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#!/usr/bin/env python
##
## @file printModel.py
## @brief Prints some information about the top-level model
## @author Sarah Keating
## @author Ben Bornstein
## @author Michael Hucka
##
## <!--------------------------------------------------------------------------
## This sample program is distributed under a different license than the rest
## of libSBML. This program uses the open-source MIT license, as follows:
##
## Copyright (c) 2013-2014 by the California Institute of Technology
## (California, USA), the European Bioinformatics Institute (EMBL-EBI, UK)
## and the University of Heidelberg (Germany), with support from the National
## Institutes of Health (USA) under grant R01GM070923. All rights reserved.
##
## Permission is hereby granted, free of charge, to any person obtaining a
## copy of this software and associated documentation files (the "Software"),
## to deal in the Software without restriction, including without limitation
## the rights to use, copy, modify, merge, publish, distribute, sublicense,
## and/or sell copies of the Software, and to permit persons to whom the
## Software is furnished to do so, subject to the following conditions:
##
## The above copyright notice and this permission notice shall be included in
## all copies or substantial portions of the Software.
##
## THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
## IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
## FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
## THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
## LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
## FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
## DEALINGS IN THE SOFTWARE.
##
## Neither the name of the California Institute of Technology (Caltech), nor
## of the European Bioinformatics Institute (EMBL-EBI), nor of the University
## of Heidelberg, nor the names of any contributors, may be used to endorse
## or promote products derived from this software without specific prior
## written permission.
## ------------------------------------------------------------------------ -->
##
import sys
import os.path
from libsbml import *
def main (args):
"""Usage: printNotes filename
"""
if (len(args) != 2):
print("\n" + "Usage: printSBML filename" );
return 1;
filename = args[1];
document = readSBML(filename);
if (document.getNumErrors() > 0):
printLine("Encountered the following SBML errors:" );
document.printErrors();
return 1;
level = document.getLevel();
version = document.getVersion();
print("\n"
+ "File: " + filename
+ " (Level " + str(level) + ", version " + str(version) + ")" );
model = document.getModel();
if (model == None):
print("No model present." );
return 1;
idString = " id: "
if (level == 1):
idString = "name: "
id = "(empty)"
if (model.isSetId()):
id = model.getId()
print(" "
+ idString
+ id );
if (model.isSetSBOTerm()):
print(" model sboTerm: " + model.getSBOTerm() );
print("functionDefinitions: " + str(model.getNumFunctionDefinitions()) );
print(" unitDefinitions: " + str(model.getNumUnitDefinitions()) );
print(" compartmentTypes: " + str(model.getNumCompartmentTypes()) );
print(" specieTypes: " + str(model.getNumSpeciesTypes()) );
print(" compartments: " + str(model.getNumCompartments()) );
print(" species: " + str(model.getNumSpecies()) );
print(" parameters: " + str(model.getNumParameters()) );
print(" initialAssignments: " + str(model.getNumInitialAssignments()) );
print(" rules: " + str(model.getNumRules()) );
print(" constraints: " + str(model.getNumConstraints()) );
print(" reactions: " + str(model.getNumReactions()) );
print(" events: " + str(model.getNumEvents()) );
print("\n");
return 0;
if __name__ == '__main__':
main(sys.argv)
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