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//
// File: test_peptidefragment.cpp
// Created by: Olivier Langella
// Created on: 9/3/2015
//
/*******************************************************************************
* Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
* Contributors:
* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
*implementation
******************************************************************************/
// ./tests/catch2-only-tests [peptidefragment] -s
#include <catch2/catch_test_macros.hpp>
#include <catch2/catch_approx.hpp>
#include <catch2/matchers/catch_matchers_vector.hpp>
#include <pappsomspp/core/pappsoexception.h>
#include <pappsomspp/core/mzrange.h>
#include <pappsomspp/core/peptide/peptidefragment.h>
#include <pappsomspp/core/peptide/peptidefragmention.h>
#include <iostream>
#include <QDebug>
#include <QString>
using namespace pappso;
using namespace std;
TEST_CASE("Peptide Fragment test suite.", "[peptidefragment]")
{
// Set the debugging message formatting pattern.
qSetMessagePattern(QString("%{file}@%{line}, %{function}(): %{message}"));
SECTION("..:: test Peptide Fragment ::..", "[peptidefragment]")
{
std::cout << std::endl << "..:: peptide fragment init ::.." << std::endl;
PeptideFragment pep_fragment(
std::make_shared<Peptide>("PEPTIDE"), PeptideDirection::Cter, 4);
REQUIRE(pep_fragment.getMass() == Catch::Approx(476.2118432465));
// SUCCESS
PeptideFragment pep_fragmentr(
std::make_shared<Peptide>("PEPTIDE"), PeptideDirection::Nter, 4);
REQUIRE(pep_fragmentr.getMass() == Catch::Approx(442.2063639429));
REQUIRE(pep_fragmentr.getMz(1) == Catch::Approx(443.2136404098));
REQUIRE(pep_fragmentr.getMz(2) == Catch::Approx(222.1104584383));
REQUIRE_NOTHROW(PeptideFragmentIon(
std::make_shared<PeptideFragment>(
std::make_shared<Peptide>("PEPTIDE"), PeptideDirection::Nter, 4),
Enums::PeptideIon::a));
REQUIRE_THROWS_AS(
PeptideFragmentIon(
std::make_shared<PeptideFragment>(
std::make_shared<Peptide>("PEPTIDE"), PeptideDirection::Nter, 4),
Enums::PeptideIon::y),
pappso::PappsoException);
}
}
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