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//
// $Id$
//
//
// Original author: Robert Burke <robert.burke@proteowizard.org>
//
// Copyright 2008 Spielberg Family Center for Applied Proteomics
// Cedars-Sinai Medical Center, Los Angeles, California 90048
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
//
#define PWIZ_SOURCE
#include "MSIHandler.hpp"
#include "pwiz/utility/misc/Std.hpp"
namespace pwiz {
namespace util {
MSIHandler::Record::Record(const std::vector<std::string>& fields)
{
scan = atol(fields.at(0).c_str());
time = atof(fields.at(1).c_str());
mz = atof(fields.at(2).c_str());
mass = atof(fields.at(3).c_str());
intensity = atof(fields.at(4).c_str());
charge = atol(fields.at(5).c_str());
chargeStates = atol(fields.at(6).c_str());
kl = atof(fields.at(7).c_str());
background = atof(fields.at(8).c_str());
median = atof(fields.at(9).c_str());
peaks = atol(fields.at(10).c_str());
scanFirst = atol(fields.at(11).c_str());
scanLast = atol(fields.at(12).c_str());
scanCount = atol(fields.at(13).c_str());
}
MSIHandler::Record::Record(const Record& r)
{
scan = r.scan;
time = r.time;
mz = r.mz;
mass = r.mass;
intensity = r.intensity;
charge = r.charge;
chargeStates = r.chargeStates;
kl = r.kl;
background = r.background;
median = r.median;
peaks = r.peaks;
scanFirst = r.scanFirst;
scanLast = r.scanLast;
scanCount = r.scanCount;
}
class MSIHandler::Impl
{
public:
Impl(){}
vector<MSIHandler::Record> records;
};
MSIHandler::MSIHandler()
: pimpl(new Impl())
{
}
bool MSIHandler::updateRecord(const std::vector<std::string>& fields)
{
bool result = true;
Record record(fields);
pimpl->records.push_back(record);
return result;
}
size_t MSIHandler::size() const
{
return pimpl->records.size();
}
MSIHandler::Record MSIHandler::record(size_t index) const
{
return pimpl->records.at(index);
}
MSIHandler::Record MSIHandler::lastRecord() const
{
return pimpl->records.at(pimpl->records.size()-1);
}
} // namespace pwiz
} // namespace utility
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