCCGCAAAGCTGTCGGGCCTCGGAAT
TAATGCTATAGCGTATTACCGAGGCCTTGATGTGTCCGTCATACCGACCAGCGGAGACGT
CGTTGTCGTGGCAACGGACGCTCTAATGACGGGCTTTACCGGCGACTTTGACTCAGTGAT
CGACTGTAACACATGTGTCACTCAGACAGTCGATTTTAGTTTGGATCCCAC---------
------------------------------------------------------------
----------------------------CTTCACCATCGAGACGACGACCGTGCCCCAAG
ATGCGGTGTCGCGCACGCAGCGGCGAGGTAGGACTGGCAGGGGTAGGAGAGGCATCTACA
GGTTTGTGACTCCAGGAGAACGGCCTTCGGGCATGTTCGATTCTTCGGTCCT--------
-----------------------------GTGTGAGTGTTATGACGCGGGTTGTGCTTGG
TACGAGCTCACGCCCGCTGAGACCTCGGTTAGGTTGCGGGCTTACCTAAACACACCAGGG
TTGCCCGTCTGCCAGGACCATCTGGAGTTCTGGGAGAGTGTCTTCACAGGCCTCACCCAC
ATAGATGCCCACTTCTTGTCCCAAACTAAGCAGGCAGGAGACAACTTCCCCTACCTGGTA
GCATACCAAGCCACGGTATGCGCCAGGGCTCAGGCTCCACCTCCATCGTGGGACCAAATG
TGGAAGTGTCTCATACGGCTTAAGCCTACTCTGCACGGGCCAACGCCCCTGCTGTATAGG
CTAGGGGCCGTCCACAATGAGGTCACCCTCACACACCCCGTAACCAAATACATCATGGCA
TGCATGTCGGCTGACCTGGAGGTCGTCACTAGCACCTGGGTGCTAGTAGGCGGAGTTCTT
GCAGCTTTGGCCGCGTATTGTCTGACAACAGGCAGCGTGGTCATTGTGGGTAGGAT-CAT
CTTGTCCGGGAGGCCGGCCGTCATTCCCGATAGGGAAGTTCTCTACCGAGAGTTCGATGA
GATGGAAGAGTGCGCCTCACACCTCCCTTACATCGAACAGGGAATGCAGCTCGCCGAGCA
GTTCAAACAGAAGGCGCTCGGGTTGCTGCAAACAGCCACCACGCAAGCGGAGGCTGCTGC
TCCCGTGGTGGAGTCCAAGTGGCGAGCCCTCGAGGCCTTTTGGGCGAAGCACATGTGGAA
CTTCATCAGCGGGATACAGTACTTAGCAGGCTTGTCCACTCTGCCTGGGAACCCCGCGAT
AGCATCACTGATGGCATTCACAGCCTCTATCACCAGCCCGCT-CACCACCCAAAGTACCC
TCCTGTTTAACATCTTGGGGGGATGGGTGGCAGCCCARCTCGCCCCCCCCAGCGCTGCTT
CGGCTTTTGTGGGCGCCGGCATTGCCGGCGCGGCTGTTGGCAGCATAGGCCTCGGGAAGG
TGCTTGTGGACATTCTGGCGGGCTATGGGGCAGGGGTGGCTGGCGCACTCGTGGCCTTTA
AGGTCATGAGCGGCGAGATGCCCTCCACCGAGGACCTGGTTAACTTACTCCCTGCCATCC
TCTCTCCTGGCGCCCTGGTCGTCGGGGTCGTGTGCGCAGCAATACTGCGTCGACACGTGG
GCCCGGGAGAGGGGGCTGTGCAGTGGATGAACCGGCTGATAGCGTTCGCTTCGCGGGGTA
ACCATGTCTCCCCCACGCACTATGTGCCTGAAAGCGACGCCGCAGCGCGTGTCACTCAGA
TCCTCTCCAGCCTTACCATCACCCAGTTGCTGAAGAGGCTTCACCAGTGGATTAATGAGG
ACTGCTCCACACCCTGCTCCGGTTCGTGGCTAAGGGATGTTTGGGACTGGATATGCACAG
TGTTGACTGACTTCAAGACCTGGCTCCAGTCCAAGCTCCTGCCGCGGTTGCCGGGAGTCC
CCTTCTTCTCATGCCAACGTGGGTACAAGGGAGTCTGGCGGGGAGACGGCATCATGCAAA
CCACCTGCCCATGTGGAGCACAGATCTCCGGACATGTCAAAAATGGTTCCATGAGGATTG
TTGGGCCTAAAACCTGCAGCAACACGTGGCATGGAACATTCCCCATCAACGCATACACCA
CGGGCCCCTGCACACCCTCCCCAGCGCCAAACTATTCCAGGGCGC--TGTGGCGGGTGGC
TGCTGAGGAGTACGTGGAGGTTACGCGGGTGGGGGATTTCCACTACGTGACGGGCATGAC
CACTGACAACTTAAAGTGCCCATGCCAGGTTCCGACCCCCGAATTCTTCACGGAGGTGGA
TGGAGTGCGGCTGCACAGGTACGCTCCGGCGTGCAAACCCCTCCTACGGGAGGAGGTCGT
ATTCCAGGTCGGGCTCAACCAATATCTGGTTGGGTCACAGCTCCCATGTGAGCCCGAACC
GGATGTAGCAGTGCTCACTTCCATGCTCACCGACCCCTCCCACATCACAGCAGAGACGGC
CAAGCGTAGGCTGGCCAGGGGGTCT------CCCCCCTCCTTGGCCAGCTCTTCAGCTAG
CCAGTTGTCTGCGCCTTCCTTGAAGGCGACATGTACTACCCATCATGACTCCCCGGACGC
TGACCTCATCGAGGCCAACCTCCTGTGGTGGCAGGAGATGGGCGGGAACATCTCCCGTGT
GGAGTCAGAAAATAAGGTGATAATTCTGGACTCCTTCGACCCGCTCCGGGCAGAGGAGGA
TGAGAGGGAAGTATCCGTCCCGGCGGAGATCCTGCGGAAATCCAGGGAGTTCCCCCCAGC
GCTGCCCATAT--------------------------------------GGGCACGCCCG
GATTACAACCCTCCACTGCTGGAGTCCTGGAAGGACCCGGACTACGTCCCTCCGGTGGTA
CACGGGTGCCCATTGCCACCTACCAAGGGCCCTCCAATACCACCTCCACGGAGAAAGAGG
ACGGTTGTCCTGACGGAGTCCACCGTGTCTTCTGCCTTGGCGGAGCTTGCTACTAAGACC
TTTGG-CAGCTC------------CGGATCGTCGG--CCGTCGACAGCGGTACG-GCGAC
CGCTCCTCCTGACCAGACCTCTGACGACGGCGACAAAGGATCCGACGTTGAGTCGTACTC
CTCCATGCCCCCCCTCGAGGGAGAGCCGGGGGACCCCGACCT------------------
----------------CAGCGA---------------------------TGGGTCTTGGT
CTACCGTGAGCGAGGAAGCTGGTGAGGACGTCGTCTGCTGCTCAATGTCCTACACATGGA
CAGGCGCCCTGATTACGCCATGCGCTGCGGAGGAAAGCAAGCTGCCCATCAACGCGCTGA
GCAACTCTTTGCTGCGTCATCACAATATGATCTATGCCACAACATCCCGCAGCGCAGGCC
TGCGGCAGAAGAAGGTCACCTTTGACAGACTGCAGGTCCTGGACGATCACTACCGGGACG
TGCTCAAGGAGATGAAGGCGAAGGCGTCCACAGTAAAGGCTAAACTTCTATCTGTAGAAG
AAGCCTGCAAGCTGACGCCCCCACATTCGGCCAAATCCAAATTTGGCTATGGGGCAAAAG
ACGTCCGGAACCTATCCAGCAAGGCCGTTAACCACATCCGCTCCGTGTGGAAGGACTTGC
TGGAAGACTCTGAAACACCAATTGACACCACCATCATGGCAAAAAATGAGATTTTCTGCG
TCCAGCCAGAGAAAGGAGGCCGCAAACCCGCTCGCCTTATCGTATTCCCAGACTTGGGAG
TTCGTGTATGCGAGAAGATGGCCCTCTACGACGTGGTCTCCACTCTTCCTCAAGCCGTGA
TGGGCTCCTCATATGGATTCCAGTACTCTCCTGGGCAGCGGGTCGAGTTCCTGGTAAATA
CCTGGAAATCAAAGAAATGCCCTATGGGTTTTTCATATGACACCCGTTGCTTTGACTCAA
CGGTCACTGAGAATGACATCCGTATTGAGGAGTCAATCTACCAATGTTGTGACTTGGCCC
CCGAAGCCAGACAGGCCATAAGGTCGCTCACAGAGCGGCTCTATGTCGGGGGTCCCCTGA
CTAATTCAAAAGGGCAGAACTGCGGTTATCGCCGGTGCCGCGCGAGCGGTGTGCTGACGA
CTAGCTGCGGTAATACCCTCACATGCTACTTGAAGGCCTCTGCGGCCTGTCGAGCTGCGA
AGCTCCAGGACTGCACGATGCTCGTGAACGGAGACGACCTTGTCGTTATCTGTGAAAGCG
CGGGAACCCAAGAGGATGCGGCGAGCCTACGAGCCTTCACGGAGGCTATGACTAGGTACT
CCGCCCCCCCCGGGGACCCGCCCCAACCAGAATACGACTTGGAGTTGATAACATCATGCT
CCTCCAATGTGTCGGTCGCGCACGATGCATCTGGCAAAAGGGTGTACTACCTCACTCGTG
ACCCCACCACCCCCCTTGCACGGGCTGCGTGGGAGACAGCTAGACACACTCCAGTTAACT
CCTGGCTAGGCAATATCATCATGTATGCGCCCACCTTGTGGGCAAGGATGATCCTGATGA
CCCATTTCTTTTCCATCCTTCTAGCCCAGGAGCAACTTGAAAAGGCCCTGGATTGTCAAA
TCTACGGGGCCTGTTACTCCATTGAGCCACTTGACCTACCTCAGATCATTGAGCGACTCC
ATGGTCTTAGCGCATTTTCACTCCATAGTTACTCTCCAGGTGAGATCAATAGGGTGGCTT
CATGCCTCAGGAAGCTTGGGGTACCACCCTTGCGAGTCTGGAGACATCGGGC--------
CAGAAGTGTCCGCGCTAAGCTACTGTCCCAGGGGGGGAGGGCAGCCACTTGTGGCAAGTA
CCTCTTCAACTGGGCGGTAAAAACCAAGCTTAAACTCACTCCAATCCCGGCTGCGTC-CC
GGTTGGACTTGTCCGGCTGGTTCGTTGCTGGTTACAGCGGGGGAGACATAT-ATCACAGC
CTGATCTCGTGCCCGACCCCGCTGGTTCATGTTAT-GCCTACTCCTACTTTCYGTAGGGG
TAGGCATCTACCTGCTCCCCAACCGGT-GAACGGGG------AGCTAAACACTCCAGGCC
AATAGGCCATTCCC------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-----------------TTT
TTTTCTCTTCTATTTCTTTATTCCTTCTTTGGTGGCTCCATCTTAGCCCTAGTCACG-GC
TAGCTGTGAAAGGTCCGTGAGC-CGCATGACT-GCAGAGAGTGCTGATACTGGCCTCTCT
GCAGATCATGT--
> 4:1-9573 + hcv-half2.fasta
--------------------------------ATAGATCACTCCCCTGTGAGGAACTACT
GTCTTCACGCAGAAAGCGTCTAGCCATGGCGTTAGTATGAGTGTCGTGCAGCCTCCAGGT
CCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCA
GGACGACCGGGTCCTTTCTTGGATCAA-CCCGCTCAATGCCTGGAGATTTGGGCGTGCCC
CCGCGAGACTGCTAGCCGAGTAGTGTTGGGTCGCGAAAGGCCTTGTGGTACTGCCTGATA
GGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCATCATGAGCACAAATCCTAA
ACCTCAAAGAAAAACCAAACGTAACACCAACCGCCGCCCACAGGACGTCAAGTTCCCGGG
CGGTGGTCAGATCGTTGGTGGAGTTTACCTGTTGCCGCGCAGGGGCCCCAGGTTGGGTGT
GCGCGCGACTAGGAAGACTTCCGAGCGGTCGCAACCTCGTGGAAGGCGACAACCTATCCC
CAAGGCTCGTCGACCCGAGGGCAGGACCTGGGCTCAGCCCGGGTACCCTTGGCCCCTCTA
TGGCAATGAGGGCCTGGGGTGGGCAGGATGGCTCCTGTCACCCCGCGGCTCCCGGCCTAG
TTGGGGCCCCACGGACCCCCGGCGTAGGTCGCGTAATCTGGGTAAGGTCATCGATACCCT
TACATGCGGCTTCGCCGACCTCATGGGGTACATTCCGCTCGTCGGCGCCCCCTTAGGGGG
CGCTGCCAGGGCCCTGGCGCATGGCGTCCGGGTTCTGGAGGACGGCGTGAACTATGCAAC
AGGGAATCTGCCCGGTTGCTCTTTCTCTATCTTCCTCTTGGCTTTGCTGTCCTGTTTGAC
CATCCCAGCATCCGCCCATGAAGTGCGCAACGCGTCCGGGGTGTACCATGTCACGAACGA
CTGCTCAAACTCAAGCATTGTGCAGGAGGCAGC----GGACATGATCATGCACACCCCCG
GGTGCGTGCCCTGCGTCCGGGAGAGCAATTCCTCCCGCTGCTGGGTAGCGCTCACTCCCA
CGCTCGCGGCCAGGAACAGCAGCATCCCCACCACGACGATACGGCGCCACGTCGATTTGC
TCGTTGGGGCGGCTGCTCTCTGCTCCGCTATGTACGTGGGGGATCTCTGCGGATCTGTTT
TTCTCGTCTCCCAGCTGTTCACCTTCTCACCCCGCCGGTATGAGACGGTACAGGACTGCA
ATTGCTCGATCTATCCCGGCCACGTATCAGGTCACCGCATGGCTTGGGATATGATGATGA
ATTGGTCACCTACAACAGCCTTGGTGGTATCGCAGTTGCTCCGGATCCCACAAGCCGTCA
TGGATATGGTGGCGGGAGCCCACTGGGGAGTCCTGGCGGGCCTTGCCTACTATTCCATGG
TGGGGAACTGGGCTAAGGTCTTGATTGTGATGCTACTCTTTGCCGGCGTCGACGGGCA--
-AACCCGCGTGTCTGGGGGGACGGCAGGCCGCACCACTTTTGGCCTTACGTCCTTCTTCA
CACTTGGGCCGAACCAGAAAATCCAACTTATAAACACCAATGGCAGCTGGCACATCAACA
GGACTGCCCTGAATTGCAATGACTCCCTCAACACCGGGTTCCTTGCCGCGCTGTTCTACG
CACACAGGTTCAACTCGTCCGGATGCCCAGAGCGTATGGCCAGCTGTCGCCCCATCGACA
AGTTCGCTCAGGGGTGGGGTCCTAT------CACTCATGTTGAGCCTGACATCTTGGACC
AGAGGCCTTATTGCTGGCACTATGCACCTCGACCGTGCGGTATTGTACCCGCGTCGGAGG
TGTGTGGTCCAGTGTATTGCTTCACCCCAAGCCCTGTTGTGGTGGGAACGACCGATCGCT
CTGGCGCCCCCACGTATAGCTGGGGGGAGAATGAGACGGACGTACTACTCCTCAACAACA
CGCGGCCGCCGCAAGGCAACTGGTTCGGCTGCACATGGATGAACAGCACCGGGTTCACCA
AGACGTGCGGGGGCCCCCCCTGTAATATCGGGGGGGTCGGCAA---CAACAC---CTTGA
CCTGCCCTACAGATTGCTTCCGGAAGCACCCCGAGGCCACTTACACCAAATGCGGCTCGG
GGCCTTGGTTGACACCCAAATGTATGGTTCATTACCCATACAGGCTTTGGCACTACCCCT
GCACTGTCAACTTTACCATCTTCAAGGTCAGGATGTATGTGGGGGGCGTGGAGCATAGGC
TCAACGCCGCGTGCAATTGGACTCGAGGAGAACGCTGTGACTTGGAGGACAGGGATAGAT
CAGAGCTCAGTCCGCTGCTGCTGTCTACAACAGAGTGGCAGGTGCTGCCCTGTTCCTTCA
CCACCCTACCGGCTTTGTCCACTGGTTTGATCCACCTCCATCAGAACATCGTGGACGTGC
AATACCTGTACGGCGTAGGGTCGGCGGTTGTCTCCG---TTGTCATCAAGTGGGAATATG
TCCTGCTGCTCTTCCTCCTCCTGGCGGACGCGCGCGTCTGCGCCTGCTTATGGATGATGC
TGCTGATAGCCCAAGCTGAGGCTGCCTTAGAGAACCTGGTAGTCCTCAATGCGGCG----
--TCCGTGGCCGGAGCGCACGGCGTTCTCTCCTTTCTTGTGTTTTTCTGTGCTGCCTGGT
ACATCAAGGGCAAGCTGGTCCCTGGGGCGGCATATGCCTTTTATGGCGTATGGCCGCTGC
TTCTGCTCCTGCTGGCGTTACCACAACGAGCATACGCC----ATGGACCGGGAGATGGCT
GCATCGTGCGGAGGCGCGGTTTTCATAGGTCTG---GTACTCCTGACCTTGTCACCACAC
TACAAAGTGTTCCTCGCCAGGCTCATATGGTGGTTGCAATATTTCATCACCAGGACCGAG
GCGCACTTGCAAGTGTGGATCCCCCCTCTCAACGTTCGGGGGGGCCGCGATGCCATCATC
CTCCTCACATGTGCGGTCCACTCAGAGCTAATTTTTGAAATCACCAAAATCTTGCTCGCC
ATACTCGGTCC-GCTCATGGTGCTCC---AGGCTGGCCTAACTAGAGTGCCGTACTTCGT
GCGCGCTCAAGGGCTCATCCGTGCATGCATGTTGGTGCGGAAGGTCGCTGGGGGTCATTA
TGTCCAAATGGTTCTCATGAAGCTGGCCGCACTGACGGGCACGTACGTTTACAACCATCT
TACTCCGCTGCGGGATTGGGCCCACACGGGCCTGCAAGACCTTGTGGTGGCAGTTGAGCC
CGTCGTCTTCTCTGATATGGAGACCAAGATCATCACCTGGGGGGCAGACACCGCGGCGTG
TGGGGACATCATCTTGGGCCTGCCCGTCTCCGCTCGAAGGGGGAGGGAGATACTCCTGGG
ACCGGCTGATAGATTTGGAGAGCAAGGATGGCGACTCCTTGCGCCTATCACGGCCTACTC
CCAACAGACGCGGGGCCTACTTGGATGCATCATCACTAGCCTCACAGGTCGGGACAAGA-
--ACCAGGTCGAGGGGGAAGTTCAGGTGGTTTCCACCGCGACGCAATCCTTCCTGGCGAC
CTGTGTCAACGGCGTGTGTTGGACTGTCTACCATGGTGCCGGCTCAAAGACCCTAGCCGG
CCCAAAGGGTCCAATCACCCAAATGTACACCAATGTAGACCAGGACCTCGTCGGCTGGCA
GGCGCCTCCCGGGGCGCGTTCCATGACACCATGCACCTGCGGCAGCTCGGACCTTTATTT
GGTCACAAGGCATGCCGATGTTATTCCGGTGCGCCGGCGGGGCGACAACAGAGGAAGCCT
ACTCTCCCCCAGGCCTATCTCCTATTTGAAGGGGTCCTCGGGTGGTCCACTGCTCTGCCC
CTCGGGGCACGTTGTGGGCATCTTCCGGGCCGCCGTGTGCACCCGAGGGGTTGCTAAGGC
GGTGGAATTCATACCCGTTGAGTCCATGGAAACTACTATGCGGTCCCCGGTCTTCACAGA
CAACTCATCTCCCCCGGCCGTACCGCAGACATTCCAAGTGGCCCACCTACACGCTCCCAC
CGGCAGCGGCAAGAGTACTAAGGTGCCGGCTGCATATGCAGCCCAAGGGTACAAGGTACT
CGTCTTAAACCCGTCCGTTGCCGCCACTTTAGGTTTTGGGGCGTATATGTCTAAGGCACA
TGGTGTTGACCCCAACATCAGAACTGGGGTAAGGACCATCACCACGGGCGCCCCCATTAC
ATACTCCACCTATGGTAAGTTCCTTGCCGACGGTGGTTGCTCTGGGGGCGCCTATGACAT
CATAATATGTGATGAGTGCCACTCAACTGACTCAACCTCCATCCTGGGCATTGGCACAGT
CCTGGACCAAGCGGAGACGGCTGGAGCGCGACTCGTCGTGCTCGCCACCGCTACACCTCC
GGGATCAATCACCGTGCCACATCCCAATATCGAGGAGGTAGCCTTGTCCAACACCGGAGA
GATTCCCTTCTATGGCAAGGCTATCCCCCTCGAGGTCATCAAGGGGGGGAGACATCTCAT
TTTCTGTCATTCCAAGAAGAAATGTGACGAGCTCGCTGCAAAGTTGTTGGCCCTCGGAGT
GAACGCTGTAGCGTACTACCGGGGTCTTGATGTGTCCGTCATACCGACAAGCGGGGACGT
CGTTGTAGTGGCAACAGACGCTCTGATGACGGGCTACACCGGCGACTTTGACTCAGTGAT
CGACTGTAACACATGTGTCACCCAGACAGTCGATTTCAGCTTGGACCCGAC---------
------------------------------------------------------------
----------------------------CTTCACCATTGAGACGACGACCGTGCCCCAAG
ACGCGGTGTCGCGCTCGCAGCGGCGAGGCAGGACTGGAAGGGGCAGAGGGGGCATATACA
GGTTTGTGACTCCAGGGGAACGGCCCTCGGGCATGTTCGATTCTTCGGTCCT--------
-----------------------------GTGTGAGTGCTATGACGCGGGCTGTGCTTGG
TACGAGCTCACGCCCGCTGAGACTTCGGTCAGGTTGCGGGCTTACCTAAATACACCTGGG
TTGCCCGTCTGCCAGGATCATTTGGAGTTTTGGGAGGGCGTTTTCACAGGCCTCACCCAT
ATAGATGCCCACTTCTTGTCCCAGACTAAGCAGGCAGGAGATCACTTCCCCTATCTGGTA
GCATACCAAGCCACAGTGTGCGCCAGGGCCCAGGCTCCACCTCCATCATGGGACCAAATG
TGGAAGTGTCTCACACGGCTAAAGCCTACGCTACATGGGCCAACGCCCCTGTTGTACAGG
CTAGGAGCCGTCCAAAATGAGGTCACCCTCACACACCCCATAACCAAATTCATCATGACA
TGCATGGCGGCTGACCTAGAGATCGCCACGAGCACCTGGGTGTTAGTGGGCGGGGTCCTT
GCAGCTCTGGCCGCGTACTGTCTGACAACAGGCAGCGTGGTCATTGTGGGCAGGAT-CAT
CTTGTCCGGGAGGCCGGCCGTTGTTCCCGACAGGGAGGTTCTCTATCAGGAGTTCGATGA
AATGGAAGAGTGTGCCTCACACCTCCCCTACATCGAACAGGGAATGCAGCTCGCCGAGCA
ATTCAAGCAGAAGGCGCTCGGATTGCTGCAAACAGCCACCAAACAAGCAGAGGCTGCTGC
TCCCGTGGTGGAGTCCAAATGGCGGGGCCTTGAGGCCTTCTGGGCGAAGCACATGTGGAA
CTTCATCAGCGGGATACAGTATTTAGCAGGCTTGTCCACTCTGCCTGGGAACCCCGCGAT
AGCATCACTGATGGCATTCACAGCCTCTATCACCAGCCCACT-CACCACCCAACATACCC
TCTTGTTCAACATCTTGGGGGGATGGGTAGCTGCCCAACTCGCCCCCCCTAGCGCTGCCT
CAGCTTTCGTGGGCGCCGGCATCGCTGGCGCGGCTGTAGGCAGCATAGGCCTTGGGAAGG
TGCTTGTGGACATTCTGGCTGGTTATGGAGCAGGGGTGGCAGGCGCACTCGTGGCCTTCA
AGGTCATGAGCGGCGAGATGCCCTCCACCGAGGACATGGTCAACTTACTCCCTGCCATCT
TCTCTCCTGGTGCCCTGGTCGTCGGGGTCGTGTGCGCAGCAATACTGCGTCGGCATGTGG
GCCCAGGGGAGGGGGCTGTGCAGTGGATGAACCGGCTGATAGCGTTCGCTTCACGGGGAA
ACCACGTCTCCCCCACGCACTATGTGCCTGAGAGCGACGCCGCAGCGCGTGTCACCCAAG
TCCTCTCCAGCCTTACTATCACTCAGCTGCTGAAGAGGCTCCACCAGTGGATCAATGAGG
ACTGTTCCACGCCATGTTCCGGCTCATGGCTCAGGGACGTTTGGGACTGGATATGCACGG
TATTGACTGATTTCAAGACCTGGCTCCAGTCCAAGCTCCTGCCACGGATGCCGGGAGTTC
CCTTCTTTTCATGCCAACGTGGGTACAAGGGAGTCTGGCGGGGAGATGGTGTTATGCACA
CCACCTGCCCCTGTGGAGCAGACATCACCGGACATGTCAAAAACGGTTCCATGAGGATCG
TTGGGCCCAAAACCTGTAGCAACACGTGGCACGGAACATTCCCCGTCAACGCATACACCA
CAGGCCCCTGCACGCCCTCCCCAGCGCCAAACTATTCCAAGGCGT--TGTGGCGGGTGGC
TGCTGAGGAGTATGTGGAGGTCACGCGGGTGGGGGATTTCCACTACGTGACGGGCATGAC
CACTGACAACGTAAAATGCCCATGCCAGGTTCCGGCCCCTGAATTCTTCACGGAGTTGGA
TGGGGTGCGGTTGCACAGGTACGCTCCGGCGTGCAAACCTCTCCTACGGGATGAGGTCAC
ATTCCAGGTCGGGCTCAACCAGTACCCGGTTGGGTCACAGCTCCCATGTGAGCCCGAACC
GGATGTAACAGTGATCACTTCCATGCTCACCGACCCCTCCCACATCACAGCAGAAGCGGC
CAAGCGCAGGCTGGCCAGGGGGTGT------CCCCCCTCCCTGGCCAGCTCGTCGGCTAG
TCAGCTGTCTGCGCCCTCTTTGAAGGCGACATGCACTACCTACCATGGCTCCCCAGACGC
TGACCTCATCGAGGCCAACCTCCTGTGGCGGCAGGAGATGGGCGGGAACATCACCCGCGT
GGAGTCAGAGAATAAAGTAGTGATTCTAGACTCTTTTGACCCGCTTCGAGCGGAGGAGGA
TGAGAGGGAAGTATCCGTTGCTGCGGAGATCCTGCGGAAAACCAGGAGATTCCCCCCAGC
GCTGCCCATAT--------------------------------------GGGCACGCCCG
GATTACAACCCACCACTGATAGAGTCTTGGAGGAAACCGGATTACGTCCCTCCGGTGGTA
CACGGGTGTCCATTGCCATCTACCAAGGGCCCTCCAATACCACCTCCACGGAGAAAGAGG
ACGGTTATCCTGACAGAATCCACTGTGTCTTCTGCCTTGGCGGAGCTTGCTACAAAGACC
TTCGG-CAGTTC------------CGGATCGTCGG--CCGCCGATAGTGGCACA-GCGAC
CGCCCCTCCTGATCAGACCTCCGACGACGGCGACGCAGGATCCGACGTTGAGTCGTACTC
CTCCATGCCCCCCCTTGAGGGGGAGCCGGGGGACCCCGATCT------------------
----------------CAGTGA---------------------------CGGGTCTTGGT
CTACTGTGAGTGAGGAGGTTGGTGAGGACGTCGTCTGCTGCTCGATGTCCTACACATGGA
CAGGCGCTTTGATCACGCCATGCGCCGCGGAGGAGAGCAAGCTGCCCATCAATGCGTTGA
GCAACTCCCTGCTGCGCCACCACAACATGGTCTACGCCACAACATCCCGCAGCGCAAGCC
AACGGCAGAAGAAGGTCACCTTCGACAGACTACAAGTCCTGGACAACCATTACCAGGACG
TACTCAAGGAGATGAAGGCGAAGGCGTCCACAGTTAAGGCCAAACTTCTATCCGTAGAAG
AAGCCTGCAAGCTGACGCCCCCACATTCGGCCAGATCCAAGTTTGGCTATGGGGCAAAGG
ACGTCCGGAACCTATCCAGCAAGGCCGTCAACCACATCCACTCCGTGTGGAAGGACTTGC
TGGAAGACACTGACACACCAATTGACACCACCATCATGGCAAAAAATGAGGTCTTCTGTG
TTCAACCAGAGAAGGGAGGCCGTAAGGCAGCTCGCCTTATCGTATTCCCAGACTTGGGGG
TTCGTGTGTGCGAGAAGATGGCCCTTTACAACGTGGTCTCCACTCTTCCCCAGGCCGTGA
TGGGCTCCTCATACGGGTTCCAGTACTCTCCTGGACAGCGGGTCGAGTTCCTGGTGAATG
CCTGGAAGTCAAAGAAAACCCCTATGGGCTTTGCATATGACACCCGCTGTTTTGACTCAA
CGGTCACTGAGAGTGACATCCGTGTCGAGGAGTCAATTTACCAATGTTGTGACTTGGCCC
CCGAGGCCAGACAGGTCATAAGGTCGCTCACAGAGCGGCTTTATATCGGGGGCCCCCTGA
CTAATTCAAAAGGGCAGAACTGCGGTTATCGCCGGTGCCGCGCCAGCGGCGTACTGACGA
CTAGCTGCGGTAATACCCTTACATGCTACTTGAAGGCCTCTGCAGCCTGTCGAGCTGCAA
AGCTCCAGGACTGCACGATGCTCGTGTGCGGTGACGACCTCGTCGTCATCTGTGAAAGCG
CGGGAACTCAGGAGGACGCGGCGAGCCTACGAGTCTTCACGGAGGCTATGACTAGGTACT
CTGCCCCCCCCGGGGACCCGCCCCGACCGGAATACGACTTGGAGCTGATAACATCATGCT
CCTCCAACGTGTCGGTCGCGCACGATGCATCTGGCAAACGGGTGTACTACCTCACCCGCG
ACCCCACCACCCCCCTTGCGCGGGCTGCGTGGGAGACAGCCAAACACACTCCAGTCAACT
CCTGGCTAGGCAACATCATTATGTATGCGCCCACCTTATGGGCAAGGATGATCCTGATGA
CCCATTTCTTCTCCATCCTTCTAGCTCAGGAGCAACTTGAAAGAGCCCTGGATTGTCAGA
TCTATGGGGCCATTTACTCCATTCAGCCACTTGACCTACCTCAGATCATTCAGCGACTCC
ATGGTCTTAGCGCATTTTCACTCCATAGTTACTCTCCGGGTGAGATCAATAGGGTGGCTT
CATGCCTCAGGAAACTTGGGGTACCACCCTTGCGAGTCTGGAGACATCGGGC--------
CAGGAGCGTCCGCGCTAAGCTACTGTCCCAGGGGGGGAGGGCCGCCACTTGTGGCAGATA
CCTCTTCAACTGGGCAGTAAGGACCAAGCTCAAACTCACTCCAATCCCGGCTGCGTC-CC
AACTGGATTTGTCCGGCTGGTTCGTTGCTGGTTACAGCGGGGGAGACATAT-ATCACAGC
CTG-TCTCGCGCCCGACCCCGCTGGTTTATGTGGTAGCCTACTCCTACTTTCTGTAGGGG
TAGGCATCTATCTGCTCCCCAACCGGT-GAATGGGG------AGCTAACCACTCCAGGCC
TATAGGCCGTTCCT---------------------------TTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-----------------TTT
TTCTTTTCCCCTTTTTTATTTTTCTTTCTTGGTGGCTCCATCTTAGCCCTAGTCACGAGC
TAGCTGTGAAAGGTCCGTGAGC-CGCATGACT-GCAGAGAGTGCTGATACTGGCCTCTCT
GCAGATCATGT--
> 5:1-9575 + hcv-half2.fasta
--------------------------------ATAGATCACTCCCCTGTGAGGAACTACT
GTCTTCACGCAGAAAGCGTCTAGCCATGGCGTTAGTATGAGTGTCGTGCAGCCTCCAGGA
CCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCA
GGACGACCGGGTCCTTTCTTGGATCAA-CCCGCTCAATGCCTGGAGATTTGGGCGTGCCC
CCGCGAGACTGCTAGCCGAGTAGTGTTGGGTCGCGAAAGGCCTTGTGGTACTGCCTGATA
GGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCATCATGAGCACGAATCCTAA
ACCTCAAAGAAAAACCAAACGTAACACCAACCGCCGCCCACAGGACGTCAAGTTCCCGGG
CGGTGGTCAGATCGTTGGTGGAGTTTACCTGTTGCCGCGCAGGGGCCCCAGGTTGGGTGT
GCGCGCGACTAGGAAGACTTCCGAGCGGTCGCAACCTCGTGGAAGGCGACAACCTATCCC
CAAGGCTCGCCAGCCCGAGGGCAGGGCCTGGGCTCAGCCCGGGTACCCTTGGCCCCTCTA
TGGCAATGAGGGCCTGGGGTGGGCAGGATGGCTCCTGTCACCCCGTGGCTCTCGGCCTAG
TTGGGGCCCCACGGACCCCCGGCGTAGGTCGCGTAATTTGGGTAAAGTCATCGATACCCT
CACATGCGGCTTCGCCGACCTCATGGGGTACATTCCGCTCGTCGGCGCCCCCCTAGGGGG
CGCTGCCAGGGCCCTGGCGCATGGCGTCCGGGTTCTGGAGGACGGCGTGAACTATGCAAC
AGGGAACTTGCCCGGTTGCCCTTTCTCTATCTTCCTCTTGGCTCTGCTGTCTTGTTTGAC
CATCCCAGCTTCCGCTTATGAAGTGCGCAACGTGTCCGGGGTGTACCATGTCACGAACGA
CTGCTCCAACTCAAGTATTGTGTATGAGGCAGC----GGACATGATCATGCACACCCCTG
GATGCGTGCCCTGCGTCCGGGAGGACAACGTCTCCCGCTGCTGGGTAGCGCTCACTCCCA
CGCTCGCGGCCAGGAACAGCAGCATCCCCACTACGACAATACGGCGCCACGTCGACTTGC
TCGTTGGGGCGGCTGCTCTCTGCTCCGCTATGTACGTGGGGGATCTCTGCGGATCTGTCT
TCCTCGTTTCCCAGCTGTTCACCTTCTCACCTCGCCGGTATGAGACGGTACAGACCTGCA
ATTGCTCAATCTATCCCGGCCACGTATCAGGCCACCGCATGGCTTGGGATATGATGATGA
ACTGGTCGCCCACAACAGCCCTAGTGGTATCGCAGTTGCTACGGATCCCACAAGCCGTCG
TGGACATGGTGGCAGGGGCCCACTGGGGAGTCCTGGCGGGCCTTGCCTACTATTCCATGG
TGGGGAACTGGGCTAAGGTCTTGATTGTGATGCTGCTTTTCGCCGGCGTTGATGGGAA--
-CACCCACGTGACAGGGGGACAGGCAGGCCAGCACGCCATCAGGTTTACATCCCTGTTCT
CATCTGGGGCGTCTCAGAAAATCCAACTTATAAACACCAACGGCAGCTGGCACATCAACA
GAACCGCTCTGAATTGCAACGACTCCCTCCACACTGGGTTCATTGCCGCGTTGTTCTACG
CACATAAGTTCAATGCGTCCGGATGCCCGGAGCGCATGGCCAGCTGCCGCCCCATTGACA
AGTTCGACCAGGGGTGGGGCCCCAT------CAGTCATGTTGTGCCTAACATCTCGGACC
AGAGGCCTTATTGCTGGCACTACGCACCTCGACCGTGCGGTATCGTACCCGCGTCGCAGG
TGTGCGGTCCAGTGTATTGCTTCACCCCAAGCCCTGTCGTAGTGGGGACGACCGATCGGT
TCGGCGTCCCCACGTATACCTGGGGGGAGAATGAGACGGACGTGCTGCTCCTCAACAACA
CGCGGCCGCCGCAGGGCAACTGGTTCGGCTGTACATGGATGAATGGCACCGGGTTCACCA
AGACGTGCGGAGGCCCCCCGTGTAATATCGGGGGGGCCGGCAA---CAACAC---CTTGA
CTTGCCCTACGGATTGCTTCCGGAAGCACCCCGAGGCCACTTACACCAAGTGTGGCTCGG
GGCCTTGGTTGACACCTAGGTGCATAGTTGACTATCCATACAGACTTTGGCACTACCCCT
GCACTGTCAACTTTACCATCTTTAAGGTCAGGATGTATGTGGGGGGCGTGGAGCACAGGC
TCAACGCCGCGTGCAACTGGACTCGAGGAGAGCGTTGTAACTTGGAGGACAGGGATAGGT
CAGAGCTTAGCCCGCTGCTACTGTCTACAACAGAGTGGCAGATAATGCCCTGTTCCTTCA
CCACCCTACCGGCTCTGTCCACTGGTTTGATCCATCTCCACCAGAACATTGTGGACGTGC
AATACCTATATGGTGTAGGGTCAGCGGTTGTCTCCA---TTGTCATCAAATGGGAGTACG
TTGTGCTGCTCTTCCTTCTTCTGGCGGACGCGCGCGTCTGCGCCTGTTTGTGGATGATGC
TGCTGATAGCCCAGGCCGAGGCCGCCTTAGAGAACCTGGTGGTCCTCAATGCGGCG----
--TCCGTAGCCGGAGCGCACGGCACCCTCTCCTTCCTTGTGTTCTTCTGTGCAGCCTGGT
ACATCAAGGGCAAGCTGGTCCCCGGGGCGGCATATGCTTTCTATGGCGTGTGGCCGCTGC
TCCTGCTCCTACTGGCGTTACCACCACGGGCGTACGCC----ATGGACCGGGAGATGGCT
GCATCGTGCGGAGGCACGGTTTTCGTAGGTCTG---GTACTCTTGACCCTGTCACCACAC
TATAAGGTATTCCTCGCCAGGCTCATATGGTGGTTACAATACTTCATCACCAGGGCCGAG
GCATGCTTGCAGGTGTGGATCCCCCCCCTCAACGTTCGGGGGGGCCGTGATGCCATCATC
CTCCTCACGTGTGCGGTCCACCCAGAGCTGGTCTTTGAAATCACCAAAATCTTGCTCGCC
ATACTTGGTCC-GCTCATGGTGCTCC---AGGCTGGCCTAACTAGAGTGCCGTACTTCGT
GCGCGCTCAAGGGCTCATCCGTGCATGCATGTTGGTGCGGAAAGTCGCTGGGGGTCATTA
TGTCCAAATGGCTCTCATGAAGCTGGCCGCACTGACGGGTACGTACGTATATGACCATCT
CACGCCGCTACGGGACTGGGCCCACGCGGGCCTACGAGACCTTGTAGTGGCGGTTGAGCC
CGTCATCTTCTCTGACATGGAGACCAAGATTATCACCTGGGGGGCAGACACCGCAGCGTG
TGGGGACATCATCTTGGGCCTACCCGTCTCCGCCCGAAGGGGGAGGGAGATTCTTCTGGG
ACCGGCCGACAGTTTTGGAGAGCAGGGGTGGCGACTCCTTGCGCCCATCACGGCCTATTC
CCAGCAGACACGGGGCTTACTTGGCTGCATCATTACCAGTCTCACAGGTCGGGACAAGA-
--ACCAGGTCGAGGGGGAGGTTCAGGTGGTTTCCACCGCAACGCAATCTTTCTTGGCGAC
CTGCGTCAACGGCGTGTGCTGGACTGTCTACCATGGTGCCGGCTCAAAGACCCTAGCCGG
CCCAAAGGGGCCGATCACCCAAATGTACACCAATGTAGATCAGGACCTCGTCGGCTGGCC
GGCGCCCCCCGGGGCGCGCTCCTTGACACCGTGCACCTGCGGCAGCTCGGACCTTTATTT
GGTCACGAGACATGCTGATGTCATCCCGGTGCGCCGGCGGGGCGACAGCAGGGGGAGTCT
ACTTTCCCCCAGGCCCATCTCCTACTTGAAGGGCTCCTCGGGCGGTCCGCTGCTCTGCCC
CTCGGGGCACGCTGTGGGCATCTTCCGGGCTGCTGTGTGCACCCGGGGGGTTGCGAAGGC
GGTGGACTTTGTACCCGTTGAGTCTATGGAAACTACTATGCGGTCTCCGGTCTTCACGGA
CAATTCGTCCCCCCCGGCCGTACCGCAGACATTCCAAGTGGCCCATATACACGCCCCCAC
TGGCAGCGGCAAGAGCACCAAGGTGCCGGCTGCATATGCAGCCCAAGGGTACAAGGTACT
CGTCCTGAACCCGTCCGTCGCCGCCACCTTAGGTTTCGGGGCGTACATGTCCAAGGCACA
TGGTGTCGACCCTAACATCAGGACTGGAGTAAGGACCATCACCACGGGCGCCCCCATCAC
GTATTCCACCTACGGCAAGTTCCTTGCCGACGGTGGTTGCTCTGGGGGCGCCTATGACAT
CATAATATGTGATGAGTGCCACTCAACTGACTCGACTTCCATCTTGGGCATTGGCACGGT
CCTGGACCAAGCGGAGACGGCTGGAGCGCGGCTCGTCGTGCTCGCTACCGCTACCCCTCC
GGGATCGGTCACCGTGCCACATCCCAACATTGAGGAGGTGGCCTTGTCCAACACTGGAGA
GATCCCCTTCTATGGCAAAGCCATCCCCCTCGAGGCCATCAAGGGGGGGAGGCATCTCAT
TTTCTGCCATTCCAAGAAGAAATGTGATGAACTCGCCGCAAAGCTGTCGGGCCTCGGAGT
CAATGCTGTAGCGTATTACCGGGGTCTTGATGTGTCCGTCATACCGACCAGCGGAGACGT
CGTTGTCGTGGCAACAGACGCTCTAATGACGGGCTACACCGGTGACTTTGACTCAGTGAT
CGACTGTAATACATGTGTCACCCAGACAGTCGATTTCAGCTTGGACCCTAC---------
------------------------------------------------------------
----------------------------TTTCACCATTGAGACGACGACCGTGCCCCAAG
ACGCGGTGTCGCGCTCACAGCGGCGAGGCAGGACTGGTAGGGGCAGGAGGGGCACCTACA
GGTTTGTGACTCCAGGAGAGCGGCCTTCGGGCATGTTGGATTCTTCGGTCCT--------
-----------------------------GTGTGAGTGCTATGACGCGGGCTGTGCTTGG
TATGAACTCACGCCCGCCGAGACCTCGGTTAGGTTGCGGGCTTACCTAAATACACCAGGG
TTGCCCGTCTGCCAGGACCATTTGGAGTTCTGGGAGAGTGTCTTCACAGGCCTCACCCAC
ATAGATGCCCATTTCTTGTCCCAGACTAAACAGGCAGGAGACAACTTCCCCTACCTGGTG
GCATACCAGGCCACAGTGTGCGCCAGGGCTCAGGCTCCACCTCCATCGTGGGATCAAATG
TGGAAGTGTCTCATACGGCTAAAACCTACGCTGCACGGGCCAACACCCCTGTTGTATAGG
CTAGGAGCCGTCCAAAACGAGGTCACCCTCACACACCCCATAACCAAATACATCATGGCA
TGCATGTCGGCTGACCTGGAGGTCGTCACGAGCACCTGGGTGCTAGTGGGCGGGGTCCTC
GCAGCTCTGGCCGCGTATTGCCTGACAACAGGCAGCGTGGTCATTGTGGGCAGGAT-CAT
CTTGTCCGGGAAGCCGGCCATCATTCCCGACAGGGAAGTTCTCTACCAGGAGTTCGATGA
AATGGAAGAGTGCGCCTCACACCTCCCTTACATCGAACAGGGAATGCAGCTCGCCGAGCA
ATTCAAGCAGAAGGCGCTCGGGTTGCTGCAGACGGCCACCAAGCAGGCGGAGGCTGCTGC
TCCCGTGGTGGAGTCCAAGTGGCGAGCCCTTGAGACCTTCTGGGCGAAGCACATGTGGAA
TTTCATCAGCGGGATACAGTACTTAGCAGGCTTGTCCACTCTGCCTGGGAACCCCGCGAT
AGCATCACTGATGGCATTCACAGCCTCTATCACCAGCCCGCT-CACCACCCAACATACCC
TCCTGTTCAACATCTTGGGGGGATGGGTGGCCGCCCAACTCGCTCCCCCCAGCGCTGCTT
CAGCTTTCGTGGGCGCCGGCATCGCCGGCGCGGCTGTTGGCAGCATAGGCCTTGGGAAGG
TGCTTGTGGACATCCTGGCGGGTTATGGAGCAGGGGTGGCAGGCGCACTTGTGGCCTTTA
AGATCATGAGTGGCGAGACGCCCTCCACTGAGGACCTGGTCAACTTACTCCCTGCCATCC
TCTCCCCTGGAGCCCTGGTCGTCGGGGTCGTGTGCGCAGCAATACTGCGTCGACACGTGG
GCCCGGGAGAGGGGGCTGTGCAGTGGATGAACCGGCTGATAGCGTTCGCTTCGCGGGGTA
ACCACGTATCCCCCACGCACTATGTGCCTGAGAGCGACGCCGCAGCGCGTGTCACTCAGA
TCCTCTCCAGCCTTACCATCACCCAGCTGTTGAAGAGGCTCCACCAGTGGATCAATGAGG
ACTGCTCCACGCCATGCTCCGGCTCGTGGCTCAGGGATGTTTGGGACTGGATATGCACGG
TGTTGGTTGATTTCAAGACCTGGCTCCAGTCCAAGGTCCTGCCGCGGTTACCGGGAGTCC
CTTTCCTCTCATGCCAACGTGGGTACAAGGGAGTCTGGCGCGGAGACGGCATCATGCAAA
CCACTTGCCCATGTGGGGCACAGATTGCCGGACATGTCAAAAACGGTTCCATGAGAATCG
TCGGGCCTAGAACCTGCAGCAACACGTGGCATGGAACATTCCCCATCAACGCATACACCA
CGGGCCCCTGCACACCCTCCCCGGCGCCAAACTATTCCAGGGCGT--TGTGGCGGGTGGC
TGCTGAGGAGTACGTGGAGATTACGCGGGTGGGGGATTTCCACTACGTGACGGGCATGAC
CACTGACAACATAAAATGCCCATGCCAGGTCCCGGCCCCCGAATTCTTCACAGAACTAGA
CGGGGTGCGGCTGCACAGGTACGCTCCGGCGTGCAAACCTCTCCTACGGGATGAGGTCAC
ATTCCAGGTCGGGCTCAACCAATACGTGGTTGGGTCACAGCTTCCATGTGAGCCCGAACC
GGACGTAACAGTGCTTACTTCCATGCTCACCGACCCCTCCCACATTACAGCAGAGACGGC
TAAGCGTAGGCTGGCCAGGGGGTCC------CCCCCCTCTTTGGCCAGCTCTTCAGCTAG
TCAGTTGTCTGCGCCTTCCCTGAAGGCGACATGCACCACCCGTCAAGACTCCCCAGACGC
TGACCTCATCGAGGCCAACCTCCTGTGGCGGCAGGAGATGGGCGGGAACATCACCCGTGT
GGAGTCAGAGAATAAGGTGGTAATCCTGGACTCTTTTGAACCGCTTCGGGCGGAGGAGGA
TGAGAGGGAAGTATCCGTTGCGGCGGAGATCCTGCGGAAATCCAGGAAGTTCCCCCCGGC
GCTGCCCGTAT--------------------------------------GGGCACGCCCG
GATTACAACCCTCCACTCATAGAGTCTTGGAAGGACCCAGACTACGTCCCTCCGGTGGTA
CACGGGTGCCCATTGCCACCTACTAAGGCCCCTCCAATACCACCTCCACGGAGGAAGAGG
ACGGTTGTCCTGACAGAATCCACCGTGTCTTCTGCCTTGGCGGAGCTTGCTACAAAGACC
TTTGG-CAGCTC------------CGGATCGTCGG--CCGTCGACAGCGGCACA-GCGAC
CGCCCCTCCTGATCAGCCCTCCGATGACGGAGACGCAGGATCCGACGTTGAGTCGTACTC
CTCCATGCCCCCCCTTGAGGGAGAGCCGGGGGACCCCGATCT------------------
----------------CAGCGA---------------------------CGGGTCTTGGT
CTACTGTGAGCGAGGAGGCTAGTGAGGATGTCGTCTGTTGCTCAATGTCCTACACATGGA
CGGGCGCCCTGATCACACCATGCGCTGCGGAGGAAAGCAAGCTGCCCATCAACGCGTTGA
GCAACTCTTTGCTCCGCCACCACAACATGGTCTATGCCACAACATCCCGCAGCGCAAGCC
AACGGCAGAAGAAGGTCACCTTTGACAGACTGCAAGTCCTGGACGACCACTACCGGGACG
TGCTCAAGGAGATGAAGGCGAAGGCGTCCACAGTTAAGGCCAAACTTCTATCTGTAGAAG
AAGCCTGTAAGCTGACGCCCCCACATTCGGCCAGATCCAAATTTGGCTATGGGGCAAAGG
ACGTCCGGAACCTATCCAGCAGGGCCGTTAACCACATCCGCTCCGTGTGGAAGGACCTGC
TGGAAGACACTCAGACACCAATTGACACCACCGTCATGGCAAAAAATGAGGTTTTCTGTG
TCCAACCAGAGAAAGGAGGCCGCAAGCCAGCTCGCCTCATCGTGTTCCCAGATTTGGGGG
TTCGTGTGTGCGAGAAAATGGCCCTTTATGACGTGGTCTCCACCCTTCCTCAGGCCGTGA
TGGGCGCCTCATACGGATTCCAGTACTCTCCTGGACAGCGGGTCGAGTTCCTGGTGAATG
CCTGGAAATCAAAGAGATGCCCTATGGGCTTCGCATATGACACCCGCTGTTTTGACTCAA
CGGTCACTGAGAGTGACATCCGTGTTGAGGAGTCAATATACCAATGTTGTGACTTGGCCC
CCGAAGCCAGACAGGCCATAAGGTCGCTCACAGAGCGGCTTTATGTCGGGGGTCCCCTGA
CTAATTCAAAAGGGCAGAACTGCGGTTATCGCCGGTGCCGCGCAAGCGGTGTGCTGACGA
CTAGCTGCGGTAATACCCTCACATGTTACTTGAAGGCCACTGCGGCCTGTCGAGCTGCAA
AGCTCCAGGACTGCACGATGCTCGTGTGCGGAGACGACCTTGTCGTTATCTGTGAAAGCG
CGGGAACCCAGGAGGACGCGGCAAGCCTACGAGTCTTCACGGAGGCTATGACTAGGTACT
CTGCCCCCCCCGGGGACCCGCCCCAGCCAGAATACGACTTGGAGCTGATAACATCATGCT
CCTCCAACGTGTCGGTCGCGCACGATGCGTCTGGCAAGCGGGTGTATTACCTCACCCGCG
ACCCCACCACCCCCCTTGCGCGGGCTGCGTGGGAGACAGCTAGACACACTCCAGTTAACT
CCTGGCTAGGCAACATCATCATGTATGCGCCCACCTTATGGGCAAGGATGATTCTGATGA
CTCACTTCTTCTCCATCCTTCTAGCTCAGGAGCAACTTGAAAAAGCCCTGGATTGTCAGA
TCTACGGGGCCACTTACTCCATTGAGCCACTTGACCTACCTCAAATCATTCAGCGACTCC
ACGGTCTTAGCGCATTTTCACTCCATAGTTACTCTCCAGGTGAGATCAATAGGGTGGCTT
CATGCCTCAGGAAACTTGGGGTACCACCCTTGCGAGTCTGGAGACATCGGGC--------
CAGAAGTGTCCGCGCTAAGCTACTGTCCCAGGGGGGGAGGGCCGCCACTTGTGGCAAATA
CCTCTTCAACTGGGCAGTAAGGACCAAGCTTAAACTCACTCCAATTCCGGCTGCGTC-CC
AGTTGGACTTGTCCGGCTGGTTCATTGCTGGTTACAGCGGGGGAGACATAT-ATCACAGC
CTG-TCTCGTGCCCGACCCCGCTGGTTCATGTGGTAGCCTACTCCTACTTTCTGTAGGGG
TAGGCATTTACCTGCTCCCCAACCGAT-GAACGGGG------AGCTAAACACTCCAGGCC
AATAGGCCATCCTG---------------------------TTTTTTTGTTTTTTCTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC-----------------TTT
TTTTCCCTTTTTTTTATTTTATTTTCTTTTGGTGGCTCCATCTTAGCCCTAGTCACGAGC
TAGCTGTGAAAGGTCCGTGAGC-CGCATGACT-GCAGAGAGTGCTGATACTGGCCTCTCT
GCAGATCATGTTT
> 6:1-9549 + hcv-half2.fasta
------------------------------------------------------------
-----------------------CCATGGCGTTAGTATGAGTGTCGTGCAGCCTCCAGGA
CCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCA
GGACGACCGGGTCCTTTCTTGGATCAA-CCCGCTCAATGCCTGGAGATTTGGGCGTGCCC
CCGCGAGACTGCTAGCCGAGTAGTGTTGGGTCGCGAAAGGCCTTGTGGTACTGCCTGATA
GGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCATCATGAGCACAAATCCTAA
ACCTCAAAGAAAAACCAAACGTAACACCAACCGCCGCCCACAGGACGTCAAGTTCCCGGG
CGGTGGTCAGATCGTTGGTGGAGTTTACCTGTTGCCGCCCAGGGGCCCCAGGTTGGGTGT
GCGCGCGACTAGGAAGACTTCCGAGCGGTCGCAACCTCGTGGAAGGCGACAACCTATCCC
CAAGGCTCGCCAGCCCGAGGGCAGGGCCTGGGCTCAGCCCGGGTATCCTTGGCCCCTCTA
TGGCAATGAGGGCCTGGGGTGGGCAGGATGGCTCCTGTCACCCCGTGGCTCTCGGCCTAG
TTGGGGCCCCACGGACCCCCGGCGTAGGTCGCGTAATTTGGGTAAGGTCATCGATACCCT
CACATGCGGCTTCGCCGACCTCATGGGGTACATTCCGCTCGTCGGCGCCCCCCTAGGGGG
CGCTGCCAAGGCCCTGGCACATGGTGTCCGGGTTCTGGAGGACGGCGTGAACTATGCAAC
AGGGAATTTGCCCGGTTGCTCTTTCTCTATCTTCCTCTTGGCTTTGCTGTCCTGTTTGAC
CATCCCAGCTTCCGCTTATGAAGTGCGCAACGTGTCCGGGATATATCATGTCACGAACGA
CTGCTCCAACTCAAGCATTGTGTATGAGGCGGC----GGACGTGATCATGCATGCCCCCG
GGTGCGTGCCCTGCGTTCGGGAGAACAACTCCTCCCGCTGCTGGGTAGCGCTCACTCCCA
CGCTCGCGGCCAGGAACTCCAGCGTCCCCACCACGACAATACGACGTCACGTCGACTTGC
TCGTTGGGACGGCTGCTTTCTGCTCCGCTATGTACGTGGGGGATCTCTGCGGATCTGTTT
TCCTCATCTCCCAGCTGTTCACCTTCTCGCCTCGCCGGCATGAGACAGTACAGAGCTGCA
ATTGCTCACTCTATCCCGGCCACGTAACAGGTCATCGCATGGCTTGGGATATGATGATGA
ACTGGTCGCCCACAGCAGCCCTCGTGGTGTCGCAGTTACTCCGGATCCCACAAGCTGTCA
TGGACATGGTGGCGGGGGCCCACTGGGGAGTCCTGGCGGGCCTTGCCTACTACTCCATGG
TGGGGAACTGGGCTAAGGTTTTGATTGTGATGCTACTCTTCGCCGGCGTTGACGGAGG--
-CACCCACGTGACGGGGGGCGCGCAAGGCCGCAGCGCCTTCCGGCTCACGTCCTTCTTTA
CATCTGGGGCGTCTCAGAAAATCCAGCTTATAAACACCAATGGCAGTTGGCACATCAACA
GGACTGCCCTGAACTGCAATGACTCCCTCCACACTGGGTTCCTTGCCGCGCTGTTCTACA
CACACAGGTTCAACGCGTCCGGATGCCCGGAGCGCCTGGCCAGCTGCCGCTCCATTGACA
CGTTCGATCAGGGATGGGGTCCCAT------CACTTATGCTCAACCTAGCAGCTCGGACC
AGAGGCCTTACTGCTGGCACTACGCACCTCGACCGTGCGGTATCGTACCCGCGTCGCAGG
TGTGTGGTCCAGTGTATTGTTTCACCCCAAGCCCGGTTGTGGTGGGGACGACCGATCGTT
TCGGTGTCCCTACGTATAGCTGGGGGGAGAATGAGACAGACGTGCTGCTCCTCAACAACA
CGCGGCCACCGCAAGGCAACTGGTTCGGCTGTACATGGATGAATAGCACTGGGTTCACCA
AGACGTGTGGGGGCCCCCCGTGTAACATCGGGGGGGCCGGCAA---CAACAC---CTTAA
CATGCCCCACGGACTGCTTCCGAAAGCACCCCGAGGCCACTTACACAAAATGTGGTTCGG
GCCCTTGGTTGACACCTAGGTGCATGGTTGACTACCCATACAGGCTCTGGCATTACCCCT
GCACTGTCAACTTTACCATCTTCAAGGTTAGGATGTATGTGGGGGGCGTGGAGCACAGGC
TCAATGCCGCATGCAACTGGACTCGAGGAGAGCGTTGCAACTTGGAGGACAGGGATAGAT
CAGAGCTCAGTCCGCTGCTGCTGTCTACGACAGAGTGGCAGATACTGCCCTGTTCCTTCA
CCACCCTACCGGCTCTGTCCACTGGTTTAATCCATCTCCACCAGAATGTCGTGGACGTGC
AATACCTGTACGGTGTAGGGTCAGCGGTTGTCTCCC---TTGTAATCAAATGGGAGTATG
TCCTGCTGCTTTTCCTCCTCCTGGCGGACGCGCGCGTCTGTGCCTGTTTGTGGATGATGC
TACTGATAGCCCAGGCTGAGGCCGCCTTAGAGAACCTGGTGGTCCTCAATGCAGCG----
--TCCGTGGCCGGAGCGCATGGCATTCTCTCCTTCCTGGTGTTCTTCTGTGCTGCCTGGT
ACATCAAAGGCAAGCTGGTCCCTGGGGCGGCATATGCTTTCTATGGCGTATGGCCGTTAC
TGCTGCTCCTGCTGGCGTTACCACCACGAGCTTACGCC----ATGGACCGAGAGATGGCT
GCATCATGCGGAGGCGGGGTTTTTGTAGGTCTG---GTACTTTTGACCTTGTCACCATAC
TACAAAGTGTTCCTCGCCAAGCTCATATGGTGGTTACAATATTTTATCACCAGGGCTGAG
GCGCACTTGCAAGTGTGGGTCCCCCCCCTCAACGTTCGGGGAGGCCGTGATGCCATCATC
CTCCTCACGTGTGCGGCCCACCCAGAGCTAATTTTTGACATCACCAAACTCCTGCTCGCC
ATATTCGGTCC-GCTCATGGTGCTCC---AGGCTGGCATAACTAGAGTGCCGTACTTCGT
ACGCGCTCAAGGGCTCATCCGTGCATGCATGTTAGTGCGGAAAGTTGCTGGGGGCCATTA
TGTTCAAATGGCCTTCATGAAGCTGGCCGCGCTGACGGGTACGTACGTTTATGACCATCT
TACTCCACTGCGGGACTGGGCCCACACGGGCCTACGGGACCTTGCAGTGGCAGTAGAGCC
CGTCGTCTTTTCTGACATGGAGACCAAGATCATCACGTGGGGGGCGGACACCGCGGCGTG
TGGGGACATCATCTCGGGTCTGCCCGTCTCCGCCCGAAGGGGAAGGGAGATACTTCTGGG
ACCTGCTGACAGTCTTGAAGGGCAGGGGTGGCGACTCCTCGCGCCCATCACGGCCTACTC
TCAACAGACGCGAGGCCTACTTGGTTGTATCATCACTAGCCTCACAGGCCGGGACAAGA-
--ACCAAGTCGAGGGGGAGGTTCAAGTGGTTTCCACCGCAACACAATCTTTCCTGGCGAC
CTGCGTCAACGGCGTGTGTTGGACTGTCTATCATGGCGCCGGCTCAAAGACCCTAGCTGG
CCCAAAAGGCCCAATCACCCAAATGTACACCAATGTAGACCAGGACCTCGTCGGCTGGCA
GGCGCCCCCCGGGGCGCGTTCCTTGACACCATGCACCTGCGGTAGCTCGGACCTTTACTT
GGTCACGAGACACGCTGACGTCATTCCGGTGCGCCGGCGGGGCGACAGCAGGGGGAGTCT
GCTCTCCCCCAGGCCCGTCTCCTACCTGAAGGGCTCTTCGGGTGGTCCACTGCTCTGCCC
TTCGGGGCACGTTGTGGGCATCTTCCGGGCTGCCGTGTGCACCCGGGGGGTTGCGAAGGC
GGTGGACTTCGTGCCCGTCGAGGCTATGGAGACCACTATGCGGTCGCCGGTCTTCACAGA
CAACTCATCCCCCCCGGCCGTGCCGCAGACATTCCAAGTAGCCCATCTACACGCCCCCAC
TGGCAGCGGCAAGAGCACTAAGGTGCCGGCTGCATATGCAGCCCAAGGGTACAAGGTACT
TGTCCTGAACCCGTCCGTTGCCGCCACTTTAGGCTTTGGGGCGTATATGTCTAAGGCACA
TGGTACCGACCCTAACATCAGAACTGGGATAAGGACTATCACCACGGGCGCCCCCATCAC
GTACTCCACCTATGGCAAGTTCCTTGCCGACGGCGGTTGCTCCGGGGGCGCCTATGACAT
CATAATATGTGATGAGTGCCACTCAACTGACTCGACCACCATCTTGGGCATCGGCACAGT
CCTGGACCAAGCGGAGACGGCTGGAGCGCGGCTTGTCGTGCTCGCCACCGCTACGCCTCC
AGGGTCAGTCACCGTGCCACACCCCAATATCGAGGAGGTAGCCCTGTCCAACACTGGAGA
GATCCCCTTCTATGGCAAAGCCATCCCCATCGAGGCTATCAAGGGGGGAAGGCATCTCAT
CTTCTGCCATTCAAAAAAGAAGTGTGACGAGCTCGCCGCAAAGCTGTCATCCCTCGGAAT
CAACGCCGTGGCGTACTACCGAGGTCTTGATGTGTCCGTCATACCGACCAGCGGAAACGT
TGTTGTCGTGGCGACAGACGCTCTTATGACGGGCTACACCGGCGACTTTGACTCAGTGAT
CGACTGTAACACATGTGTCACTCAGACAGTCGATTTCAGTCTGGATCCCAC---------
------------------------------------------------------------
----------------------------CTTCACCATCGAGACGACGACCGTCCCCCAAG
ACGCAGTGTCACGCACGCAGCGACGGGGTAGGACTGGCAGGGGTAGGAGAGGCATCTACA
GGTTTGTGACTCCAGGAGAGCGGCCCTCGGGCATGTTCGATTCCTCGGTCCT--------
-----------------------------GTGTGAGTGTTATGACGCGGGCTGCGCTTGG
TATGAGCTCACGCCCGCTGAGACCTCGGTTAGGTTGCGGGCTTACCTAAATACACCAGGG
TTGCCCGTCTGCCAGGACCATCTGGAGTTCTGGGAGAGCGTCTTCACAGGCCTCACCCAT
ATAGATGCCCACTTCTTGTCCCAGACTAAACAGGCAGGAGATAACTTCCCCTACCTGGTA
GCATACCAAGCCACAGTGTGCGCCAGGGCRCAGGCTCCACCTCCATCGTGGGACCAAATG
TGGAAGTGTCTCATACGGCTAAAGCCTACGTTGCACGGGCCAACGCCCCTGCTGTATAGG
CTAGGAGCCGTCCAAAATGAGGTCACCCTCACACACCCTGTAACCAAATACATCATGGCA
TGCATGTCGGCTGACCTGGAGGTCGTCACTAGTACCTGGGTGCTAGTAGGCGGGGTCCTT
GCAGCTCTGGCCGCGTATTGCCTGACAACAGGCAGCGTGGTCATAGTGGGTAGGAT-CAT
CTTGTCCGGGAGGCCGGCTGTCATTCCCGATAGGGAAGTCCTCTACCGAGAGTTCGATGA
AATGGAAGAGTGCGCCTCACACCTCCCTTACATCGAACAGGGAATGCAGCTCGCCGAGCA
ATTCAAGCAGAAGGCGCTCGGGTTGTTGCAAACAGCTACCAAGCAAGCGGAGGCTGCTGC
TCCCGTGGTGGAGTCCAAATGGCGAGCCCTCGAGGCCTTCTGGGCGAAGCACATGTGGAA
CTTCATCAGCGGGATACAGTACTTAGCAGGCTTGTCCACTCTGCCTGGGAACCCCGCGAT
AGCATCACTGATGGCATTCACAGCCTCTGTCACCAGCCCGCT-CACCACCCAAAGTACCC
TCCTGTTTAACATCTTGGGGGGATGGGTGGCTGCCCAGCTCGCTCCTCCCAGCGCTGCTT
CAGCTTTCGTGGGCGCCGGCATTGCCGGCGCGGCCGTTGGCAGCATAGGCCTTGGGAAGG
TGCTTGTGGACATCTTGGCGGGTTATGGGGCAGGGGTGGCCGGCGCACTCGTGGCCTTTA
AGGTCATGAGCGGCGAGATGCCTTCCACTGAGGACCTGGTCAATCTGCTCCCTGCCATCC
TCTCTCCTGGCGCCCTGGTCGTCGGGGTCGTGTGCGCAGCAATACTGCGGCGGCACGTGG
GCCCAGGAGAGGGGGCTGTGCAGTGGATGAACCGGCTGATAGCGTTCGCCTCGCGGGGTA
ACCACGTCTCCCCCACGCACTATGTGCCTGAGAGCGACGCCGCAGCGCGTGTCACCCAGA
TCCTCTCCAGCCTTACCATCACTCAGCTGCTGAAGAGGCTCCACCAGTGGATTAATGAGG
ACTGCTCCACACCCTGCTCCGGCTCGTGGCTAAGGGATGTTTGGGACTGGATATGCACGG
TGTTGATTGACTTCAAGACCTGGCTCCAGTCCAAGCTCCTGCCGCGGCTACCGGGAGTCC
CCTTCTTCTCATGCCAACGTGGGTACAAGGGAGTCTGGCGGGGGGACGGCATCATGCATA
CCACCTGCCCATGTGGAGCGCAGATTGCCGGACATGTCAAAAACGGTTCCATGAGGATCG
TTGGGCCTAAGACCTGCAGCAACACGTGGCATGGAACATTCCCCATCAACGCATACACCA
CGGGCCCCTGCACACCCTCCCCGGCGCCAAACTATTCTAGGGCGC--TATGGCGAGTGGC
TGCTGAGGAGTACGTGGAGGTCACGCGGGTGGGGGATTACCATTACATCACGGGCATGAC
CACTGACAACATAAAGTGCCCATGCCAGGTTCCGGCCCCTGAATTCTTCACGGAGGTGGA
TGGAGTGCGGCTGCACAGGTACGCTCCGGCGTGCAAACCCCTCCTACGGGAGGAGGCCGT
ATTCCAGGTCGGGCTCAACCAATACCTGGTTGGATCACAGCTCCCATGTGAGCCCGAACC
AGATGTAGCAGTGCTCACTTCCATGCTAACCGACCCCTCCCACATTACAGCAGAAACGGC
CAAGCGTAGGCTGGCCAGGGGGTCT------CCCCCCTCCATGGCCAGCTCTTCAGCTAG
CCAGTTGTCTGCGCCTTCCTTGAAGGCGGCATGCACTACCCATCATCACTCCCCGGACCT
TGACCTCATCGAGGCCAACCTCCTGTGGCGGCAGGAGATGGGCGGGAACATCACCCGTGT
GGAGTCAGAAAATAAGGTAGTAATTCTGGACTCTTTCGATCCGCTCCGGGCGGAGGAGGA
TGAGAGGGAAGTGTCCGTTCCGGCGGAGATCCTGCGAAAATCCAGGAATTTTCCCCCAGC
GATGCCCATAT--------------------------------------GGGCACGCCCG
GATTACAACCCTCCACTGCTAGAGTCCTGGAAAGACCCGGACTACGTCCCTCCAGTGGTA
CACGGGTGCCCATTACCACCTACCAAGGCCCCCCCAATACCACCTCCACGGAGAAAGAGG
ACGGTTGTCCTGACAGAGTCCACTGTGTCTTCTGCCTTGGCGGAGCTTGCTACTAAGACC
TTTGG-CAGCTC------------CGAATCGTCAG--CCGCCGACAGCGGCACG-GCGAC
CGCCCCTCCTGACCAGGCCTCTGACGACGGCGACAAAGAATCCGACGTTGAGTCGTACTC
CTCCATGCCCCCCCTTGAGGGAGAGCCGGGGGACCCCGATCT------------------
----------------CAGCGA---------------------------CGGGTCTTGGT
CTACCGTGAGTGAGGAGGCCACTGAGGACGTCGTCTGCTGCTCAATGTCCTACACATGGA
CAGGCGCCCTGATCACGCCATGCGCTGCGGAGGAAAGCAAGCTGCCCATCAACGCGCTGA
GCAACTCTCTGCTGCGTCACCACAACATGGTGTATGCCACAACATCCCGCAGCGCAAGCC
TGCGGCAGAAGAAAGTCACCTTTGACAGACTGCAAGTCCTGGACGATCACTACCGGGACG
TGCTCAAGGAGATGAAGGCGAAGGCGTCCACAGTTAAGGCTAAACTTCTATCTGTAGAAG
AAGCCTGCAAGCTGACGCCCCCACATTCGGCCAAATCCAAATTTGGCTATGGGGCAAAGG
ACGTCCGGAACCTATCCAGCAAGGCCATTAACCACATCCGCTCCGTGTGGAAGGACTTGC
TGGAAGACACTGAAACACCAATTGACACCACCATCATGGCAAAAAATGAGGTTTTCTGCG
TCCAGCCAGAAAAAGGAGGCCGCAAACCAGCTCGCCTTATCGTATTCCCAGACCTGGGAG
TTCGTGTATGCGAGAAGATGGCCCTTTATGACGTAGTTTCCACTCTTCCTCAGGCCGTGA
TGGGCTCCTCATACGGATTCCAGTACTCTCCTGGACAGCGGGTCGAGTTCCTGGTGAAGA
CCTGGAAATCAAAGAAGTGCCCTATGGGCTTCTCATATGACACCCGTTGTTTTGACTCAA
CGGTCACTGAGAATGACATCCGTGTTGAGGAGTCAATTTACCAATGTTGTGACTTGGCCC
CCGAAGCCAGACAGGCCATAAGGTCGCTCACAGAGCGGCTTTATATCGGGGGCCCCATGA
CCAATTCCAAAGGGCAGAACTGCGGTTATCGCCGGTGCCGCGCGAGCGGCGTGCTGACGA
CTAGCTGCGGTAATACCCTCACATGTTACTTGAAGGCCACTGCAGCCTGTCGAGCTGCGA
AGCTCCAGGACTGCACGATGCTCGTGAACGGAGACGACCTTGTCGTTATCTGTGAGAGCG
CGGGGACCCAAGAGGATGCGGCGAACCTACGAGTCTTCACGGAGGCTATGACTAGGTACT
CTGCCCCCCCCGGGGACCCGCCCCAACCAGAATACGACTTGGAGCTGATAACATCATGTT
CCTCCAATGTGTCGGTCGCGCACGATGCATCTGGCAAAAGGGTGTACTACCTCACCCGCG
ACCCCACCACCCCCCTTTCGCGGGCTGCGTGGGAGACAGCTAGACACACTCCAGTCAACT
CCTGGCTAGGCAACATCATCATGTATGCGCCCACCTTATGGGCAAGGATGATTCTGATGA
CCCACTTCTTCTCCATCCTTCTAGCCCAGGAGCAACTTGAAAAAGCCCTGGATTGTCAAA
TCTACGGGGCCTGTTACTCCATTGAGCCACTTGACCTACCTCAGATCATTGAACGACTCC
ATGGTCTTAGCGCATTTTCACTCCACAGTTACTCTCCAGGTGAAATCAATAGGGTGGCTT
CATGCCTCAGGAAGCTTGGGGTACCACCCTTGCGAGTCTGGAGACATCGGGC--------
CAGAAGTGTCCGCGCTAAGCTACTGTCCCAGGGGGGGAGGGCTGCCACTTGTGGTAAGTA
CCTCTTCAACTGGGCGGTAAGGACCAAGCTCAAACTCACTCCAATCCCGGCCGCGTC-CC
AGCTGGACTTGTCCGGCTGGTTCGTTGCTGGTTACAGCGGGGGAGACATAT-ATCACAGC
CTG-TCTCGTGCCCGACCCCGCTGGTTCATGTTGT-GCCTACTCCTACTTTCCGTAGGGG
TAGGCATCTACCTGCTCCCCAACCGATAGAACGGGG------AGCTAAACACTCCAGGCC
AATAGGCCATCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-----------------TTT
TTTTTTCCTCTTTTTTTCCTTTTCTTCTTTGGTGGCTCCATCTTAGCCCTAGTCACG-GC
TAGCTGTGAAAGGTCCGTGAGCACGCATGACT-GCAGAGAGTGCTGATACTGGCCTCTCT
GCAGGTCATGT--
> 7:1-9345 + hcv-half2.fasta
--------------------------------ATAGATCACTCCCCTGTGAGGAACTACT
GTCTTCACGCAGAAAGCGTCTAGCCATGGCGTTAGTATGAGTGTCGTGCAGCCTCCAGGT
CCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCA
GGACGACCGGGTCCTTTCTTGGATTAA-CCCGCTCAATGCCTGGAGATTTGGGCGTGCCC
CCGCGAGACTGCTAGCCGAGTAGTGTTGGGTCGCGAAAGGCCTTGTGGTACTGCCTGATA
GGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCACCATGAGCACAAATCCTAA
ACCTCAAAGAAAAACCAAACGTAACACCAACCGCCGCCCACAGGACGTCAAGTTCCCGGG
CGGTGGCCAGATCGTTGGTGGAGTTTACCTGTTGCCGCGCAGGGGCCCCAGGTTGGGTGT
GCGCGCGACTAGGAAGACTTCCGAGCGGTCACAACCTCGTGGCAGGCGACAACCTATCCC
CAAGGCTCGCCAGCCCGAGGGCAGGGCCTGGGCTCAGCCCGGGTACCCTTGGCCCCTCTA
TGGCAACGAGGGCCTGGGGTGGGCAGGATGGCTCCTGTCACCCCGTGGCTCTCGGCCTAG
TTGGGGCCCCACAGACCCCCGGCGTAGGTCGCGTAATTTGGGTAAGGTCATCGATACCCT
TACATGCGGCTTCGCCGACCTCATGGGGTACATCCCGCTCGTCGGCGCCCCTCTAGGAGG
CGCTGCCAGGGCCCTGGCGCATGGCGTACGGGTTCTGGAGGACGGCGTGAACTATGCAAC
AGGGAATCTGCCCGGTTGCTCTTTCTCTATCTTCCTTTTGGCTTTGTTGTCTTGTTTGAC
CATCCCAGTTTCCGCTTATGAAGTGCGCAACGTGTCCGACGTGTACCATGTCACGAACGA
CTGCTCCAACTCAAGCATTGTGTATGAGGCAGC----TGACGTGATTATGCACACCCCCG
GGTGCGTGCCCTGCGTCCGGGAGAACAATTCCTCCCGCTGCTGGGTAGCGCTCACTCCCA
CGCTCGCGGCCAGGAACAGCAGCATCCCCACTACGACAATACGACGTCATGTCGATTTGC
TCGTTGGGGCAGCTGCTTTCTGTTCCGCCATGTACGTGGGGGATCTCTGCGGATCTGTTT
TCCTCGTCTCCCAGCTGTTCACCTTCTCGCCTCGCCGGTATGAGACGGTACAAGACTGCA
ATTGCTCAATCTATCCCGGCCACGTATCAGGTCACCGCATGGCTTGGGATATGATGATGA
ACTGGTCACCTACAACAGCCCTAGTAGTATCGCAGCTGCTCCGGATCCCACAAGCCGTCA
TGGATATGGTGACGGGGGCCCACTGGGGAGTCCTAGCGGGCCTTGCCTACTATTCCATGG
TGGGGAACTGGGCTAAGGTTTTGATTGTGATGCTACTGTTTGCCGGCGTTGACGGGGA--
-AACTTATGCGTCGGGGGCGGCGTCAGGCCGCAGCACCATGAGCTTTGCGTCCCTCTTCT
CGTCTGGGTCATCTCAGAACATCCAACTTATAAATACCAACGGCAGCTGGCACATCAACA
GGACTGCCCTGAACTGCAATGAATCCCTCAACACCGGGTTCCTTGCCGCGCTGTTCTACA
CACACAAGTTCAACGCGTCCGGATGCCCAGAGCGTATGGCCAGCTGTCGCCCCATCGACG
AGTTCGCTCAGGGGTGGGGCCCCAT------CACTCATGCCACGCCCCGCGTCTCGGACC
AGAGGCCCTATTGCTGGCACTACGCACCTCAACCGTGTGGTATCGTACCCGCGTTGCAGG
TGTGTGGTCCAGTGTATTGCTTCACCCCAAGCCCCGTCGTGGTGGGGACGACCGATCGTT
CTGGCGCCCCCACGTATAACTGGGGGGAGAACGAGACGGACGTGCTAATCCTCAACAACA
CTCGGCCTCCGCAAGGCAACTGGTTCGGCTGTACATGGATGAACAGCACTGGGTTCACCA
AGACGTGCGGGGGTCCCCCGTGTAACATCGGGGGGGTCGGCAA---CAACAC---CCTGA
CCTGCCCCACGGATTGTTTCCGGAAGCACCCCGAGGCTACTTATGCCAAATGCGGCTCGG
GGCCTTGGTTGACACCCAGATGCATGGTTGACTACCCATACAGGCTTTGGCACTACCCCT
GCACTGTCAACTTTACCATCTTCAAGGTGAGGATGTACGTGGGGGGTGTGGAGCACAGGC
TCAACGCCGCGTGCAATTGGACTCGAGGAGATCGTTGTAACCTGGAAGACAGGGACAGAT
CAGAGCTCAGCCCGCTGCTATTGTCCACAACAGAATGGCAGGTACTGCCCTGTACCTTCA
CCACCCTACCGGCTCTGTCCACTGGTTTGATTCACCTCCACCAGAACATCGTGGACGTGC
AATACCTGTACGGTGTAGGGTCAGCGGTTGTCTCCG---TTGTCATCAGATGGGAGTATG
TCCTGCTGCTTTTCCTCCTCCTGGCAGACGCACGCGTCTGCGCCTGCTTATGGATGATGC
TGCTGATAGCCCAGGCTGAGCCCGCCTTAGAGAACCTGGTGGTCCTCAATGCAGCG----
--TCCCTGGCCGGAGCGCATGGCATTCTCTCCTTCCTTGTGTTCTTCTGTGCTGCCTGGT
ACATCAAGGGCAAGCTGGCCCCCGGGGCGGCGTACGCCTTCTATAGCGTATGGCCGCTGC
TCTTGCTCCTGCTGGCGTTACCACCACGGGCATACGCC----ATGGACCGAGAGATGGCT
GCATCATGCGGGGGCGCGGTTTTCGTAGGCCTG---GCACTCTTGACCTTGTCACCCCAC
TACAAAGTGTTCCTCGCCAAGCTCATATGGTGGTTACAATACCTTATCACCAGGGCCGAG
GCGCACTTGCAAGTGTGGATCCCCCCTCTCAACGTTCGGGGGGGCCGCGATGCCATCATC
CTCCTCACGTGTGCAGTCCACCCAGAGCTAATTTTTGAGATCACCAAAATCTTGCTCGCC
ATATTTGGTCC-GCTCATGGTGCTCC---AAGCCGGCCTAATCAGAGTGCCGTACTTCGT
GCGCGCGCAAGGGCTCGTGCGTGCATGCATGTTGGTGCGGAAAGTTTCTGGGGGCCAATA
TGTCCAAATGGTCCTCATGAAGCTGGCCGCATTAACGGGCACATATGTTTATAACCATCT
TACTCCGCTGCGGGACTGGGCCCATGCGGGCCTGCGAGACCTTGCGGTGGCAGTTGAGCC
CGTCCTCTTCTCTGACATGGAAACCAAAATCATCACCTGGGGGGCAGACACCGCGGCGTG
TGGGGACATCCTCGCGGGATTGCCCGTCTCCGCTCGAAGGGGGAGGGAAATACTCCTAGG
ACCGGCCGACGGGTTTGAAGGGCAAGGATGGCGACTCCTCGCGCCTATCACGGCCTACTC
CCAACAGACGCGGGGCCTACTTGGCTGTATCATCACTAGCCTTACAGGCCGGGACAAGA-
--ACCAGGTCGAGGGGGAAGTTCAGGTGGTTTCCACCGCGACGCAGTCTTTCCTGGCGAC
CTGCGTCAACGGTGTGTGTTGGACTGTCTATCACGGTGCCGGCACGAAGACTCTAGCTGG
CCCAAAAGGTCCAATCACCCAGATGTACACCAATGTAGACCAAGACCTCGTCGGCTGGCA
GGCGCCCCCCGGGGCGCGTTCCATGACACCATGCACCTGCGGCAGCTCGGACCTTTATTT
GGTTACGAGGCACGCTGACGTTATTCCGGTGCGCCGGCGGGGCGACAGCAGAGGGAGCCT
ACTCTCCCCCAGGCCTATCTCCTACCTGAAGGGCTCCTCGGGTGGTCCACTGCTCTGCCC
CTTGGGGCACGTCGTGGGCATCTTCCGAGCCGCTGTGTGCACCCGGGGGGTTGCGAAGGC
GGTGGACTTTGTACCCGTTGAGTCTATGGAGACCACTATGCGGTCTCCGGTCTTCACGGA
CAACTCATCTCCCCCGGCTGTACCGCAGACATTCCAGGTGGCCCACCTACACGCTCCCAC
CGGCAGCGGCAAGAGCACCAAAGTACCGGCTGCATACGCAGCCCAAGGGTACAAGGTACT
TGTCCTGAACCCATCCGTTGCTGCCACCTTAGGTTTTGGGGCGTATATGTCCAAGGCACA
TGGTGTTGACCCTAACATCAGAACTGGGGTAAGGACCATCACCACGGGCGCTCCCATCAC
GTACTCCACCTATGGCAAGTTCCTTGCCGACGGTGGTTGCTCCGGGGGCGCCTACGACAT
CATAATGTGTGATGAGTGCCACTCAACTGACTCAACCTCCATCTTGGGCATTGGCACAGT
CCTGGACCAAGCGGAGACGGCTGGAGCGCGGCTCGTCGTGCTCGCCACCGCTACGCCTCC
GGGATCGGTCACCGTGCCACATCCCAACATCGAGGAGGTGGCCTTGTCCAACACTGGAGA
GATCCCCTTTTATGGTAAAGCCATCCCCATTGAGGTCATCAAGGGGGGGAGGCATCTCAT
TTTCTGCCATTCCAAGAAGAAATGTGACGAGCTCGCCACAAAACTGTCGGCCCTCGGAAT
TAATGCTGTAGCGTACTACCGGGGCCTTGATGTGTCCGTCATCCCGACAAGCGGAAACGT
CGTTGTCGTGGCAACAGACGCTCTAATGACGGGCTACACTGGTGACTTTGACTCAGTGAT
CGACTGCAACACATGTGTCACCCAGACAGTCGACTTCAGCTTGGACCCCAC---------
------------------------------------------------------------
----------------------------TTTCACCATTGAGACGACGACCATGCCGCAAG
ACGCGGTGTCGCGCTCGCAGCGGCGAGGCAGGACTGGTAGGGGCAGAACGGGCATATACA
GATTTGTGACTCCAGGAGAGCGGCCCTCGGGCATGTTCGATTCTTCGGTCCT--------
-----------------------------GTGTGAGTGCTATGACGCGGGCTGTGCTTGG
TATGAGCTCACGCCCGCCGAGACCTCGGTCAGGTTACGGGCTTACCTAAATACACCAGGG
TTGCCCGTCTGCCAGGATCACCTGGAGTTCTGGGAGAGCGTCTTCACGGGCCTCACCCAC
ATAGATGCTCATTTCCTGTCCCAGACTAAACAGGCAGGGGAGAACCTCCCCTACCTGGTA
GCATACCAGGCCACAGTTTGCGCCAGGGCCCAAGCCCCCCCTCCATCGTGGGATCAAATG
TGGAAGTGTCTCGTACGGCTAAAGCCTACGCTGCAGGGGCCAACGCCCCTGTTGTACAGG
CTGGGAGCCGTCCAAAACGAGGTCACCCTCACACACCCCATAACCAAATACATCATGACA
TGCATGGCGGCTGACCTAGAGGTCGTCACGAGCACCTGGGTGCTAGTGGGCGGGGTTCTT
GCAGCTCTGGCCGCGTACTGCCTGACAACGGGCAGCGTGGTCATTGTGGGCAGGAT-CGT
CCTGTCCGGGAGGCCAGCTGTAGTTCCCGACAGGGAGGTTCTCTACCAGGAGTTCGATGA
AATGGAAGAGTGCGCATCACACCTCCCTTACATCGAGCAGGGAATGCAGCTCGCCGAGCA
ATTTAAGCAGAAGGCACTCGGGTTGCTGCAAACAGCCACCAAGCAAGCGGAGGCTGCTGC
TCCCGTAGTGGAGTCCAAATGGCGCGCCCTTGAAGGCTTCTGGGCGAAGCACATGTGGAA
CTTCATTAGCGGGATACAGTACTTAGCAGGCTTGTCCACTCTGCCTGGGAACCCCGCGAT
AGCATCACTGATGGCATTTACGGCCTCTATCACCAGCCCGCT-CACCACCCAAAATACCC
TCATGTTTAACATCTTGGGGGGATGGGTGGCCGCCCAACTCGCCCCCCCCAGCGCTGCCT
CAGCCTTCGTGGGCGCCGGCATTGCCGGCGCGGCTGTTGGCAGCATAGGCCTTGGGAAGG
TGCTTGTAGACATCCTGGCGGGCTATGGAGCAGGGGTGGCAGGCGCACTCGTGGCCTTCA
AGGTCATGAGCGGCGAGATGCCCTCCACTGAGGACATGGTCAACTTGCTCCCTGCCATCC
TCTCTCCTGGTGCCCTGGTCGTCGGAGTCGTGTGCGCAGCAATACTGCGTCGGCACGTGG
GCCCAGGGGAGGGAGCTGTGCAGTGGATGAACCGGCTGATAGCGTTCGCCTCGCGGGGTA
ACCACGTCTCCCCCACGCACTATGTGCCAGAGAGCGACGCCGCAGCACGTGTCACCCAGA
TCCTCTCCAGCCTTACCATCACCCAGCTGTTGAAGAGGCTCCATCAGTGGATTAATGAGG
ACTGCTCCACGCCATGCTCCGGCTCGTGGCTCAGGGATGTTTGGGACTGGATATGTGCGG
TGCTGACCGATTTCAAGACCTGGCTCCAGTCCAAGCTCCTGCCGCGGTTGCCGGGAGTTC
CTTTCTTCTCATGCCAACGTGGGTACAAGGGAGTCTGGCGAGGAGATGGTGTCATGCATA
CCACCTGCCCCTGTGGCGCACAAATCTCCGGACATGTCAAAAACGGTTCCATGAGGATCG
TTGGACCTAAAACCTGCAGTAACACGTGGTGTGGAACATTTCCCATCAACGCGTATACCA
CAGGCCCCTGCACACCCTCCCCGGCGCCAAACTATTCCAAGGCGT--TGTGGCGGGTAGC
TGCTGAGGAGTACGTGGAGGTCACGCGGGTGGGGGATTTCCACTACGTGACGGGCTTGAC
CACTGACAACGTAAGATGCCCATGCCAGGTTCCGGCTCCCGAATTCTTCACGGAATTGGA
CGGGGTGCGGTTGCACAGGTACGCTCCGGCGTGTAAACCTCTCCTACGGGATGAGGTCAC
ATTCCAGGTCGGGCTCAACCAATACCCGGTTGGGTCACAGCTCCCATGTGAGCCCGAGCC
GGATGTGACAGTGCTCACTTCCATGCTTACCGACCCCCCCCACATTACAGCGGAAGCGGC
TAGGCGCAGGCTGGCCAGGGGGTCT------CCCCCCTCCTTGGCCAGCTCTTCGGCTAC
TCAGCTGTCCGCGCCTTCCCTGAAAGCAACATGCACCACCTGCCATAACGCCCCAGACGC
CGACCTCATCGAGGCCAACCTCCTGTGGCGGCAGGAGATGGGCGGGAACATCACCCGCGT
AGAGTCAGAGAATAAGGTGGTGATCCTGGACTCTTTTGAACCGCTACGAGCGGAGGAGGA
TGGGAGGGAAGTATCCGTTCCGGCGGAGATCCTGCGGAGAACCAGGAAATTCCCCCTAGC
GCTGCCCATAT--------------------------------------GGGCGCGCCCG
GACTACAACCCACCACTGCTAGAGTCTTGGAAGGACCCAGACTACGTCCCTCCGGTGGTA
CACGGGTGTCCACTGCCACCTACCAAGGCCCCTCCAATACCACCCCCACGGAGAAAGAGG
ACGGTTGTCCTGACAGAATCCACCGTGTCTTCTGCCTTGGCGGAGCTTGCTACGAAAGCC
TTCGG-CAGCTC------------CGGATCATCGG--CCGTCGACAGCGGCACA-GCGAC
CGCCCCTCCTGACCAGCCCCTCGACGACGGTGGTACAGGGTCCGACGTTGAGTCGTACTC
CTCCATGCCCCCCCTTGAGGGGGAGCCGGGGGATCCCGATCT------------------
----------------CAGTGA---------------------------CGGGTCTTGGT
CCACTGTGAGCGAGGAGGGTGGTGAGGACGTCGTCTGCTGCTCGATGTCCTACACATGGA
CAGGCGCTTTAATCACGCCATGCGCCGCGGAGGAGAGCAAGCTGCCCATCAATGCGTTGA
GCAACTCTTTGCTGCGTCATCACAACCTGGTCTATGCCACAACATCCCGCAGCGCAAGCC
AGCGGCAGAAGAAAGTCACCTTTGACAGACTGCAGGTCCTGGACGATCACTACCGGGACG
TGCTCAAGGAGATGAAGGCGAAGGCGTCCACAGTTAAGGCTAGACTTCTATCCGTAGAGG
AAGCCTGCAAGCTGACGCCCCCACACTCAGCCAGATCCAAGTTTGGCTATGGGGCAAAGG
ACGTCCGGAGCCTATCCAGCAAGGCCGTCAACCACATCCACTCCGTGTGGAAGGACTTGT
TGGAAGACACTGAAACACCAATTCAAACCACCATCATGGCAAAAAATGAGGTCTTTTGTG
TCCAACCAGAGAAGGGAGGCCGCAAGCCGGCTCGCCTTATCGTATTCCCAGATTTGGGGG
TCCGTGTGTGCGAGAAAATGGCCCTTTACGACGTGGTCTCCACTCTTCCCCAGGCCGTGA
TGGGCTCCTCATACGGATTTCAGTACTCCCCTGGGCAGCGGGTCGAGTTCCTGGTGAATG
CTTGGAAATCAAAGAAGAACCCTATGGGCTTCGCATATGACACCCGCTGTTTTGAATCAA
CGGTCACTGAGAATGACATCCGTGTTGAGGAGTCAATTTACCAATGTTGTGACTTGGCCC
CCGAGGCCAGACTAGCCATAAGGTCGCTCACAGAGCGACTTTATGTCGGGGGCCCCATGA
CCAATTCAAAAGGGCAGAACTGCGGCTATCGCCGGTGCCGCGCCAGCGGCGTGCTGACGA
CCAGCTGCGGCAATACCCTCACATGTTATTTAAAGGCCTCTGCAGCCTGTCGAGCTGCGA
AGCTCCGGGACTGCACCATGCTCGTGTGCGGAGACGACCTTGTCGTTATCTGTGAGAGCG
CAGGAACCCAGGAGGATGCGGCGAGCCTACGAGTCTTCACGGAGGCTATGACTAGGTACT
CTGCCCCCCCCGGCGACCCGCCCCAACCAGAATACGACCTGGAGCTGATAACATCATGCT
CCTCCAACGTGTCGGTCGCGCACGATGCAAACAACAAACGGGTGTACTACCTCACTCGGG
ATCCCACCATCCCCCTTTCGCGGGCCGCGTGGGAAACGGCTAGACACACTCCAGTCAACT
CCTGGCTAGGCAACATCATCATGTATGCGCCCACCTTGTGGGCAAGGATGATTCTGATGA
CTCACTTCTTCTCCATCCTTCTAGCCCAGGAGCAACTTGAAAAAGCCCTAGATTGTCAGA
TCTATGGGGCCATTTACTCCATTGAACCACTTGACCTACCTCAGATCATTCAGCGACTCC
ATGGTCTTAGCGCATTTTCACTCCATACTTACTCTCCAGGTGAAATCAATCGGGTGGCTT
CATGCCTCAGGAAACTTGGGGTACCACCCTTGCGAGTCTGGAGACATCGGGC--------
CAGAAGTGTCCGCGCTAAGCTACTGTCCCAGGGGGGGAGGGCCGCTATTTGCGGAAAATA
CCTCTTCAACTGGGCAGTAAGGACCAAGCTCAAACTCACTCCAATCCCGGCTGCGTC-CC
GGTTGGACTTGTCCAGCTGGTTCGTTGCTGGTTACAGCGGGGGAGACATAT-ATCACAGC
GTG-TCTCGCGCCCGACCCCGCTGGTTCTTGTGGTAGCCTACTCCTACTTTCTGTAGGGG
TAGGCATCTATCTGCTCCCCAACCGTT-AAA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------
|
