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#NEXUS
BEGIN TAXA;
TITLE Untitled_TAXA_Block_1;
DIMENSIONS NTax = 8;
TAXLABELS A B C D E F G H;
END;
BEGIN CHARACTERS;
TITLE Untitled_CHARACTERS_Block_1;
LINK TAXA = Untitled_TAXA_Block_1;
DIMENSIONS NChar=9;
FORMAT Datatype=Protein Gap=-;
CHARLABELS one two three four five six seven eight nine;
Matrix
A THIS-IS-A
B THIS-IS-B
C THIS-IS-C
D THIS-IS-D
E THIS-IS-E
F THIS-IS-F
G THIS-IS-G
H THIS-IS-H
;
END;
BEGIN TREES;
TITLE Untitled_TREES_Block_1;
LINK TAXA = Untitled_TAXA_Block_1;
TRANSLATE
1 A,
2 B,
3 C,
4 D,
5 E,
6 F,
7 G,
8 H;
TREE basic_rake = [&R](1:1.0,2:1.0,3:1.0,4:1.0,5:1.0,6:1.0,7:1.0,8:1.0);
END;
BEGIN CODONS;
LINK CHARACTERS = Untitled_CHARACTERS_Block_1;
CodeSet * UNTITLED = universal : 1-9;
END;
BEGIN SETS;
LINK CHARACTERS = Untitled_CHARACTERS_Block_1;
CHARSET UNTITLED = 1-4 7-9;
CHARSET UNTITLEDo = 1 3 4 7-9;
END;
BEGIN ASSUMPTIONS;
LINK CHARACTERS = Untitled_CHARACTERS_Block_1;
TypeSet * UNTITLED = unord : 1-9;
END;
BEGIN MESQUITECHARMODELS;
ProbModelSet * UNTITLED = 'Mk1 (est.)' : 1 - 9;
END;
BEGIN MESQUITE;
MESQUITESCRIPTVERSION 2;
TITLE AUTO;
tell ProjectCoordinator;
getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
tell It;
setID 0 2002854640106134798;
endTell;
getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
tell It;
setID 0 5914780497712519392;
checksum 0 1033486703 null;
endTell;
getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord;
tell It;
showDataWindow #5914780497712519392 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker;
tell It;
getWindow;
tell It;
setExplanationSize 30;
setAnnotationSize 20;
setFontIncAnnot 0;
setFontIncExp 0;
setSize 700 564;
setLocation 370 38;
setFont SanSerif;
setFontSize 10;
getToolPalette;
tell It;
endTell;
setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow;
colorCells #mesquite.charMatrices.ColorByState.ColorByState;
setBackground White;
toggleShowNames on;
toggleShowTaxonNames on;
toggleTight off;
toggleShowChanges off;
toggleSeparateLines off;
toggleShowStates on;
toggleAutoWCharNames off;
toggleShowDefaultCharNames off;
toggleConstrainCW on;
setColumnWidth 16;
toggleBirdsEye off;
toggleColorsPanel off;
birdsEyeWidth 2;
toggleLinkedScrolling on;
toggleScrollLinkedTables off;
endTell;
showWindow;
getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip;
tell It;
showStrip off;
endTell;
getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
tell It;
togglePanel off;
endTell;
getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip;
tell It;
showStrip off;
endTell;
getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
tell It;
setColor Red;
removeColor off;
endTell;
getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector;
tell It;
autotabOff;
endTell;
getEmployee #mesquite.align.AlignToDropped.AlignToDropped;
tell It;
gapCosts 8 3 2 2;
subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5;
endTell;
endTell;
endTell;
endTell;
END;
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