File: XYSeries.java

package info (click to toggle)
libpj-java 0.0~20150107%2Bdfsg-4
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, bullseye
  • size: 13,396 kB
  • sloc: java: 99,543; ansic: 987; sh: 153; xml: 26; makefile: 10; sed: 4
file content (400 lines) | stat: -rw-r--r-- 9,575 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
//******************************************************************************
//
// File:    XYSeries.java
// Package: edu.rit.numeric
// Unit:    Class edu.rit.numeric.XYSeries
//
// This Java source file is copyright (C) 2011 by Alan Kaminsky. All rights
// reserved. For further information, contact the author, Alan Kaminsky, at
// ark@cs.rit.edu.
//
// This Java source file is part of the Parallel Java Library ("PJ"). PJ is free
// software; you can redistribute it and/or modify it under the terms of the GNU
// General Public License as published by the Free Software Foundation; either
// version 3 of the License, or (at your option) any later version.
//
// PJ is distributed in the hope that it will be useful, but WITHOUT ANY
// WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
// A PARTICULAR PURPOSE. See the GNU General Public License for more details.
//
// Linking this library statically or dynamically with other modules is making a
// combined work based on this library. Thus, the terms and conditions of the
// GNU General Public License cover the whole combination.
//
// As a special exception, the copyright holders of this library give you
// permission to link this library with independent modules to produce an
// executable, regardless of the license terms of these independent modules, and
// to copy and distribute the resulting executable under terms of your choice,
// provided that you also meet, for each linked independent module, the terms
// and conditions of the license of that module. An independent module is a
// module which is not derived from or based on this library. If you modify this
// library, you may extend this exception to your version of the library, but
// you are not obligated to do so. If you do not wish to do so, delete this
// exception statement from your version.
//
// A copy of the GNU General Public License is provided in the file gpl.txt. You
// may also obtain a copy of the GNU General Public License on the World Wide
// Web at http://www.gnu.org/licenses/gpl.html.
//
//******************************************************************************

package edu.rit.numeric;

import java.io.PrintStream;
import java.io.PrintWriter;

/**
 * Class XYSeries is the abstract base class for a series of (<I>x,y</I>) pairs
 * of real values (type <TT>double</TT>).
 *
 * @author  Alan Kaminsky
 * @version 20-Jul-2011
 */
public abstract class XYSeries
	{

// Exported helper classes.

	/**
	 * Class XYSeries.Regression holds the results of a regression on an
	 * {@linkplain XYSeries}.
	 *
	 * @author  Alan Kaminsky
	 * @version 12-Jun-2007
	 */
	public static class Regression
		{
		/**
		 * Intercept <I>a</I>.
		 */
		public final double a;

		/**
		 * Slope <I>b</I>.
		 */
		public final double b;

		/**
		 * Correlation.
		 */
		public final double corr;

		/**
		 * Construct a new Regression object.
		 */
		private Regression
			(double a,
			 double b,
			 double corr)
			{
			this.a = a;
			this.b = b;
			this.corr = corr;
			}
		}

	/**
	 * Class XYSeries.XSeriesView provides a series view of the X values in an
	 * XY series.
	 *
	 * @author  Alan Kaminsky
	 * @version 12-Jun-2007
	 */
	private static class XSeriesView
		extends Series
		{
		private XYSeries outer;

		public XSeriesView
			(XYSeries outer)
			{
			this.outer = outer;
			}

		public int length()
			{
			return outer.length();
			}

		public double x
			(int i)
			{
			return outer.x (i);
			}
		}

	/**
	 * Class XYSeries.YSeriesView provides a series view of the Y values in an
	 * XY series.
	 *
	 * @author  Alan Kaminsky
	 * @version 12-Jun-2007
	 */
	private static class YSeriesView
		extends Series
		{
		private XYSeries outer;

		public YSeriesView
			(XYSeries outer)
			{
			this.outer = outer;
			}

		public int length()
			{
			return outer.length();
			}

		public double x
			(int i)
			{
			return outer.y (i);
			}
		}

// Exported constructors.

	/**
	 * Construct a new XY series.
	 */
	public XYSeries()
		{
		}

// Exported operations.

	/**
	 * Returns the number of values in this series.
	 *
	 * @return  Length.
	 */
	public abstract int length();

	/**
	 * Determine if this series is empty.
	 *
	 * @return  True if this series is empty (length = 0), false otherwise.
	 */
	public boolean isEmpty()
		{
		return length() == 0;
		}

	/**
	 * Returns the given X value in this series.
	 *
	 * @param  i  Index.
	 *
	 * @return  The X value in this series at index <TT>i</TT>.
	 *
	 * @exception  ArrayIndexOutOfBoundsException
	 *     (unchecked exception) Thrown if <TT>i</TT> is not in the range
	 *     <TT>0</TT> .. <TT>length()-1</TT>.
	 */
	public abstract double x
		(int i);

	/**
	 * Returns the given Y value in this series.
	 *
	 * @param  i  Index.
	 *
	 * @return  The Y value in this series at index <TT>i</TT>.
	 *
	 * @exception  ArrayIndexOutOfBoundsException
	 *     (unchecked exception) Thrown if <TT>i</TT> is not in the range
	 *     <TT>0</TT> .. <TT>length()-1</TT>.
	 */
	public abstract double y
		(int i);

	/**
	 * Returns the minimum X value in this series.
	 *
	 * @return  Minimum X value.
	 */
	public double minX()
		{
		int n = length();
		double result = Double.POSITIVE_INFINITY;
		for (int i = 0; i < n; ++ i) result = Math.min (result, x(i));
		return result;
		}

	/**
	 * Returns the maximum X value in this series.
	 *
	 * @return  Maximum X value.
	 */
	public double maxX()
		{
		int n = length();
		double result = Double.NEGATIVE_INFINITY;
		for (int i = 0; i < n; ++ i) result = Math.max (result, x(i));
		return result;
		}

	/**
	 * Returns the minimum Y value in this series.
	 *
	 * @return  Minimum Y value.
	 */
	public double minY()
		{
		int n = length();
		double result = Double.POSITIVE_INFINITY;
		for (int i = 0; i < n; ++ i) result = Math.min (result, y(i));
		return result;
		}

	/**
	 * Returns the maximum Y value in this series.
	 *
	 * @return  Maximum Y value.
	 */
	public double maxY()
		{
		int n = length();
		double result = Double.NEGATIVE_INFINITY;
		for (int i = 0; i < n; ++ i) result = Math.max (result, y(i));
		return result;
		}

	/**
	 * Returns the linear regression of the (<I>x,y</I>) values in this XY
	 * series. The linear function <I>y</I> = <I>a</I> + <I>bx</I> is fitted to
	 * the data. The return value is a {@linkplain Regression Regression} object
	 * containing the intercept <I>a,</I> the slope <I>b,</I> and the
	 * correlation, respectively.
	 * <P>
	 * <I>Note:</I> The returned object contains the regression of a
	 * <I>snapshot</I> of this series at the time <TT>linearRegression()</TT>
	 * was called. Changing the data in this series will <I>not</I> change the
	 * contents of the returned object.
	 *
	 * @return  Regression.
	 */
	public Regression linearRegression()
		{
		// Accumulate sums.
		int n = length();
		double sum_x = 0.0;
		double sum_y = 0.0;
		for (int i = 0; i < n; ++ i)
			{
			sum_x += x(i);
			sum_y += y(i);
			}

		// Compute means of X and Y.
		double mean_x = sum_x / n;
		double mean_y = sum_y / n;

		// Compute variances of X and Y.
		double xt;
		double yt;
		double sum_xt_sqr = 0.0;
		double sum_yt_sqr = 0.0;
		double sum_xt_yt  = 0.0;
		double b = 0.0;
		for (int i = 0; i < n; ++ i)
			{
			xt = x(i) - mean_x;
			yt = y(i) - mean_y;
			sum_xt_sqr += xt * xt;
			sum_yt_sqr += yt * yt;
			sum_xt_yt  += xt * yt;
			b += xt * y(i);
			}

		// Compute results.
		b /= sum_xt_sqr;
		double a = (sum_y - sum_x * b) / n;
		double corr = sum_xt_yt / (Math.sqrt (sum_xt_sqr * sum_yt_sqr) + TINY);
		return new Regression (a, b, corr);
		}

	private static final double TINY = 1.0e-20;

	/**
	 * Returns a {@linkplain Series} view of the X values in this XY series.
	 * <P>
	 * <I>Note:</I> The returned Series object is backed by this XY series
	 * object. Changing the contents of this XY series object will change the
	 * contents of the returned Series object.
	 *
	 * @return  Series of X values.
	 */
	public Series xSeries()
		{
		return new XSeriesView (this);
		}

	/**
	 * Returns a {@linkplain Series} view of the Y values in this XY series.
	 * <P>
	 * <I>Note:</I> The returned Series object is backed by this XY series
	 * object. Changing the contents of this XY series object will change the
	 * contents of the returned Series object.
	 *
	 * @return  Series of Y values.
	 */
	public Series ySeries()
		{
		return new YSeriesView (this);
		}

	/**
	 * Print this XY series on the standard output. Each line of output consists
	 * of the index, the <I>x</I> value, and the <I>y</I> value, separated by
	 * tabs.
	 */
	public void print()
		{
		print (System.out);
		}

	/**
	 * Print this XY series on the given print stream. Each line of output
	 * consists of the index, the <I>x</I> value, and the <I>y</I> value,
	 * separated by tabs.
	 *
	 * @param  theStream  Print stream.
	 */
	public void print
		(PrintStream theStream)
		{
		int n = length();
		for (int i = 0; i < n; ++ i)
			{
			theStream.print (i);
			theStream.print ('\t');
			theStream.print (x(i));
			theStream.print ('\t');
			theStream.println (y(i));
			}
		}

	/**
	 * Print this XY series on the given print writer. Each line of output
	 * consists of the index, the <I>x</I> value, and the <I>y</I> value,
	 * separated by tabs.
	 *
	 * @param  theWriter  Print writer.
	 */
	public void print
		(PrintWriter theWriter)
		{
		int n = length();
		for (int i = 0; i < n; ++ i)
			{
			theWriter.print (i);
			theWriter.print ('\t');
			theWriter.print (x(i));
			theWriter.print ('\t');
			theWriter.println (y(i));
			}
		}

	}