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<HTML>
<HEAD>
<TITLE>Package edu.rit.compbio.seq</TITLE>
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<P>
Package edu.rit.compbio.seq
contains parallel programs
for biological sequence alignment.
<P>
The following programs search a protein sequence database
to find matches for a query protein sequence:
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<LI>
Class <A HREF="FindProteinSeq.html">FindProteinSeq</A>
<LI>
Class <A HREF="FindProteinHyb.html">FindProteinHyb</A>
<LI>
Class <A HREF="FindProteinHyb2.html">FindProteinHyb2</A>
</UL>
<P>
The following class encapsulates a protein sequence database;
it includes a main program that prepares a database index file
used by the above protein sequence database search programs:
<UL>
<LI>
Class <A HREF="ProteinDatabase.html">ProteinDatabase</A>
</UL>
<P>
The other classes are used by the above programs.
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