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# Copyright (C) 2015 Diego Darriba
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as
# published by the Free Software Foundation, either version 3 of the
# License, or (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Affero General Public License for more details.
#
# You should have received a copy of the GNU Affero General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
# Contact: Diego Darriba <Diego.Darriba@h-its.org>,
# Exelixis Lab, Heidelberg Instutute for Theoretical Studies
# Schloss-Wolfsbrunnenweg 35, D-69118 Heidelberg, Germany
CC = gcc
CFLAGS = -L. -g -O3 -Wall -std=c99
CLIBS = -lpll -lm
CFILES = $(shell find src -name '*.c' ! -name 'common.c')
OBJFILES = $(patsubst src/%.c, obj/%, $(CFILES))
OBJCOMMON = src/common.o
DATADIR = testdata
RESULTDIR = result
DEPFILES = worms16s.fas \
small.fas small.tree small.rooted.tree small.rooted.tip.tree \
246x4465.fas 246x4465.tree \
ribosomal_l5_pf00673.fas ribosomal_l5_pf00673.tree \
medium.fas medium.tree \
2000.fas 2000.tree \
200.fas 200.tree \
1000x5.dna.fas 1000.tree
REQFILES = $(patsubst %, $(DATADIR)/%, $(DEPFILES))
ASSETS = https://raw.githubusercontent.com/xflouris/assets/master/libpll
all: $(OBJCOMMON) $(OBJFILES) $(REQFILES)
@mkdir -p $(RESULTDIR)
$(DATADIR)/%:
@mkdir -p "$(@D)"
wget -O $@ $(ASSETS)/$@
obj/%: src/%.c $(DEPS)
@mkdir -p "$(@D)"
$(CC) $(CPPFLAGS) $(CFLAGS) -o $@ $< $(OBJCOMMON) $(CLIBS) $(LDFLAGS) -DDATADIR=\"$(DATADIR)\"
%.o: %.c
$(CC) $(CPPFLAGS) $(CFLAGS) -c -o $@ $< $(CLIBS) $(LDFLAGS) -DDATADIR=\"$(DATADIR)\"
clean:
rm -rf obj result/* $(OBJCOMMON)
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