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//
// File: test_cborpsm.cpp
// Created by: Olivier Langella
// Created on: 8/7/2025
//
/*******************************************************************************
* Copyright (c) 2025 Olivier Langella <Olivier.Langella@universite-paris-saclay.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
******************************************************************************/
// ./tests/pappsotree/catch2-only-pappsotree [cborpsm] -s
// ./tests/pappsotree/catch2-only-pappsotree [cborfeatures] -s
#include <catch2/catch_test_macros.hpp>
#include <pappsomspp/core/processing/cbor/psm/evalscan/psmfeatures.h>
#include <pappsomspp/core/processing/cbor/psm/psmcbor2json.h>
#include <pappsomspp/core/processing/cbor/psm/psmfileappend.h>
#include <pappsomspp/core/processing/cbor/psm/psmfilereaderbase.h>
#include <pappsomspp/core/processing/uimonitor/uimonitorvoid.h>
#include <odsstream/odsdocwriter.h>
#include <QDebug>
class CborTest : public pappso::cbor::psm::PsmFileReaderBase
{
public:
CborTest(CalcWriterInterface &output) : m_output(output)
{
m_output.writeSheet("psm list");
m_output.writeCell("index");
m_output.writeCell("sample");
m_output.writeCell("Proforma");
m_output.writeLine();
};
void
psmReady(pappso::UiMonitorInterface &monitor [[maybe_unused]]) override
{
// qDebug() << "coucou";
m_output.writeCell((std::size_t)m_cborScanId.value("index").toInteger());
m_output.writeCell(m_currentSampleName);
m_output.writeCell(m_currentPsmProforma);
m_output.writeLine();
};
private:
CalcWriterInterface &m_output;
};
TEST_CASE("cbor psm map test suite.", "[cborfeatures]")
{
// Set the debugging message formatting pattern.
qSetMessagePattern(QString("%{file}@%{line}, %{function}(): %{message}"));
/*
SECTION("..:: PSM cbor features::..", "[cborfeatures]")
{
pappso::UiMonitorVoid monitor;
QFile cbor_file(
"/gorgone/pappso/moulon/users/Olivier/20250402_RD_mais_deepprot/specoms/"
"specoms_1_F2_vs_B73.cbor");
cbor_file.open(QIODevice::ReadOnly);
QFile features_file("features.cbor");
features_file.open(QIODevice::WriteOnly);
pappso::cbor::CborStreamWriter writer(&features_file);
pappso::cbor::psm::PsmFeatures psm_features(1000, &writer);
psm_features.readCbor(&cbor_file, monitor);
// xic_writer.write(xic);
features_file.close();
cbor_file.close();
}
*/
}
TEST_CASE("cbor psm map test suite.", "[cborpsm]")
{
// Set the debugging message formatting pattern.
qSetMessagePattern(QString("%{file}@%{line}, %{function}(): %{message}"));
SECTION("..:: PSM cbor map ::..", "[cborpsm]")
{
pappso::UiMonitorVoid monitor;
QFile cbor_file(
"/gorgone/pappso/moulon/users/Olivier/20250402_RD_mais_deepprot/specoms/"
"specoms_1_F2_vs_B73.cbor");
cbor_file.open(QIODevice::ReadOnly);
QFile fileods("test.ods");
OdsDocWriter writer(&fileods);
CborTest cbor_pappso(writer);
cbor_pappso.readCbor(&cbor_file, monitor);
// xic_writer.write(xic);
writer.close();
fileods.close();
}
SECTION("..:: PSM cbor append file ::..", "[cborpsm]")
{
pappso::UiMonitorVoid monitor;
QFile output_file_cbor("append.cbor");
output_file_cbor.open(QIODevice::WriteOnly);
pappso::cbor::CborStreamWriter cbor_output(&output_file_cbor);
pappso::cbor::psm::PsmFileAppend append_cbor(&cbor_output);
QFile cbor_file(
"/gorgone/pappso/moulon/users/Olivier/20250402_RD_mais_deepprot/specoms/"
"specoms_1_F2_vs_B73.cbor");
cbor_file.open(QIODevice::ReadOnly);
append_cbor.readCbor(&cbor_file, monitor);
cbor_file.close();
REQUIRE(true);
QFile cbor_file2(
"/gorgone/pappso/moulon/users/Olivier/20250402_RD_mais_deepprot/specoms/"
"specoms_2_F2_vs_B73.cbor");
cbor_file2.open(QIODevice::ReadOnly);
append_cbor.readCbor(&cbor_file2, monitor);
cbor_file2.close();
REQUIRE(true);
append_cbor.close();
output_file_cbor.close();
QFile fileods("append.ods");
OdsDocWriter writer(&fileods);
REQUIRE(true);
CborTest cbor_pappso(writer);
QFile cbor_file3("append.cbor");
cbor_file3.open(QIODevice::ReadOnly);
cbor_pappso.readCbor(&cbor_file3, monitor);
// xic_writer.write(xic);
writer.close();
fileods.close();
}
SECTION("..:: PSM cbor map ::..", "[cborpsm]")
{
pappso::UiMonitorVoid monitor;
QFile cbor_file("append.cbor");
cbor_file.open(QIODevice::ReadOnly);
QFile fileods("test2.ods");
OdsDocWriter writer(&fileods);
CborTest cbor_pappso(writer);
cbor_pappso.readCbor(&cbor_file, monitor);
// xic_writer.write(xic);
writer.close();
fileods.close();
}
}
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