File: changelog

package info (click to toggle)
libpappsomspp 0.8.15-1
  • links: PTS, VCS
  • area: main
  • in suites: bullseye
  • size: 4,796 kB
  • sloc: cpp: 38,336; python: 251; makefile: 26; sh: 6
file content (902 lines) | stat: -rw-r--r-- 27,312 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
libpappsomspp (0.8.15-1) unstable; urgency=low

  * New upstream version depending on libodsstream 0.7.11.

  * Disable make test for the moment.

 -- Filippo Rusconi <lopippo@debian.org>  Mon, 21 Dec 2020 18:05:07 +0100

libpappsomspp (0.8.14-1~buster+1) buster; urgency=medium

  * catch2 test suite is working
  * fix for standard exception compatibility

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 16 Dec 2020 14:00:13 +0100

libpappsomspp (0.8.13-1~buster+1) buster; urgency=medium

  * buster package

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 09 Dec 2020 15:36:32 +0100

libpappsomspp (0.8.13-1) unstable; urgency=low

  * New upstream with improvement in the XIC widgets.

 -- Filippo Rusconi <lopippo@debian.org>  Tue, 08 Dec 2020 16:29:03 +0100

libpappsomspp (0.8.12-1) UNRELEASED; urgency=low

  * New upstream version with new tests imported from mineXpert2
    (Catch2-based).

  * See below for changes between 0.8.8 and now.

 -- Filippo Rusconi <lopippo@debian.org>  Wed, 02 Dec 2020 14:28:10 +0100

libpappsomspp (0.8.11-1~buster+1) buster; urgency=medium

  * test added
  * bug fix in chargeDeconvolution filter
  * including catch2 framework

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 24 Nov 2020 10:08:59 +0100

libpappsomspp (0.8.10-1~buster+1) buster; urgency=medium

  * better tandemrun wrapper
  * better FilterSuiteString

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 18 Nov 2020 10:13:20 +0100

libpappsomspp (0.8.9-1~buster+1) buster; urgency=medium

  * rewritten TimsTOF mz calibration API
  * new FilterNameInterface to build Filter with strings
  * Thomas Renne added in the copyright debian notice

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 17 Nov 2020 13:31:57 +0100

libpappsomspp (0.8.8-1~buster+1) buster; urgency=medium

  * autoremove directory created for tandem run wrapper

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 02 Nov 2020 10:50:32 +0100

libpappsomspp (0.8.8-1) unstable; urgency=low

  * Add the possibility to recalculate the x,y,z axis scale to log10 or
    linear.

 -- Filippo Rusconi <lopippo@debian.org>  Wed, 21 Oct 2020 14:29:32 +0200

libpappsomspp (0.8.7-1~buster+1) buster; urgency=medium

  * make new builtin centroid interface available throught
    TimsMsRunReader
  * access to the underlying timdata pointer from TimsMsRunReader

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 15 Oct 2020 09:14:24 +0200

libpappsomspp (0.8.6-1~buster+1) buster; urgency=medium

  * builtin centroid for timsdata

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 14 Oct 2020 10:22:37 +0200

libpappsomspp (0.8.5-1~buster+1) buster; urgency=medium

  * more checks on file permissions for tandem run wrapper
  * charge deconvolution documented

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 09 Oct 2020 15:37:09 +0200

libpappsomspp (0.8.4-1~buster+1) buster; urgency=medium

  * new charge deconvolution filter

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 08 Oct 2020 10:52:40 +0200

libpappsomspp (0.8.3-1~buster+1) buster; urgency=medium

  * better msrunreader error messages
  * regorganised xic extractor to ensure that device is released

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 05 Oct 2020 10:19:53 +0200

libpappsomspp (0.8.2-1) buster; urgency=low

  [ Filippo Rusconi ]
  * Fixes in the minus combiners.

 -- Filippo Rusconi <lopippo@debian.org>  Wed, 23 Sep 2020 15:22:50 +0200

libpappsomspp (0.8.2-1~buster+1) buster; urgency=medium

  * msrunreader new api to release/acquire file pointers

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 25 Sep 2020 15:07:16 +0200

libpappsomspp (0.8.1-1) unstable; urgency=low

  * Fix bug due to not testing pointer against nullptr.

 -- Filippo Rusconi <lopippo@debian.org>  Mon, 21 Sep 2020 17:20:31 +0200

libpappsomspp (0.8.0-1) UNRELEASED; urgency=low

  * Add MSn support.

 -- Filippo Rusconi <lopippo@debian.org>  Mon, 21 Sep 2020 15:53:13 +0200

libpappsomspp (0.7.15-1) unstable; urgency=low

  * Attempt at fixing the test/test_massrange.cpp failure in i386 platforms.

 -- Filippo Rusconi <lopippo@debian.org>  Thu, 10 Sep 2020 18:07:48 +0200

libpappsomspp (0.7.14-1) unstable; urgency=low

  * Bug fix in DataPoint initialization using initialize().

 -- Filippo Rusconi <lopippo@debian.org>  Wed, 02 Sep 2020 10:23:48 +0200

libpappsomspp (0.7.14-1~buster+1) buster; urgency=medium

  * new filters : FilterComplementIonEnhancer, FilterGreatestYperWindow,
    FilterRemoveC13

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 27 Aug 2020 10:36:53 +0200

libpappsomspp (0.7.13-1) unstable; urgency=low

  * Another set of fixes for the faulty hard-coded path
    to the arch-specific system library directory.

 -- Filippo Rusconi <lopippo@debian.org>  Tue, 25 Aug 2020 13:13:48 +0200

libpappsomspp (0.7.12-1) unstable; urgency=low

  * Add new filter.

 -- Filippo Rusconi <lopippo@debian.org>  Mon, 24 Aug 2020 19:42:19 +0200

libpappsomspp (0.7.11-1) unstable; urgency=low

  * Fix problem with the shipped CMake-based config module file
    that was replaced with a find module file that has no
    path hard-coded in it. This should fix the failed builds on
    all the non x86_64 platforms.

 -- Filippo Rusconi <lopippo@debian.org>  Mon, 24 Aug 2020 15:45:21 +0200

libpappsomspp (0.7.11-1~buster+1) buster; urgency=medium

  * fix MassSpectrumWidget issue #3

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 17 Aug 2020 15:52:06 +0200

libpappsomspp (0.7.10-1~buster+1) buster; urgency=medium

  * buster package

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 22 Jul 2020 11:04:12 +0200

libpappsomspp (0.7.10-1) unstable; urgency=low

  * New upstream version. Added new widget class to represent mass data
    to a TIC|XIC chromatogram / drift spectrum color map as requested 
    by a user.

  * Updates to the packaging.

 -- Filippo Rusconi <lopippo@debian.org>  Thu, 09 Jul 2020 09:26:14 +0200

libpappsomspp (0.7.9-1~buster+1) buster; urgency=medium

  * new version for debian buster pappsodev

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 01 Jul 2020 18:49:18 +0200

libpappsomspp (0.7.8-1~buster+1) buster; urgency=medium

  * Debian buster backport

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 10 Jun 2020 17:04:05 +0200

libpappsomspp (0.7.8-1) unstable; urgency=low

  * New upstream that has the src/custompwiz source directory
    removed. This lib now build-depends on another package: 
    libpwizlite-dev.

  * d/copyright was updated to reflect the removal of the pwiz code 
    subset. Note that 3 files were kept, modified and relocated to
    the pappsomspp source tree. These were documented in d/copyright.

 -- Filippo Rusconi <lopippo@debian.org>  Thu, 04 Jun 2020 18:21:53 +0200

libpappsomspp (0.7.7-2) buster; urgency=medium

  * packaging problem fixed

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 19 May 2020 15:47:42 +0200

libpappsomspp (0.7.7-1) buster; urgency=medium

  * a lot of warnings fixed, better virtual destructors

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 18 May 2020 10:31:35 +0200

libpappsomspp (0.7.6-1) UNRELEASED; urgency=low

  * Fixes for the CMake build system.

 -- Filippo Rusconi <lopippo@debian.org>  Tue, 28 Apr 2020 18:03:15 +0200

libpappsomspp (0.7.5-1) unstable; urgency=low

  * New upstream version with fixex for Qt5 suffix 
    remnants within CMake stuff. Also, use better 
    name for the libs in the CMake dialect 
    (PAPPSOMSPP becomes PappsoMSpp).
  
 -- Filippo Rusconi <lopippo@debian.org>  Tue, 28 Apr 2020 16:35:52 +0200

libpappsomspp (0.7.4-1) unstable; urgency=low

  * New upstream version with MultiArch support.

  * General review of the packaging for Debian official repos upload.
 
  * Full copyright holders info in d/copyright.

 -- Filippo Rusconi <lopippo@debian.org>  Wed, 22 Apr 2020 10:14:26 +0200

libpappsomspp (0.7.3-2) buster; urgency=medium

  * no more global include directories in cmake to fix compilation
    problems

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 20 Apr 2020 09:08:55 +0200

libpappsomspp (0.7.3-1) buster; urgency=medium

  * new system to export symbols for Windows system
  * filter pseudo centroid

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 15 Apr 2020 08:02:58 +0200

libpappsomspp (0.7.2-3) buster; urgency=medium

  * important fix in timsframe polynomial resolution

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sun, 12 Apr 2020 16:57:34 +0200

libpappsomspp (0.7.2-2) buster; urgency=medium

  * fix pappsomsconfig generation and install

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 10 Apr 2020 19:36:54 +0200

libpappsomspp (0.7.2-1) buster; urgency=medium

  * reworked cmake stuff

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 10 Apr 2020 10:26:45 +0200

libpappsomspp (0.7.1-1) buster; urgency=medium

  * brand new library, including libpwiz to avoid compilation problems

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 08 Apr 2020 18:26:53 +0200

libpappsomspp (0.7.0-1) unstable; urgency=low

  * New packaging for testing Debian sid package creation.

 -- Filippo Rusconi <lopippo@debian.org>  Sat, 18 Jan 2020 21:05:02 +0100

libpappsomspp (0.6.5-1ubuntu1) bionic; urgency=medium

  * ubuntu 18.04 package 

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 10 Jan 2020 21:59:22 +0000

libpappsomspp (0.6.5-1) buster; urgency=medium

  * catch pwiz runtime error
  * set scans number for mzXML files

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 08 Jan 2020 20:50:05 +0100

libpappsomspp (0.6.4-1) buster; urgency=medium

  * a lot of development from Filippo Rusconi and Olivier Langella

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 19 Dec 2019 21:55:55 +0100

libpappsomspp (0.6.3-2) buster; urgency=medium

  * buster package

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 12 Sep 2019 15:23:58 +0200

libpappsomspp (0.6.3-1) stretch; urgency=medium

  * better BaseTracePlotWidget
  * new callback function to cancel msrunreader operation
  * new set of objects to handle Bruker's Tims TOF raw data natively
  * new MsRunReaders for Bruker's Tims TOF raw data (incomplete)

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 11 Sep 2019 09:57:57 +0200

libpappsomspp (0.6.2-1) buster; urgency=medium

  * first buster package
  * new BaseTracePlotWidget designed by Filippo Rusconi
  * FastaFileIndexer object
  * new function hasScanNumbers to know if an MSrun file can be accessed using scan numbers
    (true with Thermo, false with others)
  * peptide palindrome test
  * new code to compute natural isotope average
  * new constructor Trace(const MapTrace &map_trace) to build directly a Trace from MapTrace

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 16 Jul 2019 14:23:52 +0200

libpappsomspp (0.6.1-1) stretch; urgency=medium

  * huge refactoring with Filippo Rusconi
  * work in progress to define a tree structure and browse MS runs
  * new object and API to align MS runs using the MS2 method

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sat, 08 Jun 2019 19:29:09 +0200

libpappsomspp (0.6.0-1) stretch; urgency=medium

  * huge refactoring with Filippo Rusconi
  * all filters now available on a Trace object with a simple interface
  * peak detection as a new simple interface that can be used on any Trace
  * new feature to combine several traces or mass spectrum
  * mass spectrum scan numbers are deprecated in favor of a simple index of the scan
  * a new msfile accessor is available to handle multiple ms runs into a single file

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 23 May 2019 11:00:11 +0200

libpappsomspp (0.5.1-1) stretch; urgency=medium

  * better packaging
  * mutation support

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sat, 23 Mar 2019 07:27:31 +0100

libpappsomspp (0.5.0-1) stretch; urgency=medium

  * library entirely refactored with Filippo Rusconi
  * better documentation
  * coding standards available

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 06 Feb 2019 10:27:13 +0100

libpappsomspp (0.4.5-1) stretch; urgency=medium

  * new package with graphical bug fix

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 08 Jan 2019 15:49:32 +0100

libpappsomspp (0.4.4-5) stretch; urgency=medium

  * new pwiz library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 02 Jan 2019 21:24:24 +0100

libpappsomspp (0.4.4-3) stretch; urgency=medium

  * new qcustomplot library 2.0.1

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 11 Dec 2018 19:07:06 +0100

libpappsomspp (0.4.4-1) unstable; urgency=low

  * Packaging for first upload to the NEW queue.

 -- Filippo Rusconi <lopippo@debian.org>  Tue, 11 Dec 2018 11:06:34 +0100

libpappsomspp (0.4.3-2) stretch; urgency=medium

  * fix MGF precursor scan num empty

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 02 Nov 2018 13:44:50 +0100

libpappsomspp (0.4.3-1) stretch; urgency=medium

  * new buffered XIC reader based on pwiz library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 14 Aug 2018 14:27:31 +0200

libpappsomspp (0.4.2-1) stretch; urgency=medium

  * new API to read MSrun data

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sat, 02 Jun 2018 07:12:31 +0200

libpappsomspp (0.4.1-1) stretch; urgency=medium

  * new xic extractor based on slices and having a read buffer

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 24 May 2018 19:24:13 +0200

libpappsomspp (0.4.0-2) stretch; urgency=medium

  * fix out of range problem

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 17 May 2018 22:01:40 +0200

libpappsomspp (0.4.0-1) stretch; urgency=medium

  * new XIC extractor API and new dependency to proteowizard library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 16 May 2018 09:34:30 +0200

libpappsomspp (0.3.4-1) stretch; urgency=medium

  * API to draw peak borders

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sat, 14 Apr 2018 17:29:13 +0200

libpappsomspp (0.3.3-3) stretch; urgency=medium

  * fix cmake config module

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 12 Feb 2018 09:13:16 +0100

libpappsomspp (0.3.3-2) stretch; urgency=medium

  * using new libodsstream package

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sun, 11 Feb 2018 16:54:30 +0100

libpappsomspp (0.3.3-1) stretch; urgency=medium

  * better widgets

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 09 Feb 2018 15:57:58 +0100

libpappsomspp (0.3.2-1) stretch; urgency=medium

  * new XIC widget

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 18 Jan 2018 15:54:09 +0100

libpappsomspp (0.3.1-1) stretch; urgency=medium

  * new precision widget, better spectrum widget

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 10 Jan 2018 14:06:33 +0100

libpappsomspp (0.3.0-3) stretch; urgency=medium

  * avoid unneeded computations

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 03 Jan 2018 09:10:46 +0100

libpappsomspp (0.3.0-2) stretch; urgency=medium

  * isotope number instead of level

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 02 Jan 2018 17:00:11 +0100

libpappsomspp (0.3.0-1) stretch; urgency=medium

  * new PAPPSO widget package

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 02 Jan 2018 10:48:10 +0100

libpappsomspp (0.2.40-1) stretch; urgency=medium

  * faster grouping algorithm, refactoring

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sun, 17 Dec 2017 14:05:18 +0100

libpappsomspp (0.2.39-1) stretch; urgency=medium

  * better perf in grouping algorithm

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 15 Dec 2017 10:06:14 +0100

libpappsomspp (0.2.38-1) stretch; urgency=medium

  * centos7 compilation
  * fixed spectrum unique
  * better grouping performance

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sat, 21 Oct 2017 10:44:30 +0200

libpappsomspp (0.2.37-1) stretch; urgency=medium

  * new API for amino acid widlcards, new spectrum functions

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 18 Sep 2017 10:29:48 +0200

libpappsomspp (0.2.36-1) stretch; urgency=medium

  * new peptide functions

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 20 Jun 2017 21:53:35 +0200

libpappsomspp (0.2.35-1~stretch) stretch; urgency=medium

  * stretch pakage

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 11 May 2017 15:02:25 +0200

libpappsomspp (0.2.35-1) jessie; urgency=medium

  * new grouping API

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Wed, 26 Apr 2017 21:17:09 +0200

libpappsomspp (0.2.34-1) jessie; urgency=medium

  * new peptides API to handle modification removal

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Mon, 24 Apr 2017 09:03:01 +0200

libpappsomspp (0.2.33-1~stretch) stretch; urgency=medium

  * stretch package

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 18 Apr 2017 19:13:29 +0200

libpappsomspp (0.2.33-1) jessie; urgency=medium

  * better grouping, contaminant handler modified

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Tue, 18 Apr 2017 11:17:20 +0200

libpappsomspp (0.2.32-3~stretch) stretch; urgency=medium

  * stretch package

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sat, 18 Mar 2017 13:50:48 +0100

libpappsomspp (0.2.32-3) jessie; urgency=medium

  * better intensity ratio isotope determination

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Sat, 21 Jan 2017 12:13:24 +0100

libpappsomspp (0.2.32-2) stretch; urgency=medium

  * stretch package

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 21 Dec 2016 21:43:27 +0100

libpappsomspp (0.2.32-1) jessie; urgency=medium

  * better spectrum API

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Tue, 20 Dec 2016 17:01:04 +0100

libpappsomspp (0.2.31-2) stretch; urgency=medium

  * stretch package

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 19 Dec 2016 18:45:14 +0100

libpappsomspp (0.2.31-1) jessie; urgency=medium

  * new modification replacer in digestion API

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Wed, 07 Dec 2016 13:43:48 +0100

libpappsomspp (0.2.30-2) jessie; urgency=medium

  * digestion bug fixed

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Mon, 14 Nov 2016 21:52:40 +0100

libpappsomspp (0.2.30-1) jessie; urgency=medium

  * new digestion API

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Wed, 19 Oct 2016 21:50:47 +0200

libpappsomspp (0.2.29-1) jessie; urgency=medium

  * new peptide digestion pipeline

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Tue, 13 Sep 2016 13:55:11 +0200

libpappsomspp (0.2.28-1) jessie; urgency=medium

  * don't handle xic sink pointer lifetime

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Tue, 30 Aug 2016 17:12:30 +0200

libpappsomspp (0.2.27-1) jessie; urgency=medium

  * new ion types

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Thu, 25 Aug 2016 07:48:16 +0200

libpappsomspp (0.2.26-1) jessie; urgency=medium

  * new features in xtandem hyperscore computations

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Tue, 23 Aug 2016 10:06:12 +0200

libpappsomspp (0.2.25-1) jessie; urgency=medium

  * improving spectrum process for tandem hyperscore computation

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Fri, 19 Aug 2016 10:54:19 +0200

libpappsomspp (0.2.24-1) jessie; urgency=medium

  * new API to digest protein, new documentation

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Fri, 15 Jul 2016 16:01:40 +0200

libpappsomspp (0.2.23-1) jessie; urgency=medium

  * formula one

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Sun, 03 Jul 2016 23:20:42 +0200

libpappsomspp (0.2.22-1) jessie; urgency=medium

  * XML id added in msrun

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Sat, 25 Jun 2016 17:34:19 +0200

libpappsomspp (0.2.21-1) jessie; urgency=medium

  * computing PSI OBO modification masses using the diff formula

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Fri, 24 Jun 2016 21:53:34 +0200

libpappsomspp (0.2.20-1) jessie; urgency=medium

  * compute amino acid mass using the chemical formula

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Wed, 22 Jun 2016 21:47:53 +0200

libpappsomspp (0.2.19-1) jessie; urgency=medium

  * proton vs protium bug fixed

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Wed, 22 Jun 2016 16:25:05 +0200

libpappsomspp (0.2.18-1) jessie; urgency=medium

  * disctinction between proton and protium mass

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Wed, 22 Jun 2016 15:34:14 +0200

libpappsomspp (0.2.17-1) jessie; urgency=medium

  * amino acid precision goes now to 4 digits instead of previous 3
    digits

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Wed, 22 Jun 2016 13:48:34 +0200

libpappsomspp (0.2.16-1) jessie; urgency=medium

  * new syntax to limit modifications per site

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Sun, 12 Jun 2016 08:12:44 +0200

libpappsomspp (0.2.15-1) jessie; urgency=medium

  * new API to build peptide modification pipeline from strings

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Sat, 11 Jun 2016 22:15:09 +0200

libpappsomspp (0.2.14-1) jessie; urgency=medium

  * final fix into massrange

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Fri, 20 May 2016 22:31:50 +0200

libpappsomspp (0.2.13-1) jessie; urgency=medium

  * bug fix on PAPPSO mass range build with upper and lower precision

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Wed, 18 May 2016 15:25:20 +0200

libpappsomspp (0.2.12-1) jessie; urgency=medium

  * construct MassRange with upper and lower precisions

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Mon, 02 May 2016 16:40:31 +0200

libpappsomspp (0.2.11-1) jessie; urgency=medium

  * get highest and lowest mass of MassRange

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Thu, 28 Apr 2016 15:14:20 +0200

libpappsomspp (0.2.10-1) jessie; urgency=medium

  * peptide modification API modified, new Xic MS point distance
    function added

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Sat, 09 Apr 2016 22:52:33 +0200

libpappsomspp (0.2.9-1) jessie; urgency=medium

  * copy constructor bug fixed in Xic isotope

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Thu, 17 Mar 2016 08:46:10 +0100

libpappsomspp (0.2.8-2) jessie; urgency=medium

  * copy constructor added

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Mon, 14 Mar 2016 21:18:37 +0100

libpappsomspp (0.2.8-1) jessie; urgency=medium

  * Precision pointers, xic detection methods

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Thu, 10 Mar 2016 12:13:15 +0100

libpappsomspp (0.2.7-1) jessie; urgency=medium

  * combinations cached
  * parsing PSI MOD istope labels
  * semi tryptic digestion

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Mon, 08 Feb 2016 09:06:57 +0100

libpappsomspp (0.2.6-2) jessie; urgency=medium

  * unneeded move constructor removed

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Mon, 14 Dec 2015 22:26:54 +0100

libpappsomspp (0.2.6-1) jessie; urgency=medium

  * get ion list

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Sat, 28 Nov 2015 23:05:36 +0100

libpappsomspp (0.2.5-2) jessie; urgency=medium

  * make shared pointer on ion fragment list

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Sat, 28 Nov 2015 08:41:47 +0100

libpappsomspp (0.2.5-1) jessie; urgency=medium

  * new peptide functions

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Sat, 21 Nov 2015 15:08:43 +0100

libpappsomspp (0.2.4-2) jessie; urgency=medium

  * symbols update

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Sat, 07 Nov 2015 21:15:46 +0100

libpappsomspp (0.2.4-1) jessie; urgency=medium

  * better protein API

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Sat, 07 Nov 2015 15:29:19 +0100

libpappsomspp (0.2.3-1) jessie; urgency=medium

  * avoid resource name conflicts

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Fri, 23 Oct 2015 15:37:53 +0200

libpappsomspp (0.2.2-2) jessie; urgency=medium

  * U amino acid taken into account

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Fri, 23 Oct 2015 13:08:17 +0200

libpappsomspp (0.2.2-1) jessie; urgency=medium

  * XIC detection API

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Fri, 16 Oct 2015 14:12:09 +0200

libpappsomspp (0.2.0-2) jessie; urgency=medium

  * new peptide and spectrum API

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Sat, 03 Oct 2015 23:17:10 +0200

libpappsomspp (0.2.0-1) jessie; urgency=medium

  * new API to digest and modify peptides

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Wed, 30 Sep 2015 10:03:45 +0200

libpappsomspp (0.1.0-2) jessie; urgency=medium

  * better API to handle phospho loss

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Mon, 14 Sep 2015 19:34:50 +0200

libpappsomspp (0.1.0-1) jessie; urgency=medium

  * better MS fragment ion support

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Thu, 10 Sep 2015 22:32:02 +0200

libpappsomspp (0.0.4-3) jessie; urgency=medium

  * get PSI MOD name

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Fri, 04 Sep 2015 17:09:35 +0200

libpappsomspp (0.0.4-2) jessie; urgency=medium

  * new getter to access obo term list

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Fri, 04 Sep 2015 16:26:52 +0200

libpappsomspp (0.0.4-1) jessie; urgency=medium

  * new peptide parser using aa modifications

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Thu, 03 Sep 2015 14:29:53 +0200

libpappsomspp (0.0.3-3) jessie; urgency=medium

  * library informations added in debian package (symbols, shlibs)

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Wed, 19 Aug 2015 22:56:54 +0200

libpappsomspp (0.0.3-2) jessie; urgency=medium

  * little fix

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Wed, 19 Aug 2015 16:38:26 +0200

libpappsomspp (0.0.3-1) jessie; urgency=medium

  * grouping functions OK

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Tue, 18 Aug 2015 10:53:35 +0200

libpappsomspp (0.0.2-1) jessie; urgency=medium

  * first good package... I hope

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Fri, 12 Jun 2015 08:58:19 +0200

libpappsomspp (0.0.1-5) jessie; urgency=medium

  * fix package concurency problem

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Thu, 11 Jun 2015 15:26:37 +0200

libpappsomspp (0.0.1-4) jessie; urgency=medium

  * double Debian package for Qt4 and Qt5

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Thu, 11 Jun 2015 15:18:33 +0200

libpappsomspp (0.0.1-3) jessie; urgency=medium

  * cmake module added to dev package

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Fri, 29 May 2015 16:08:52 +0200

libpappsomspp (0.0.1-2) jessie; urgency=medium

  * first Debian Jessie package

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Fri, 29 May 2015 15:09:46 +0200

libpappsomspp (0.0.1-1) wheezy; urgency=low

  * first debian package

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Mon, 16 Mar 2015 14:06:18 +0100