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//
// File: test_cborsage.cpp
// Created by: Olivier Langella
// Created on: 17/7/2025
//
/*******************************************************************************
* Copyright (c) 2025 Olivier Langella <Olivier.Langella@universite-paris-saclay.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
******************************************************************************/
// ./tests/pappsotree/catch2-only-pappsotree [cborsage] -s
#include <catch2/catch_test_macros.hpp>
#include <pappsomspp/core/processing/cbor/psm/sage/sagefilereader.h>
#include <pappsomspp/core/processing/cbor/psm/psmfilereaderbase.h>
#include <pappsomspp/core/processing/uimonitor/uimonitorvoid.h>
#include <odsstream/odsdocwriter.h>
#include <QDebug>
class CborTest : public pappso::cbor::psm::PsmFileReaderBase
{
public:
CborTest(CalcWriterInterface &output) : m_output(output)
{
m_output.writeSheet("psm list");
m_output.writeCell("index");
m_output.writeCell("sample");
m_output.writeCell("Proforma");
m_output.writeLine();
};
void
psmReady(pappso::UiMonitorInterface &monitor [[maybe_unused]]) override
{
// qDebug() << "coucou";
m_output.writeCell((std::size_t)m_cborScanId.value("index").toInteger());
m_output.writeCell(m_currentSampleName);
m_output.writeCell(m_currentPsmProforma);
m_output.writeLine();
};
private:
CalcWriterInterface &m_output;
};
TEST_CASE("cbor psm map test suite.", "[cborsage]")
{
// Set the debugging message formatting pattern.
qSetMessagePattern(QString("%{file}@%{line}, %{function}(): %{message}"));
SECTION("..:: PSM cbor features::..", "[cborfeatures]")
{
pappso::UiMonitorVoid monitor;
QFile cbor_file(
"/gorgone/pappso/data_extraction_pappso/sage_output/sage_output.cbor");
cbor_file.open(QIODevice::ReadOnly);
QFile fileods("test.ods");
OdsDocWriter writer(&fileods);
CborTest cbor_pappso(writer);
cbor_pappso.readCbor(&cbor_file, monitor);
// xic_writer.write(xic);
writer.close();
fileods.close();
}
SECTION("..:: PSM cbor features::..", "[cborfeatures]")
{
pappso::UiMonitorVoid monitor;
QFileInfo sage_json_file(
"/gorgone/pappso/moulon/users/Olivier/20250402_RD_mais_deepprot/sage/self/B73/results.json");
QFile sage_cbor_file("sage.cbor");
sage_cbor_file.open(QIODevice::WriteOnly);
pappso::cbor::CborStreamWriter writer(&sage_cbor_file);
pappso::cbor::psm::SageFileReader sage_file_reader(&monitor, &writer, sage_json_file);
sage_cbor_file.close();
}
}
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