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<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">

<html>
<head>
<title>NEXUS CLASS LIBRARY: Index of Member Functions</title>
<style type="text/css">
<!--
@import url(ncl.css);
.classy {font-family: Arial, sans-serif; color: navy;}
.variablename {font-weight: bold; color: maroon;}
-->
</style>
</head>
<body>


<table border="1" width="100%">
<tr><td>
<table border="0" width="100%">
<tr>
<td align="left"><span class="classy">NEXUS CLASS LIBRARY</span></td>
<td align="right"><span class="classy"><a href="v2.0index.html">home</a> | <a href="classes.html">classes</a> | <a href="functions.html">functions</a></span></td>
</tr>
</table>
</td></tr>
</table>
<h1>NCL Member Functions</h1>
<table border="0">
<tr><td><a href="NxsString.html#Abbreviates391">Abbreviates</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsToken.html#Abbreviation280">Abbreviation</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsReader.html#Add44">Add</a></td><td><a href="NxsReader.html">NxsReader</a></td></tr>
<tr><td><a href="NxsString.html#AddQuotes81">AddQuotes</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsSetReader.html#AddRange47">AddRange</a></td><td><a href="NxsSetReader.html">NxsSetReader</a></td></tr>
<tr><td><a href="NxsDiscreteMatrix.html#AddRows55">AddRows</a></td><td><a href="NxsDiscreteMatrix.html">NxsDiscreteMatrix</a></td></tr>
<tr><td><a href="NxsDiscreteMatrix.html#AddState90">AddState</a></td><td><a href="NxsDiscreteMatrix.html">NxsDiscreteMatrix</a></td></tr>
<tr><td><a href="NxsDiscreteMatrix.html#AddState113">AddState</a></td><td><a href="NxsDiscreteMatrix.html">NxsDiscreteMatrix</a></td></tr>
<tr><td><a href="NxsString.html#AddTail63">AddTail</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsTaxaBlock.html#AddTaxonLabel230">AddTaxonLabel</a></td><td><a href="NxsTaxaBlock.html">NxsTaxaBlock</a></td></tr>
<tr><td><a href="NxsToken.html#AppendToComment144">AppendToComment</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsToken.html#AppendToToken153">AppendToToken</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#ApplyDelset72">ApplyDelset</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsAssumptionsBlock.html#ApplyExSet170">ApplyExSet</a></td><td><a href="NxsAssumptionsBlock.html">NxsAssumptionsBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#ApplyExset104">ApplyExset</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#ApplyIncludeset135">ApplyIncludeset</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#ApplyRestoreset167">ApplyRestoreset</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsToken.html#AtEOF284">AtEOF</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsToken.html#AtEOL293">AtEOL</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="BASICCMDLINE.html#BASICCMDLINE49">BASICCMDLINE</a></td><td><a href="BASICCMDLINE.html">BASICCMDLINE</a></td></tr>
<tr><td><a href="BASICCMDLINE.html#BASICCMDLINE71">~BASICCMDLINE</a></td><td><a href="BASICCMDLINE.html">BASICCMDLINE</a></td></tr>
<tr><td><a href="NxsToken.html#Begins337">Begins</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsString.html#BlanksToUnderscores437">BlanksToUnderscores</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsToken.html#BlanksToUnderscores302">BlanksToUnderscores</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsReader.html#BlockListEmpty125">BlockListEmpty</a></td><td><a href="NxsReader.html">NxsReader</a></td></tr>
<tr><td><a href="NxsString.html#BreakPipeSeparatedList856">BreakPipeSeparatedList</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsTreesBlock.html#BriefReport542">BriefReport</a></td><td><a href="NxsTreesBlock.html">NxsTreesBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#BuildCharPosArray201">BuildCharPosArray</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsString.html#Capitalize382">Capitalize</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsTaxaBlock.html#ChangeTaxonLabel247">ChangeTaxonLabel</a></td><td><a href="NxsTaxaBlock.html">NxsTaxaBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#CharLabelToNumber223">CharLabelToNumber</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsBlock.html#CharLabelToNumber51">CharLabelToNumber</a></td><td><a href="NxsBlock.html">NxsBlock</a></td></tr>
<tr><td><a href="NxsEmptyBlock.html#CharLabelToNumber45">CharLabelToNumber</a></td><td><a href="NxsEmptyBlock.html">NxsEmptyBlock</a></td></tr>
<tr><td><a href="BASICCMDLINE.html#CharLabelToNumber88">CharLabelToNumber</a></td><td><a href="BASICCMDLINE.html">BASICCMDLINE</a></td></tr>
<tr><td><a href="NxsString.html#clear267">clear</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#Consume244">Consume</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsString.html#ConvertToDouble699">ConvertToDouble</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#ConvertToInt669">ConvertToInt</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#ConvertToLong683">ConvertToLong</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#ConvertToUnsigned657">ConvertToUnsigned</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsDiscreteDatum.html#CopyFrom42">CopyFrom</a></td><td><a href="NxsDiscreteDatum.html">NxsDiscreteDatum</a></td></tr>
<tr><td><a href="NxsDiscreteMatrix.html#CopyStatesFromFirstTaxon165">CopyStatesFromFirstTaxon</a></td><td><a href="NxsDiscreteMatrix.html">NxsDiscreteMatrix</a></td></tr>
<tr><td><a href="NxsReader.html#DebugReportBlock142">DebugReportBlock</a></td><td><a href="NxsReader.html">NxsReader</a></td></tr>
<tr><td><a href="MyNexusFileReader.html#DebugReportBlock172">DebugReportBlock</a></td><td><a href="MyNexusFileReader.html">MyNexusFileReader</a></td></tr>
<tr><td><a href="NxsDiscreteMatrix.html#DebugSaveMatrix182">DebugSaveMatrix</a></td><td><a href="NxsDiscreteMatrix.html">NxsDiscreteMatrix</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#DebugShowMatrix348">DebugShowMatrix</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#DeleteTaxon323">DeleteTaxon</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsReader.html#Detach158">Detach</a></td><td><a href="NxsReader.html">NxsReader</a></td></tr>
<tr><td><a href="NxsBlock.html#Disable66">Disable</a></td><td><a href="NxsBlock.html">NxsBlock</a></td></tr>
<tr><td><a href="NxsDiscreteMatrix.html#DuplicateRow214">DuplicateRow</a></td><td><a href="NxsDiscreteMatrix.html">NxsDiscreteMatrix</a></td></tr>
<tr><td><a href="NxsBlock.html#Enable77">Enable</a></td><td><a href="NxsBlock.html">NxsBlock</a></td></tr>
<tr><td><a href="NxsString.html#endl589">endl</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsReader.html#EnteringBlock204">EnteringBlock</a></td><td><a href="NxsReader.html">NxsReader</a></td></tr>
<tr><td><a href="MyNexusFileReader.html#EnteringBlock82">EnteringBlock</a></td><td><a href="MyNexusFileReader.html">MyNexusFileReader</a></td></tr>
<tr><td><a href="BASICCMDLINE.html#EnteringBlock100">EnteringBlock</a></td><td><a href="BASICCMDLINE.html">BASICCMDLINE</a></td></tr>
<tr><td><a href="NxsString.html#Equals441">Equals</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsToken.html#Equals372">Equals</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsString.html#EqualsCaseInsensitive601">EqualsCaseInsensitive</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#ExcludeCharacter333">ExcludeCharacter</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsReader.html#Execute237">Execute</a></td><td><a href="NxsReader.html">NxsReader</a></td></tr>
<tr><td><a href="NxsReader.html#ExecuteStarting425">ExecuteStarting</a></td><td><a href="NxsReader.html">NxsReader</a></td></tr>
<tr><td><a href="NxsReader.html#ExecuteStopping436">ExecuteStopping</a></td><td><a href="NxsReader.html">NxsReader</a></td></tr>
<tr><td><a href="NxsReader.html#ExitingBlock217">ExitingBlock</a></td><td><a href="NxsReader.html">NxsReader</a></td></tr>
<tr><td><a href="MyNexusFileReader.html#ExitingBlock94">ExitingBlock</a></td><td><a href="MyNexusFileReader.html">MyNexusFileReader</a></td></tr>
<tr><td><a href="BASICCMDLINE.html#ExitingBlock115">ExitingBlock</a></td><td><a href="BASICCMDLINE.html">BASICCMDLINE</a></td></tr>
<tr><td><a href="BASICCMDLINE.html#FactoryDefaults126">FactoryDefaults</a></td><td><a href="BASICCMDLINE.html">BASICCMDLINE</a></td></tr>
<tr><td><a href="MyNexusFileReader.html#FileExists121">FileExists</a></td><td><a href="MyNexusFileReader.html">MyNexusFileReader</a></td></tr>
<tr><td><a href="BASICCMDLINE.html#FileExists184">FileExists</a></td><td><a href="BASICCMDLINE.html">BASICCMDLINE</a></td></tr>
<tr><td><a href="NxsTaxaBlock.html#FindTaxon319">FindTaxon</a></td><td><a href="NxsTaxaBlock.html">NxsTaxaBlock</a></td></tr>
<tr><td><a href="NxsDiscreteMatrix.html#Flush251">Flush</a></td><td><a href="NxsDiscreteMatrix.html">NxsDiscreteMatrix</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetActiveCharArray345">GetActiveCharArray</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetActiveTaxonArray356">GetActiveTaxonArray</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetCharLabel365">GetCharLabel</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetCharPos380">GetCharPos</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsAssumptionsBlock.html#GetCharSet74">GetCharSet</a></td><td><a href="NxsAssumptionsBlock.html">NxsAssumptionsBlock</a></td></tr>
<tr><td><a href="NxsAssumptionsBlock.html#GetCharSetNames62">GetCharSetNames</a></td><td><a href="NxsAssumptionsBlock.html">NxsAssumptionsBlock</a></td></tr>
<tr><td><a href="NxsToken.html#GetComment81">GetComment</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsToken.html#GetCurlyBracketedToken151">GetCurlyBracketedToken</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetDataType416">GetDataType</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsAssumptionsBlock.html#GetDefCharSetName84">GetDefCharSetName</a></td><td><a href="NxsAssumptionsBlock.html">NxsAssumptionsBlock</a></td></tr>
<tr><td><a href="NxsAssumptionsBlock.html#GetDefExSetName160">GetDefExSetName</a></td><td><a href="NxsAssumptionsBlock.html">NxsAssumptionsBlock</a></td></tr>
<tr><td><a href="NxsAssumptionsBlock.html#GetDefTaxSetName122">GetDefTaxSetName</a></td><td><a href="NxsAssumptionsBlock.html">NxsAssumptionsBlock</a></td></tr>
<tr><td><a href="NxsDiscreteMatrix.html#GetDiscreteDatum269">GetDiscreteDatum</a></td><td><a href="NxsDiscreteMatrix.html">NxsDiscreteMatrix</a></td></tr>
<tr><td><a href="NxsDistancesBlock.html#GetDistance758">GetDistance</a></td><td><a href="NxsDistancesBlock.html">NxsDistancesBlock</a></td></tr>
<tr><td><a href="NxsToken.html#GetDoubleQuotedToken185">GetDoubleQuotedToken</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsAssumptionsBlock.html#GetExSet150">GetExSet</a></td><td><a href="NxsAssumptionsBlock.html">NxsAssumptionsBlock</a></td></tr>
<tr><td><a href="NxsAssumptionsBlock.html#GetExSetNames138">GetExSetNames</a></td><td><a href="NxsAssumptionsBlock.html">NxsAssumptionsBlock</a></td></tr>
<tr><td><a href="NxsToken.html#GetFileColumn311">GetFileColumn</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsToken.html#GetFileLine330">GetFileLine</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="BASICCMDLINE.html#GetFileName209">GetFileName</a></td><td><a href="BASICCMDLINE.html">BASICCMDLINE</a></td></tr>
<tr><td><a href="NxsToken.html#GetFilePosition321">GetFilePosition</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetGapSymbol393">GetGapSymbol</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsBlock.html#GetID117">GetID</a></td><td><a href="NxsBlock.html">NxsBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetInternalRepresentation443">GetInternalRepresentation</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetMatchcharSymbol424">GetMatchcharSymbol</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetMaxObsNumStates406">GetMaxObsNumStates</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsTaxaBlock.html#GetMaxTaxonLabelLength265">GetMaxTaxonLabelLength</a></td><td><a href="NxsTaxaBlock.html">NxsTaxaBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetMissingSymbol459">GetMissingSymbol</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsDistancesBlock.html#GetMissingSymbol774">GetMissingSymbol</a></td><td><a href="NxsDistancesBlock.html">NxsDistancesBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetNChar467">GetNChar</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsDistancesBlock.html#GetNchar749">GetNchar</a></td><td><a href="NxsDistancesBlock.html">NxsDistancesBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetNCharTotal475">GetNCharTotal</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsToken.html#GetNextChar179">GetNextChar</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsToken.html#GetNextToken426">GetNextToken</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetNTax483">GetNTax</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsDistancesBlock.html#GetNtax741">GetNtax</a></td><td><a href="NxsDistancesBlock.html">NxsDistancesBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetNTaxTotal491">GetNTaxTotal</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetNumActiveChar423">GetNumActiveChar</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetNumActiveTaxa439">GetNumActiveTaxa</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsAssumptionsBlock.html#GetNumCharSets54">GetNumCharSets</a></td><td><a href="NxsAssumptionsBlock.html">NxsAssumptionsBlock</a></td></tr>
<tr><td><a href="NxsTreesBlock.html#GetNumDefaultTree371">GetNumDefaultTree</a></td><td><a href="NxsTreesBlock.html">NxsTreesBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetNumEliminated499">GetNumEliminated</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetNumEquates507">GetNumEquates</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsAssumptionsBlock.html#GetNumExSets130">GetNumExSets</a></td><td><a href="NxsAssumptionsBlock.html">NxsAssumptionsBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetNumMatrixCols516">GetNumMatrixCols</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetNumMatrixRows525">GetNumMatrixRows</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#GetNumStates533">GetNumStates</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
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<tr><td><a href="NxsDistancesBlock.html#NxsDistancesBlock49">~NxsDistancesBlock</a></td><td><a href="NxsDistancesBlock.html">NxsDistancesBlock</a></td></tr>
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<tr><td><a href="NxsEmptyBlock.html#NxsEmptyBlock33">~NxsEmptyBlock</a></td><td><a href="NxsEmptyBlock.html">NxsEmptyBlock</a></td></tr>
<tr><td><a href="NxsException.html#NxsException26">NxsException</a></td><td><a href="NxsException.html">NxsException</a></td></tr>
<tr><td><a href="NxsException.html#NxsException41">NxsException</a></td><td><a href="NxsException.html">NxsException</a></td></tr>
<tr><td><a href="NxsReader.html#NxsReader24">NxsReader</a></td><td><a href="NxsReader.html">NxsReader</a></td></tr>
<tr><td><a href="NxsReader.html#NxsReader33">~NxsReader</a></td><td><a href="NxsReader.html">NxsReader</a></td></tr>
<tr><td><a href="NxsSetReader.html#NxsSetReader26">NxsSetReader</a></td><td><a href="NxsSetReader.html">NxsSetReader</a></td></tr>
<tr><td><a href="NxsString.html#NxsString246">NxsString</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#NxsString291">NxsString</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#NxsString300">NxsString</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsTaxaBlock.html#NxsTaxaBlock25">NxsTaxaBlock</a></td><td><a href="NxsTaxaBlock.html">NxsTaxaBlock</a></td></tr>
<tr><td><a href="NxsTaxaBlock.html#NxsTaxaBlock35">~NxsTaxaBlock</a></td><td><a href="NxsTaxaBlock.html">NxsTaxaBlock</a></td></tr>
<tr><td><a href="NxsToken.html#NxsToken26">NxsToken</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsToken.html#NxsToken71">~NxsToken</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsTreesBlock.html#NxsTreesBlock25">NxsTreesBlock</a></td><td><a href="NxsTreesBlock.html">NxsTreesBlock</a></td></tr>
<tr><td><a href="NxsTreesBlock.html#NxsTreesBlock40">~NxsTreesBlock</a></td><td><a href="NxsTreesBlock.html">NxsTreesBlock</a></td></tr>
<tr><td><a href="NStrCaseInsensitiveEquals.html#operator194">operator()</a></td><td><a href="NStrCaseInsensitiveEquals.html">NStrCaseInsensitiveEquals</a></td></tr>
<tr><td><a href="NStrCaseSensitiveEquals.html#operator221">operator()</a></td><td><a href="NStrCaseSensitiveEquals.html">NStrCaseSensitiveEquals</a></td></tr>
<tr><td><a href="NxsStringEqual.html#operator233">operator()</a></td><td><a href="NxsStringEqual.html">NxsStringEqual</a></td></tr>
<tr><td><a href="NxsString.html#operator35">operator+=</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#operator326">operator+=</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#operator336">operator+=</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#operator346">operator+=</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#operator370">operator+=</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#operator405">operator+=</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#operator417">operator+=</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#operator429">operator+=</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#operator463">operator<<</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#operator502">operator<<</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#operator511">operator<<</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#operator520">operator<<</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#operator529">operator<<</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#operator538">operator<<</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#operator547">operator<<</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#operator556">operator<<</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#operator565">operator<<</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#operator598">operator<<</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#operator309">operator=</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#operator359">operator=</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsToken.html#OutputComment133">OutputComment</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsReader.html#OutputComment460">OutputComment</a></td><td><a href="NxsReader.html">NxsReader</a></td></tr>
<tr><td><a href="MyToken.html#OutputComment39">OutputComment</a></td><td><a href="MyToken.html">MyToken</a></td></tr>
<tr><td><a href="MyNexusFileReader.html#OutputComment106">OutputComment</a></td><td><a href="MyNexusFileReader.html">MyNexusFileReader</a></td></tr>
<tr><td><a href="MyNexusToken.html#OutputComment38">OutputComment</a></td><td><a href="MyNexusToken.html">MyNexusToken</a></td></tr>
<tr><td><a href="NxsReader.html#PositionInBlockList69">PositionInBlockList</a></td><td><a href="NxsReader.html">NxsReader</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#PositionInSymbols2348">PositionInSymbols</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="BASICCMDLINE.html#PreprocessNextCommand643">PreprocessNextCommand</a></td><td><a href="BASICCMDLINE.html">BASICCMDLINE</a></td></tr>
<tr><td><a href="NxsString.html#PrintF108">PrintF</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="BASICCMDLINE.html#PrintMessage686">PrintMessage</a></td><td><a href="BASICCMDLINE.html">BASICCMDLINE</a></td></tr>
<tr><td><a href="BASICCMDLINE.html#PurgeBlocks705">PurgeBlocks</a></td><td><a href="BASICCMDLINE.html">BASICCMDLINE</a></td></tr>
<tr><td><a href="NxsString.html#p_str574">p_str</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#QuotesNeeded393">QuotesNeeded</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsAssumptionsBlock.html#Read340">Read</a></td><td><a href="NxsAssumptionsBlock.html">NxsAssumptionsBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#Read2372">Read</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsBlock.html#Read129">Read</a></td><td><a href="NxsBlock.html">NxsBlock</a></td></tr>
<tr><td><a href="NxsTaxaBlock.html#Read45">Read</a></td><td><a href="NxsTaxaBlock.html">NxsTaxaBlock</a></td></tr>
<tr><td><a href="NxsDistancesBlock.html#Read528">Read</a></td><td><a href="NxsDistancesBlock.html">NxsDistancesBlock</a></td></tr>
<tr><td><a href="NxsEmptyBlock.html#Read76">Read</a></td><td><a href="NxsEmptyBlock.html">NxsEmptyBlock</a></td></tr>
<tr><td><a href="NxsTreesBlock.html#Read185">Read</a></td><td><a href="NxsTreesBlock.html">NxsTreesBlock</a></td></tr>
<tr><td><a href="BASICCMDLINE.html#Read744">Read</a></td><td><a href="BASICCMDLINE.html">BASICCMDLINE</a></td></tr>
<tr><td><a href="NxsReader.html#Reassign94">Reassign</a></td><td><a href="NxsReader.html">NxsReader</a></td></tr>
<tr><td><a href="NxsAssumptionsBlock.html#ReplaceTaxaBlockPtr44">ReplaceTaxaBlockPtr</a></td><td><a href="NxsAssumptionsBlock.html">NxsAssumptionsBlock</a></td></tr>
<tr><td><a href="NxsTreesBlock.html#ReplaceTaxaBlockPtr52">ReplaceTaxaBlockPtr</a></td><td><a href="NxsTreesBlock.html">NxsTreesBlock</a></td></tr>
<tr><td><a href="NxsToken.html#ReplaceToken409">ReplaceToken</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsAssumptionsBlock.html#Report423">Report</a></td><td><a href="NxsAssumptionsBlock.html">NxsAssumptionsBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#Report2463">Report</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsBlock.html#Report149">Report</a></td><td><a href="NxsBlock.html">NxsBlock</a></td></tr>
<tr><td><a href="NxsTaxaBlock.html#Report187">Report</a></td><td><a href="NxsTaxaBlock.html">NxsTaxaBlock</a></td></tr>
<tr><td><a href="NxsDistancesBlock.html#Report627">Report</a></td><td><a href="NxsDistancesBlock.html">NxsDistancesBlock</a></td></tr>
<tr><td><a href="NxsEmptyBlock.html#Report143">Report</a></td><td><a href="NxsEmptyBlock.html">NxsEmptyBlock</a></td></tr>
<tr><td><a href="NxsTreesBlock.html#Report503">Report</a></td><td><a href="NxsTreesBlock.html">NxsTreesBlock</a></td></tr>
<tr><td><a href="BASICCMDLINE.html#Report827">Report</a></td><td><a href="BASICCMDLINE.html">BASICCMDLINE</a></td></tr>
<tr><td><a href="NxsAssumptionsBlock.html#Reset405">Reset</a></td><td><a href="NxsAssumptionsBlock.html">NxsAssumptionsBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#Reset2638">Reset</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsBlock.html#Reset142">Reset</a></td><td><a href="NxsBlock.html">NxsBlock</a></td></tr>
<tr><td><a href="NxsTaxaBlock.html#Reset214">Reset</a></td><td><a href="NxsTaxaBlock.html">NxsTaxaBlock</a></td></tr>
<tr><td><a href="NxsDataBlock.html#Reset38">Reset</a></td><td><a href="NxsDataBlock.html">NxsDataBlock</a></td></tr>
<tr><td><a href="NxsDiscreteMatrix.html#Reset478">Reset</a></td><td><a href="NxsDiscreteMatrix.html">NxsDiscreteMatrix</a></td></tr>
<tr><td><a href="NxsDistancesBlock.html#Reset707">Reset</a></td><td><a href="NxsDistancesBlock.html">NxsDistancesBlock</a></td></tr>
<tr><td><a href="NxsEmptyBlock.html#Reset134">Reset</a></td><td><a href="NxsEmptyBlock.html">NxsEmptyBlock</a></td></tr>
<tr><td><a href="NxsTreesBlock.html#Reset348">Reset</a></td><td><a href="NxsTreesBlock.html">NxsTreesBlock</a></td></tr>
<tr><td><a href="BASICCMDLINE.html#Reset819">Reset</a></td><td><a href="BASICCMDLINE.html">BASICCMDLINE</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#ResetSymbols2712">ResetSymbols</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsToken.html#ResetToken418">ResetToken</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#RestoreTaxon747">RestoreTaxon</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsString.html#RightJustifyDbl343">RightJustifyDbl</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#RightJustifyLong305">RightJustifyLong</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#RightJustifyString372">RightJustifyString</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsSetReader.html#Run101">Run</a></td><td><a href="NxsSetReader.html">NxsSetReader</a></td></tr>
<tr><td><a href="BASICCMDLINE.html#Run843">Run</a></td><td><a href="BASICCMDLINE.html">BASICCMDLINE</a></td></tr>
<tr><td><a href="NxsAssumptionsBlock.html#SetCallback510">SetCallback</a></td><td><a href="NxsAssumptionsBlock.html">NxsAssumptionsBlock</a></td></tr>
<tr><td><a href="NxsDistancesBlock.html#SetDistance856">SetDistance</a></td><td><a href="NxsDistancesBlock.html">NxsDistancesBlock</a></td></tr>
<tr><td><a href="NxsDiscreteMatrix.html#SetGap509">SetGap</a></td><td><a href="NxsDiscreteMatrix.html">NxsDiscreteMatrix</a></td></tr>
<tr><td><a href="NxsDiscreteMatrix.html#SetGap526">SetGap</a></td><td><a href="NxsDiscreteMatrix.html">NxsDiscreteMatrix</a></td></tr>
<tr><td><a href="NxsToken.html#SetLabileFlagBit438">SetLabileFlagBit</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsDiscreteMatrix.html#SetMissing539">SetMissing</a></td><td><a href="NxsDiscreteMatrix.html">NxsDiscreteMatrix</a></td></tr>
<tr><td><a href="NxsDiscreteMatrix.html#SetMissing556">SetMissing</a></td><td><a href="NxsDiscreteMatrix.html">NxsDiscreteMatrix</a></td></tr>
<tr><td><a href="NxsDistancesBlock.html#SetMissing875">SetMissing</a></td><td><a href="NxsDistancesBlock.html">NxsDistancesBlock</a></td></tr>
<tr><td><a href="NxsDistancesBlock.html#SetNchar892">SetNchar</a></td><td><a href="NxsDistancesBlock.html">NxsDistancesBlock</a></td></tr>
<tr><td><a href="NxsBlock.html#SetNexus160">SetNexus</a></td><td><a href="NxsBlock.html">NxsBlock</a></td></tr>
<tr><td><a href="NxsTaxaBlock.html#SetNtax348">SetNtax</a></td><td><a href="NxsTaxaBlock.html">NxsTaxaBlock</a></td></tr>
<tr><td><a href="NxsDiscreteMatrix.html#SetPolymorphic570">SetPolymorphic</a></td><td><a href="NxsDiscreteMatrix.html">NxsDiscreteMatrix</a></td></tr>
<tr><td><a href="NxsDiscreteMatrix.html#SetPolymorphic589">SetPolymorphic</a></td><td><a href="NxsDiscreteMatrix.html">NxsDiscreteMatrix</a></td></tr>
<tr><td><a href="NxsToken.html#SetSpecialPunctuationCharacter428">SetSpecialPunctuationCharacter</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsDiscreteMatrix.html#SetState607">SetState</a></td><td><a href="NxsDiscreteMatrix.html">NxsDiscreteMatrix</a></td></tr>
<tr><td><a href="NxsDiscreteMatrix.html#SetState627">SetState</a></td><td><a href="NxsDiscreteMatrix.html">NxsDiscreteMatrix</a></td></tr>
<tr><td><a href="NxsString.html#SetToShortestAbbreviation729">SetToShortestAbbreviation</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#ShortenTo470">ShortenTo</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#ShowStateLabels2777">ShowStateLabels</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#ShowStates758">ShowStates</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsReader.html#SkippingBlock472">SkippingBlock</a></td><td><a href="NxsReader.html">NxsReader</a></td></tr>
<tr><td><a href="MyNexusFileReader.html#SkippingBlock146">SkippingBlock</a></td><td><a href="MyNexusFileReader.html">MyNexusFileReader</a></td></tr>
<tr><td><a href="BASICCMDLINE.html#SkippingBlock900">SkippingBlock</a></td><td><a href="BASICCMDLINE.html">BASICCMDLINE</a></td></tr>
<tr><td><a href="NxsBlock.html#SkippingCommand171">SkippingCommand</a></td><td><a href="NxsBlock.html">NxsBlock</a></td></tr>
<tr><td><a href="NxsEmptyBlock.html#SkippingCommand156">SkippingCommand</a></td><td><a href="NxsEmptyBlock.html">NxsEmptyBlock</a></td></tr>
<tr><td><a href="MyCharactersBlock.html#SkippingCommand229">SkippingCommand</a></td><td><a href="MyCharactersBlock.html">MyCharactersBlock</a></td></tr>
<tr><td><a href="MyDataBlock.html#SkippingCommand252">SkippingCommand</a></td><td><a href="MyDataBlock.html">MyDataBlock</a></td></tr>
<tr><td><a href="MyAssumptionsBlock.html#SkippingCommand274">SkippingCommand</a></td><td><a href="MyAssumptionsBlock.html">MyAssumptionsBlock</a></td></tr>
<tr><td><a href="BASICCMDLINE.html#SkippingCommand915">SkippingCommand</a></td><td><a href="BASICCMDLINE.html">BASICCMDLINE</a></td></tr>
<tr><td><a href="NxsReader.html#SkippingDisabledBlock485">SkippingDisabledBlock</a></td><td><a href="NxsReader.html">NxsReader</a></td></tr>
<tr><td><a href="MyNexusFileReader.html#SkippingDisabledBlock160">SkippingDisabledBlock</a></td><td><a href="MyNexusFileReader.html">MyNexusFileReader</a></td></tr>
<tr><td><a href="BASICCMDLINE.html#SkippingDisabledBlock929">SkippingDisabledBlock</a></td><td><a href="BASICCMDLINE.html">BASICCMDLINE</a></td></tr>
<tr><td><a href="NxsToken.html#StoppedOn456">StoppedOn</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsToken.html#StripWhitespace602">StripWhitespace</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsAssumptionsBlock.html#TaxonLabelToNumber521">TaxonLabelToNumber</a></td><td><a href="NxsAssumptionsBlock.html">NxsAssumptionsBlock</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#TaxonLabelToNumber780">TaxonLabelToNumber</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
<tr><td><a href="NxsBlock.html#TaxonLabelToNumber185">TaxonLabelToNumber</a></td><td><a href="NxsBlock.html">NxsBlock</a></td></tr>
<tr><td><a href="NxsEmptyBlock.html#TaxonLabelToNumber169">TaxonLabelToNumber</a></td><td><a href="NxsEmptyBlock.html">NxsEmptyBlock</a></td></tr>
<tr><td><a href="BASICCMDLINE.html#TaxonLabelToNumber942">TaxonLabelToNumber</a></td><td><a href="BASICCMDLINE.html">BASICCMDLINE</a></td></tr>
<tr><td><a href="NxsString.html#ToHex625">ToHex</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#ToLower493">ToLower</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#ToUpper25">ToUpper</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsToken.html#ToUpper617">ToUpper</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsDataBlock.html#TransferTo49">TransferTo</a></td><td><a href="NxsDataBlock.html">NxsDataBlock</a></td></tr>
<tr><td><a href="NxsString.html#UnderscoresToBlanks452">UnderscoresToBlanks</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="NxsString.html#UpperCasePrefix644">UpperCasePrefix</a></td><td><a href="NxsString.html">NxsString</a></td></tr>
<tr><td><a href="BASICCMDLINE.html#UserQuery954">UserQuery</a></td><td><a href="BASICCMDLINE.html">BASICCMDLINE</a></td></tr>
<tr><td><a href="NxsToken.html#Write469">Write</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsToken.html#Writeln479">Writeln</a></td><td><a href="NxsToken.html">NxsToken</a></td></tr>
<tr><td><a href="NxsCharactersBlock.html#WriteStates2878">WriteStates</a></td><td><a href="NxsCharactersBlock.html">NxsCharactersBlock</a></td></tr>
</table>
</body>
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