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<meta name="KeyWords"
content="PAL, phylogenetic analysis library, molecular phylogenetics,
molecular evolution, phylogeny,
tree reconstruction, maximum likelihood">
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<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
<title>The PAL Project</title>
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<b>About</b>
<br>
<a href = "people.html"> People Involved </a>
<br>
<a href = "features.html">Features</a>
<br>
<a href = "user_interfaces.html">User Interfaces</a>
<br>
<a href = "related.html">Related Projects</a>
<br>
<br>
<a href = "download.html">Downloads and Installation</a>
<br>
<a href = "history.html">History</a>
<br>
<br>
<a href = "contributing.html">Contributing</a>
<br>
<a href = "acknowledgements.html">Acknowledgements</a>
<br>
<br>
<a href = "online.html">Pal Online</a>
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<img src=pal.gif hspace=10 align=left ALT="PAL icon">
<strong><font size="+2">PAL: Phylogenetic Analysis Library</font></strong>
<br>
<strong><em>
<center>
A Java library for molecular evolution and phylogenetics<br>
Version 1.5 (January 15, 2004)
</center>
</em></strong>
<p>
The PAL project (<a href="http://www.cebl.auckland.ac.nz/pal-project">http://www.cebl.auckland.ac.nz/pal-project</a>) is
a collaborative effort dedicated to provide a high quality Java library
for use in molecular evolution and phylogenetics.
<p>
This package may be distributed under the terms of the
<a href="license.html">GNU Lesser General Public License</a>
<p>
Copyright (c) 1999-2004 PAL Development Core Team.
<p><br>
<strong><em>
<a name="s1">Overview:</a>
</em></strong>
<p>
The PAL project is a collaborative effort to provide a
high quality Java library
for use in molecular evolution and phylogenetics.
Updates of PAL are released in regular intervals.
At present (version 1.4) PAL consists of approximately 200 public
classes/interfaces in 16 packages
with a total of more than
35,000 lines of Java code. Please refer to the
API documentation (available in source archives) for a detailed description
of all classes and methods available, and to the
<a href="history.html">release history</a> for an overview
of the development history of PAL.
<p>
Please feel free to use PAL or parts of it in your own programs,
the terms and conditions for copying, distribution and
modification of the <a href="license.html">GNU Lesser General Public License</a>
apply. (Note that previous versions of PAL were licensed under the
GNU GPL rather the GNU LGPL.)
<p>
Contributing code to PAL is greatly encouraged, please read the following
<a href="contributing.html">guidelines</a>.
<p>
If you wish to cite PAL please use
<dl>
<dd>
<font size=-1>
Drummond, A., and K. Strimmer.
2001. PAL: An object-oriented programming library for molecular
evolution and phylogenetics. Bioinformatics <strong>17</strong>: 662-663.
</font>
</dd>
</dl>
<p>
This paper provides an overview over PAL version 1.1.
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