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BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= query
(113 letters)
Database: big_80
7,170,017 sequences; 2,505,616,640 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
pdb|pdb|2vh3_B 212 8e-54
>pdb|pdb|2vh3_B
Length = 117
Score = 212 bits (539), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 109/113 (96%)
Query: 1 AXAXSFPPXEIPGSKECLAEALQKHQGFKKKSYALIXAYLNYKEDAENYERAAEDFDSAV 60
A A SFPP EIPGSKECLAEALQKHQGFKKKSYALI AYLNYKEDAENYERAAEDFDSAV
Query: 1 AXACSFPPXEIPGSKECLAEALQKHQGFKKKSYALICAYLNYKEDAENYERAAEDFDSAV 60
Query: 61 KXTGXKEGVDLHEGNPELIEEGFEKFLASLKIDRKALGSLXTLFQKLYAIPHN 113
K TG KEGVDLHEGNPELIEEGFEKFLASLKIDRKALGSL TLFQKLYAIPHN
Sbjct: 61 KCTGXKEGVDLHEGNPELIEEGFEKFLASLKIDRKALGSLCTLFQKLYAIPHN 113
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
pdb|pdb|2vh3_B 226 5e-58
Sequences not found previously or not previously below threshold:
CONVERGED!
>pdb|pdb|2vh3_B
Length = 117
Score = 226 bits (575), Expect = 5e-58, Method: Composition-based stats.
Identities = 109/113 (96%), Positives = 109/113 (96%)
Query: 1 AXAXSFPPXEIPGSKECLAEALQKHQGFKKKSYALIXAYLNYKEDAENYERAAEDFDSAV 60
A A SFPP EIPGSKECLAEALQKHQGFKKKSYALI AYLNYKEDAENYERAAEDFDSAV
Sbjct: 1 AXACSFPPXEIPGSKECLAEALQKHQGFKKKSYALICAYLNYKEDAENYERAAEDFDSAV 60
Query: 61 KXTGXKEGVDLHEGNPELIEEGFEKFLASLKIDRKALGSLXTLFQKLYAIPHN 113
K TG KEGVDLHEGNPELIEEGFEKFLASLKIDRKALGSL TLFQKLYAIPHN
Sbjct: 61 KCTGXKEGVDLHEGNPELIEEGFEKFLASLKIDRKALGSLCTLFQKLYAIPHN 113
Database: big_80
Posted date: Feb 6, 2012 9:39 AM
Number of letters in database: 999,999,843
Number of sequences in database: 1,100,691
Database: /mnt/project/rost_db/data/big/big_80.01
Posted date: Feb 6, 2012 9:42 AM
Number of letters in database: 999,999,792
Number of sequences in database: 2,641,400
Database: /mnt/project/rost_db/data/big/big_80.02
Posted date: Feb 6, 2012 9:44 AM
Number of letters in database: 505,617,005
Number of sequences in database: 3,427,926
Lambda K H
0.313 0.133 0.375
Lambda K H
0.267 0.0413 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 932,412,166
Number of Sequences: 7170017
Number of extensions: 30007572
Number of successful extensions: 53414
Number of sequences better than 1.0: 1
Number of HSP's better than 1.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53412
Number of HSP's gapped (non-prelim): 2
length of query: 113
length of database: 2,505,616,640
effective HSP length: 81
effective length of query: 32
effective length of database: 1,924,845,263
effective search space: 61595048416
effective search space used: 61595048416
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 82 (36.2 bits)
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