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/*
* Copyright 2015 Kevin Murray <spam@kdmurray.id.au>
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
/*
* ============================================================================
*
* Filename: test_sequtil.c
*
* Description: Tests for the sequtil module
* License: GPLv3+
* Author: Kevin Murray, spam@kdmurray.id.au
*
* ============================================================================
*/
#include "tests.h"
#include <qes_sequtil.h>
static void
test_qes_sequtil_translate_codon (void *ptr)
{
size_t iii;
size_t jjj;
char *cdn = NULL;
char aa = 0;
(void) ptr;
for (iii = 0; iii < n_codons; iii++) {
aa = qes_sequtil_translate_codon(codon_list[iii]);
tt_assert_op_type(aa, ==, aa_list[iii], char, "%c");
}
tt_int_op(qes_sequtil_translate_codon("XACACA"), ==, -1);
tt_int_op(qes_sequtil_translate_codon("A"), ==, -1);
tt_int_op(qes_sequtil_translate_codon(NULL), ==, -1);
/* Try with mutations */
for (iii = 0; iii < n_codons; iii++) {
for (jjj = 0; jjj < 3; jjj++) {
cdn = strdup(codon_list[iii]);
cdn[jjj] = 'N';
aa = qes_sequtil_translate_codon(cdn);
tt_assert_op_type(aa, ==, 'X', char, "%c");
free(cdn);
cdn = NULL;
}
}
end:
if (cdn != NULL) free(cdn);
}
struct testcase_t qes_sequtil_tests[] = {
{ "qes_sequtil_translate_codon", test_qes_sequtil_translate_codon, 0, NULL, NULL},
END_OF_TESTCASES
};
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