File: psml.rnc

package info (click to toggle)
libpsml 2.1.0-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 3,048 kB
  • sloc: f90: 3,888; makefile: 211; pascal: 166; sh: 76
file content (253 lines) | stat: -rw-r--r-- 8,418 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
#
# Schema for PSML format
# RELAX-NG compact form. See: http://www.relaxng.org/compact-tutorial-20030326.htm
#
# This form can be processed by the jing/trang set of tools, available from
#   https://github.com/relaxng/jing-trang
#
# The 'jing' validator can work directly with this .rnc file (RELAX-NG compact form),
# and this is the preferred option.
#
# The 'trang' converter can be used to generate other schema forms, such as:
#
#     .rng (RELAX-NG xml form), .xsd (XML Schema)
#
# But note that some features of RELAX-NG cannot be completely represented by XML Schema
# schema files. In particular, in this file, the 'arbitrary attribute' idiom in the
# 'annotation' element is emulated.
#

default namespace = "http://siesta-project.org/ns/psml/1.1"

start = PSML

PSML =  element psml { 
            Root.Attributes         
          , Provenance+             # One or more provenance elements
          , PseudoAtomSpec          
          , Grid?                   # Optional top-level grid
          , ValenceCharge           
          , CoreCharge?             # Optional pseudo-core charge
		, (
		     (SemiLocalPotentials+ , PSOperator?)
		     |
		     (SemiLocalPotentials* , PSOperator )
		  )
          , PseudoWaveFunctions*          # Zero or more Pseudo Wavefunction groups
       }  

#
# Definitions of the above grammar symbols follow

#
Root.Attributes =  attribute energy_unit { "hartree" }
                 , attribute length_unit { "bohr" }
                 , attribute uuid { xsd:NMTOKEN }
                 , attribute version { xsd:decimal }

# =========
Provenance =  element provenance {
                attribute record-number { xsd:positiveInteger}?
                attribute creator { xsd:string }
              , attribute date { xsd:string }
      
              , Annotation?
	      , InputFile*    # zero or more input files
              }
	      
InputFile =  element input-file {
               attribute name { xsd:NMTOKEN }, # No spaces or commas allowed
               text
             }

# =========
PseudoAtomSpec =  element pseudo-atom-spec {    PseudoAtomSpec.Attributes
                                              , Annotation?
                                              , ExchangeCorrelation
		                              , ValenceConfiguration
                                              , CoreConfiguration?
                                           }
# =========
PseudoAtomSpec.Attributes = 
       attribute atomic-label { xsd:NMTOKEN },
       attribute atomic-number { xsd:double },
       attribute z-pseudo { xsd:double },
       attribute core-corrections { "yes" | "no" },
       attribute relativity { "no" | "scalar" | "dirac" },
       attribute spin-dft { "yes" | "no" }?,
       attribute flavor { xsd:string }?

# =========
ExchangeCorrelation =  element exchange-correlation {
                         Annotation?
                         , element libxc-info {
                              attribute number-of-functionals { xsd:positiveInteger },
                              LibxcFunctional+
                           }
                        }

LibxcFunctional =   element functional {
                      attribute id { xsd:positiveInteger },
                      attribute name { xsd:string },
                      attribute weight { xsd:double }?,

                      # allow canonical names and libxc-style symbols
	      
                      attribute type { "exchange" | "correlation" | "exchange-correlation" |
	                               "XC_EXCHANGE" | "XC_CORRELATION" |
		  	                  "XC_EXCHANGE_CORRELATION" }?
                    }

# =========
ValenceConfiguration =  element valence-configuration {
                          attribute total-valence-charge { xsd:double },
	                  Annotation?,
                          ValenceShell+
                        }

ValenceShell =   Shell

Shell =  element shell {
           attribute_l,
           attribute_n,
           attribute occupation { xsd:double },
           attribute occupation-up { xsd:double }?,
           attribute occupation-down { xsd:double }?
         }

# =========
CoreConfiguration =  element core-configuration {
                       attribute total-core-charge { xsd:double },
	               Annotation?,
		       CoreShell+
                     }

CoreShell =   Shell

# =========
ValenceCharge =  element valence-charge {
                   attribute total-charge { xsd:double },
                   attribute is-unscreening-charge { "yes" | "no" }?,
                   attribute rescaled-to-z-pseudo { "yes" | "no" }?,
                   Annotation?,
                   Radfunc
                 }  
    
# =========
CoreCharge =  element pseudocore-charge {
                attribute matching-radius { xsd:double }?,
                attribute number-of-continuous-derivatives { xsd:nonNegativeInteger }?,
                Annotation?,
                Radfunc
              }

# =========
SemiLocalPotentials =  element semilocal-potentials {
                         attribute_set,
                         attribute flavor  { xsd:string }?,
                         Annotation?,
			 Grid?,
                         Potential+
                        }

Potential =   element slps {
                attribute flavor { xsd:string }?,
                attribute_l,
                attribute_j ?,
                attribute_n,
                attribute rc { xsd:double },
		attribute eref { xsd:double }?,
                Radfunc
              }   

# =========
PSOperator =   (   LocalPotential            # Local potential
                 , NonLocalProjectors* )     # Zero or more fully nonlocal groups


LocalPotential =  element local-potential {
                    attribute type { xsd:string },
                    Annotation?,
                    Grid?,
                    Radfunc,
		    LocalCharge?  # Optional local-charge element
                  }
    
LocalCharge =  element local-charge {
	         Radfunc
	       }

# =========
NonLocalProjectors =  element nonlocal-projectors {
                        attribute_set,
                        Annotation?,
                        Grid?,
	                Projector+
                      }

Projector =   element proj {
                attribute ekb { xsd:double },
                attribute eref { xsd:double }?, 
                attribute_l,
                attribute_j ?,
                attribute seq { xsd:positiveInteger },
                attribute type { xsd:string },
                Radfunc
              }+

# =========
PseudoWaveFunctions =  element pseudo-wave-functions {
                         attribute_set,
                         Annotation?,
                         Grid?,
                         PseudoWf+
                       }

PseudoWf =  element pswf {
       	      attribute_l,
              attribute_j ?,
              attribute_n,
              attribute energy_level { xsd:double} ?,
              Radfunc
            }

# =========
Grid =  element grid {
          attribute npts { xsd:positiveInteger },
          Annotation?,
          element grid-data {
                 list { xsd:double+ }   # One or more floating point numbers
          }
        }
  
# =========
Radfunc =  element radfunc {
             Grid?,              # Optional grid element
             element data {      
               attribute npts { xsd:positiveInteger }?,
               list { xsd:double+ }       # One or more floating point numbers
             }
           }

#
# This is the way to leave the annotations
# as collections of one or more arbitrary attributes
#
# This RELAX NG idiom cannot be directly translated to W3C schema (xsd form),
# but a similar result could be obtained with the <any> and <anyAttribute> xsd elements
#
any_attribute = attribute * { text }
Annotation =  element annotation { any_attribute+  }

#
# Convenience enumeration definitions
#
attribute_l = attribute l { "s" | "p" | "d" | "f" | "g" }
attribute_n = attribute n { "1" | "2" | "3" | "4" | "5" | "6" | "7" | "8" | "9" }
attribute_j = attribute j { "0.5" | "1.5" | "2.5" | "3.5" | "4.5" }

attribute_set = attribute set { "non_relativistic" |
                                "scalar_relativistic" | "spin_orbit" | "lj" |
				"up" | "down" | "spin_average" | "spin_difference" |
				"user_extension1" | "user_extension2" }