File: sample.tre

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libncl 2.1.18%2Bdfsg-2
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#NEXUS
BEGIN PAUP;
    lset nst = 2 basefreq = empirical tratio = estimate rates = gamma shape = estimate;
END;
BEGIN TAXA;
    TITLE Untitled_TAXA_Block_1;
    DIMENSIONS NTax = 11;
    TAXLABELS P._fimbriata P._robusta P._americana P._myriophylla P._articulata P._parksii P._gracilis P._macrophylla P._polygama P._basiramia P._ciliata;
END;
BEGIN TREES;
    TITLE Untitled_TREES_Block_1;
    LINK TAXA = Untitled_TAXA_Block_1;
    TRANSLATE
        1 P._fimbriata,
        2 P._robusta,
        3 P._americana,
        4 P._myriophylla,
        5 P._articulata,
        6 P._parksii,
        7 P._gracilis,
        8 P._macrophylla,
        9 P._polygama,
        10 P._basiramia,
        11 P._ciliata;
    TREE unrooted = [&U](1,2,((4,3,(5,6)),((9,8),(7,(10,11)))));
    TREE rooted = [&R]((1,2),((4,3,(5,6)),(9,(8,(7,(10,11))))));
    TREE u_to_r = [&R]((1,2),((4,3,(5,6)),(9,(8,(7,(10,11))))));
    TREE r_to_u = [&U](1,2,((4,3,(5,6)),((9,8),(7,(10,11)))));
END;