1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
|
//
// $Id$
//
//
// Original author: Robert Burke <robert.burke@proteowizard.org>
//
// Copyright 2008 Spielberg Family Center for Applied Proteomics
// Cedars-Sinai Medical Center, Los Angeles, California 90048
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
//
#ifndef _TABREADER_HPP_
#define _TABREADER_HPP_
#include "Export.hpp"
#include "boost/shared_ptr.hpp"
#include <string>
#include <vector>
#include <iostream>
namespace pwiz {
namespace util {
struct PWIZ_API_DECL TabHandler
{
virtual ~TabHandler() {}
virtual bool getHeaders() = 0;
virtual char useComment() const = 0;
virtual bool open() = 0;
virtual bool updateLine(const std::string& line) = 0;
virtual bool updateRecord(const std::vector<std::string>& fields) = 0;
virtual bool close() = 0;
};
class PWIZ_API_DECL DefaultTabHandler : public TabHandler
{
public:
DefaultTabHandler(bool need_headers = true,
char comment_char='#');
DefaultTabHandler(const DefaultTabHandler& c);
virtual ~DefaultTabHandler() {}
virtual bool getHeaders();
virtual char useComment() const;
virtual bool open();
virtual bool updateLine(const std::string& line);
virtual bool updateRecord(const std::vector<std::string>& fields);
virtual size_t columns() const;
virtual size_t getHeader(const std::string& name) const;
virtual std::string getHeader(size_t index) const;
virtual bool close();
protected:
class Impl;
boost::shared_ptr<Impl> pimpl;
};
class PWIZ_API_DECL VectorTabHandler : public DefaultTabHandler
{
public:
typedef std::vector< std::vector<std::string> >::const_iterator const_iterator;
typedef std::vector< std::vector<std::string> >::iterator iterator;
VectorTabHandler();
VectorTabHandler(const DefaultTabHandler& c);
virtual ~VectorTabHandler() {}
virtual const_iterator begin() const;
virtual const_iterator end() const;
};
class PWIZ_API_DECL TabReader
{
public:
TabReader();
virtual ~TabReader() {}
virtual void setHandler(TabHandler* handler);
virtual const TabHandler* getHandler();
virtual bool process(const char* filename);
//virtual const std::vector< std::vector<std::string> >& records();
private:
class Impl;
boost::shared_ptr<Impl> pimpl;
};
} // namespace pwiz
} // namespace utility
#endif // _TABREADER_HPP_
|
