1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
|
//
// $Id$
//
//
// Original author: Darren Kessner <darren@proteowizard.org>
//
// Copyright 2007 Spielberg Family Center for Applied Proteomics
// Cedars-Sinai Medical Center, Los Angeles, California 90048
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
//
#include "pwiz/data/msdata/MSDataFile.hpp"
#include "pwiz/data/msdata/Serializer_mzML.hpp"
#include "pwiz/data/msdata/Diff.hpp"
#include "pwiz/data/msdata/examples.hpp"
#include "pwiz/utility/misc/unit.hpp"
#include "pwiz/utility/misc/Std.hpp"
using namespace pwiz::data;
using namespace pwiz::msdata;
using namespace pwiz::util;
void test()
{
cout << "Hello, MSData!\n";
// create the MSData object in memory
MSData msd;
examples::initializeTiny(msd);
// write MSData object to a stream
ostringstream oss;
Serializer_mzML serializer;
serializer.write(oss, msd);
// read back into another object
MSData msd2;
shared_ptr<istream> iss(new istringstream(oss.str()));
serializer.read(iss, msd2);
// do a diff on the two objects
Diff<MSData, pwiz::msdata::DiffConfig> diff(msd, msd2);
unit_assert(!diff);
// write out mzML
string filename = "tiny.pwiz.mzML";
cout << "Writing file " << filename << endl;
MSDataFile::write(msd, filename);
// write out mzXML
filename = "tiny.pwiz.mzXML";
cout << "Writing file " << filename << endl;
MSDataFile::write(msd, filename, MSDataFile::Format_mzXML);
}
int main()
{
try
{
test();
cout << "\nhttps://github.com/ProteoWizard\n"
<< "support@proteowizard.org\n";
return 0;
}
catch (exception& e)
{
cerr << e.what() << endl;
}
catch (...)
{
cerr << "Caught unknown exception.\n";
}
return 1;
}
|
