1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
|
dnl
dnl Filename : configure.ac
dnl Description : Run this file through autoconf to produce `configure'
dnl Author(s) : SBML Team <sbml-team@googlegroups.com>
dnl
dnl <!-------------------------------------------------------------------------
dnl This file is part of libSBML. Please visit http://sbml.org for more
dnl information about SBML, and the latest version of libSBML.
dnl
dnl Copyright (C) 2013-2017 jointly by the following organizations:
dnl 1. California Institute of Technology, Pasadena, CA, USA
dnl 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
dnl 3. University of Heidelberg, Heidelberg, Germany
dnl
dnl Copyright (C) 2009-2013 jointly by the following organizations:
dnl 1. California Institute of Technology, Pasadena, CA, USA
dnl 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
dnl
dnl Copyright (C) 2006-2008 by the California Institute of Technology,
dnl Pasadena, CA, USA
dnl
dnl Copyright (C) 2002-2005 jointly by the following organizations:
dnl 1. California Institute of Technology, Pasadena, CA, USA
dnl 2. Japan Science and Technology Agency, Japan
dnl
dnl This library is free software; you can redistribute it and/or modify it
dnl under the terms of the GNU Lesser General Public License as published by
dnl the Free Software Foundation. A copy of the license agreement is provided
dnl in the file named "LICENSE.txt" included with this software distribution
dnl and also available online as http://sbml.org/software/libsbml/license.html
dnl --------------------------------------------------------------------- -->*/
dnl ---------------------------------------------------------------------------
dnl Autoconf initialization.
dnl
dnl Bug reports are sent to sbml-team@cds.caltech.edu
dnl ---------------------------------------------------------------------------
m4_define(LIBSBML_VERSION, m4_esyscmd_s(cat VERSION.txt))
dnl The AC_PREREQ macro can come before AC_INIT (but it's the only one).
AC_PREREQ([2.62])
AC_INIT([libSBML],
[LIBSBML_VERSION],
[libsbml-team@googlegroups.com],
[libsbml],
[http://sbml.org/Software/libSBML])
AC_CONFIG_AUX_DIR(config)
AC_REVISION($Revision: 25690 $)
AC_CONFIG_SRCDIR(src/Makefile.in)
AC_CONFIG_HEADERS(src/sbml/common/libsbml-config-common.h)
AC_CONFIG_HEADERS(src/sbml/common/libsbml-package.h)
AC_CONFIG_HEADERS(src/sbml/common/libsbml-namespace.h)
LIBSBML_VERSION_NUMERIC=m4_esyscmd(cat VERSION.txt |\
awk -F'.' '{ printf("%d%02d%02d\n", $1, $2, $3) }')
AC_SUBST(LIBSBML_VERSION_NUMERIC)
LIBSBML_MAJOR_VERSION=m4_esyscmd(cat VERSION.txt |\
awk -F'.' '{ printf("%d\n", $1) }')
AC_SUBST(LIBSBML_MAJOR_VERSION)
LIBSBML_MINOR_VERSION=m4_esyscmd(cat VERSION.txt |\
awk -F'.' '{ printf("%d\n", $2) }')
AC_SUBST(LIBSBML_MINOR_VERSION)
LIBSBML_REVISION_VERSION=m4_esyscmd(cat VERSION.txt |\
awk -F'.' '{ printf("%d\n", $3) }')
AC_SUBST(LIBSBML_REVISION_VERSION)
LIBSBML_BETA_VERSION=m4_esyscmd(cat VERSION.txt |\
awk -F'\\-' '{ printf("%s\n", $2) }')
AC_SUBST(LIBSBML_BETA_VERSION)
dnl ---------------------------------------------------------------------------
dnl Command-line options
dnl ---------------------------------------------------------------------------
dnl [2007-06-25] This is not currently functioning and may never be again.
dnl AC_ARG_ENABLE([memory-tracing],
dnl AC_HELP_STRING([--enable-memory-tracing],
dnl [Enable memory tracing (default: disabled)]),
dnl [enable_tracing=$withval],
dnl [enable_tracing=no])
dnl if test "$enable_tracing" != no; then
dnl AC_DEFINE([TRACE_MEMORY], 1,
dnl [Define to 1 to enable primitive memory tracing.])
dnl fi
AC_ARG_ENABLE([cpp-namespace],
AS_HELP_STRING([--enable-cpp-namespace@<:@=ARG@:>@],
[enable C++ namespace for libsbml @<:@default=no@:>@]),
[enable_cpp_namespace=$enableval],
[enable_cpp_namespace=no])
if test "$enable_cpp_namespace" != no; then
AC_DEFINE([LIBSBML_USE_CPP_NAMESPACE], 1, [Define to 1 to enable C++ namespace.])
fi
dnl -------------------------------------------------------
dnl Extension plug-ins for SBML Level 3 packages.
dnl -------------------------------------------------------
AC_ARG_ENABLE([layout],
AS_HELP_STRING([--enable-layout@<:@=ARG@:>@],
[build support for SBML 'layout' @<:@default=no@:>@]),
[enable_layout=$enableval],
[enable_layout=no])
if test "$enable_layout" != no; then
AC_DEFINE([USE_LAYOUT], 1, [Define to 1 to build support for SBML 'layout'.])
AC_DEFINE([LIBSBML_HAS_PACKAGE_LAYOUT], 1, [Define to 1 to build support for SBML 'layout'.])
AC_SUBST(USE_LAYOUT, 1)
AC_SUBST(LIBSBML_HAS_PACKAGE_LAYOUT, 1)
fi
AC_ARG_ENABLE([render],
AS_HELP_STRING([--enable-render@<:@=ARG@:>@],
[build support for SBML 'render' @<:@default=no@:>@]),
[enable_render=$enableval],
[enable_render=no])
if test "$enable_render" != no; then
AC_DEFINE([USE_RENDER], 1, [Define to 1 to build support for SBML 'layout'.])
AC_DEFINE([LIBSBML_HAS_PACKAGE_RENDER], 1, [Define to 1 to build support for SBML 'layout'.])
AC_SUBST(USE_RENDER, 1)
AC_SUBST(LIBSBML_HAS_PACKAGE_RENDER, 1)
fi
AC_ARG_ENABLE([comp],
AS_HELP_STRING([--enable-comp@<:@=ARG@:>@],
[build support for SBML 'comp' @<:@default=no@:>@]),
[enable_comp=$enableval],
[enable_comp=no])
if test "$enable_comp" != no; then
AC_DEFINE([USE_COMP], 1, [Define to 1 to build support for SBML 'comp'.])
AC_DEFINE([LIBSBML_HAS_PACKAGE_COMP], 1, [Define to 1 to build support for SBML 'comp'.])
AC_SUBST(USE_COMP, 1)
AC_SUBST(LIBSBML_HAS_PACKAGE_COMP, 1)
fi
AC_ARG_ENABLE([fbc],
AS_HELP_STRING([--enable-fbc@<:@=ARG@:>@],
[build support for SBML 'fbc' @<:@default=no@:>@]),
[enable_fbc=$enableval],
[enable_fbc=no])
if test "$enable_fbc" != no; then
AC_DEFINE([USE_FBC], 1, [Define to 1 to build support for SBML 'fbc'.])
AC_DEFINE([LIBSBML_HAS_PACKAGE_FBC], 1, [Define to 1 to build support for SBML 'fbc'.])
AC_SUBST(USE_FBC, 1)
AC_SUBST(LIBSBML_HAS_PACKAGE_FBC, 1)
fi
AC_ARG_ENABLE([qual],
AS_HELP_STRING([--enable-qual@<:@=ARG@:>@],
[build support for SBML 'qual' @<:@default=no@:>@]),
[enable_qual=$enableval],
[enable_qual=no])
if test "$enable_qual" != no; then
AC_DEFINE([USE_QUAL], 1, [Define to 1 to build support for SBML 'qual'.])
AC_DEFINE([LIBSBML_HAS_PACKAGE_QUAL], 1, [Define to 1 to build support for SBML 'qual'.])
AC_SUBST(USE_QUAL, 1)
AC_SUBST(LIBSBML_HAS_PACKAGE_QUAL, 1)
fi
AC_ARG_ENABLE([groups],
AS_HELP_STRING([--enable-groups@<:@=ARG@:>@],
[build support for SBML 'groups' @<:@default=no@:>@]),
[enable_groups=$enableval],
[enable_groups=no])
if test "$enable_groups" != no; then
AC_DEFINE([USE_GROUPS], 1, [Define to 1 to build support for SBML 'groups'.])
AC_DEFINE([LIBSBML_HAS_PACKAGE_GROUPS], 1, [Define to 1 to build support for SBML 'groups'.])
AC_SUBST(USE_GROUPS, 1)
AC_SUBST(LIBSBML_HAS_PACKAGE_GROUPS, 1)
fi
AC_ARG_ENABLE([multi],
AS_HELP_STRING([--enable-multi@<:@=ARG@:>@],
[build support for SBML 'multi' @<:@default=no@:>@]),
[enable_multi=$enableval],
[enable_multi=no])
if test "$enable_multi" != no; then
AC_DEFINE([USE_MULTI], 1, [Define to 1 to build support for SBML 'multi'.])
AC_DEFINE([LIBSBML_HAS_PACKAGE_MULTI], 1, [Define to 1 to build support for SBML 'multi'.])
AC_SUBST(USE_MULTI, 1)
AC_SUBST(LIBSBML_HAS_PACKAGE_MULTI, 1)
fi
AC_ARG_ENABLE([l3v2extendedmath],
AS_HELP_STRING([--enable-l3v2extendedmath@<:@=ARG@:>@],
[build support for SBML 'l3v2extendedmath' @<:@default=no@:>@]),
[enable_l3v2extendedmath=$enableval],
[enable_l3v2extendedmath=no])
if test "$enable_l3v2extendedmath" != no; then
AC_DEFINE([USE_L3V2EXTENDEDMATH], 1, [Define to 1 to build support for SBML 'l3v2extendedmath'.])
AC_DEFINE([LIBSBML_HAS_PACKAGE_L3V2EXTENDEDMATH], 1, [Define to 1 to build support for SBML 'l3v2extendedmath'.])
AC_SUBST(USE_L3V2EXTENDEDMATH, 1)
AC_SUBST(LIBSBML_HAS_PACKAGE_L3V2EXTENDEDMATH, 1)
fi
dnl -------------------------------------------------------
dnl Other SBML L3 package variables
dnl -------------------------------------------------------
CONFIG_SBML_PACKAGE_VARS
dnl -------------------------------------------------------
dnl Compression
dnl -------------------------------------------------------
AC_ARG_ENABLE([compression],
AS_HELP_STRING([--enable-compression@<:@=ARG@:>@],
[enable file compression if possible @<:@default=yes@:>@]),
[enable_compression=$enableval],
[enable_compression=yes])
if test "$enable_compression" != no; then
AC_DEFINE([USE_COMPRESSION], 1, [Define to 1 to enable zlib/bzip2 file compression.])
AC_SUBST(USE_COMPRESSION, 1)
fi
dnl ---------------------------------------------------------------------------
dnl LIBSBML_SHARED_VERSION
dnl ---------------------------------------------------------------------------
AC_ARG_ENABLE([shared-version],
AS_HELP_STRING([--enable-shared-version@<:@=ARG@:>@],
[include version number into shared library @<:@default=yes@:>@]),
[enable_shared_version=$enableval],
[enable_shared_version=yes])
if test "$enable_shared_version" != no; then
AC_DEFINE([LIBSBML_SHARED_VERSION], 1, [Define to 1 to include the version number in the shared library.])
AC_SUBST(LIBSBML_SHARED_VERSION, 1)
fi
dnl ---------------------------------------------------------------------------
dnl LIBSBML_USE_STRICT_INCLUDES
dnl ---------------------------------------------------------------------------
AC_ARG_ENABLE([strict-includes],
AS_HELP_STRING([--enable-strict-includes@<:@=ARG@:>@],
[use strict .h inclusion rules @<:@default=no@:>@]),
[enable_use_strict_includes=$enableval],
[enable_use_strict_includes=no])
if test "$enable_use_strict_includes" != no; then
AC_DEFINE([LIBSBML_USE_STRICT_INCLUDES], 1, [Define to 1 to use strict include rules for header files.])
AC_SUBST(LIBSBML_USE_STRICT_INCLUDES, 1)
fi
dnl Other cmd-line options are defined in the individual .m4 files in the
dnl config/ subdirectory.
dnl ---------------------------------------------------------------------------
dnl Check host operating system, set some important flags accordingly, check
dnl for important configuration flags.
dnl ---------------------------------------------------------------------------
AC_CANONICAL_HOST
dnl CONFIG_BINARIES checks --enable-universal-binary, --enable-m32 and
dnl --enable-m64. This must be done before DOLT, CONFIG_PLATFORM,
dnl AC_PROG_LIBTOOL, CONFIG_PROG_MATLAB, and possibly others below, because it
dnl sets CFLAGS. A particularly important scenario is using --enable-m32 on
dnl a 64-bit platform, because without setting CFLAGS *before* attempting to
dnl configure libtool, the libtool script that's created ends up using 64-bit
dnl link paths and options. This leads to difficult-to-understand errors at
dnl compile/link-time.
CONFIG_BINARIES
CONFIG_PLATFORM
CONFIG_LDPATH
dnl ---------------------------------------------------------------------------
dnl Checks for various programs and packages.
dnl ---------------------------------------------------------------------------
AC_PROG_CXX
AC_PROG_CC
AC_PROG_CPP
AC_LIBTOOL_WIN32_DLL
AC_PROG_INSTALL
AC_PROG_MAKE_SET
AC_PATH_PROG([AUTOCONF],[autoconf],[autoconf])
AC_PATH_PROG([ACLOCAL],[aclocal],[aclocal])
dnl Check whether -Wno-long-double option is supported.
dnl
dnl (On MacOS X, compilation generates a warning about `long double'
dnl with Python and Ruby bindings).
saved_CPPFLAGS=$CPPFLAGS
CPPFLAGS="-Wno-long-double"
AC_MSG_CHECKING([whether -Wno-long-double is supported])
AC_COMPILE_IFELSE(
[AC_LANG_SOURCE([])],
[AC_SUBST(HAS_GCC_WNO_LONG_DOUBLE, 1)
AC_MSG_RESULT([yes])],
[AC_MSG_RESULT([no])]
)
CPPFLAGS=$saved_CPPFLAGS
dnl The Lisp language binding has been removed for the time being, because
dnl it no longer works in recent versions of libSBML.
CONFIG_PROG_PYTHON
CONFIG_PROG_PERL
CONFIG_PROG_JAVA(1.5.0)
CONFIG_PROG_MATLAB
CONFIG_PROG_OCTAVE(2.9.7,2.9.7)
CONFIG_PROG_RUBY
CONFIG_PROG_CSHARP
dnl Make sure to test for SWIG after all of the language binding tests,
dnl because the language binding tests sometimes cause swig to be required.
CONFIG_PROG_SWIG(2.0.0)
dnl Make sure to test doxygen *after* java, because there's a dependency
dnl in CONFIG_PROG_DOXYGEN on whether --with-java was also given.
CONFIG_PROG_DOXYGEN(1.8.8,1.8.11)
dnl Do this one last, because some earlier config options may end up changing
dnl things like CFLAGS, which in turn affects the libtool script that the
dnl following stesp create.
AC_PROG_LIBTOOL
AC_SUBST(LIBTOOL)
DOLT
dnl ---------------------------------------------------------------------------
dnl Checks for libraries.
dnl ---------------------------------------------------------------------------
AC_LANG(C)
AC_CHECK_LIB(m, isnan)
CONFIG_LIB_EXPAT(1.95.8)
CONFIG_LIB_XERCES
if test "$with_expat" = "no" -a "$with_xerces" = "no"; then
default_libxml="yes"
fi
CONFIG_LIB_LIBXML(2.6.16)
CONFIG_LIB_LIBCHECK(0.9.2)
CONFIG_LIB_ZLIB
CONFIG_LIB_BZ2
dnl ---------------------------------------------------------------------------
dnl Checks for header files.
dnl ---------------------------------------------------------------------------
AC_HEADER_STDC
AC_CHECK_HEADERS(errno.h)
AC_CHECK_HEADERS(math.h)
AC_CHECK_HEADERS(ieeefp.h)
dnl ---------------------------------------------------------------------------
dnl Checks for typedefs, structures, and compiler characteristics.
dnl ---------------------------------------------------------------------------
AC_C_BIGENDIAN
AC_C_CONST
AC_TYPE_SIZE_T
AC_EXEEXT
AC_OBJEXT
dnl ---------------------------------------------------------------------------
dnl Checks for Sun cc.
dnl ---------------------------------------------------------------------------
if ($CXX -V 2>&1 | grep 'Sun C++') >/dev/null 2>/dev/null; then
AC_SUBST(USE_SUN_CC, 1)
fi
dnl ---------------------------------------------------------------------------
dnl Miscellaneous
dnl ---------------------------------------------------------------------------
dnl Root directory
dnl Translate path for native Windows compilers for use with 'make check'
ROOT_DIR=`pwd`
case $host in
*-*-cygwin* | *-*-mingw*)
if (cygpath --mixed $ROOT_DIR) >/dev/null 2>/dev/null; then
ROOT_DIR=`cygpath --mixed $ROOT_DIR`
fi
# Extra files generated by some Windows compilers
EXTRA_CLEAN="*.stackdump *.exp *.lib"
;;
esac
dnl In order to allow certain Makefile tests, we define a variable that
dnl stores a list of options available to configure. This variable is
dnl added to by the configure options defined in config/ .m4 files.
AC_DEFINE(LIBSBML_OPTIONS)
AC_SUBST(LIBSBML_OPTIONS)
dnl ---------------------------------------------------------------------------
dnl Output
dnl ---------------------------------------------------------------------------
AC_CONFIG_FILES([config/makefile-common-vars.mk])
AC_CONFIG_FILES([config/lt_link_helper.sh], [chmod a+x config/lt_link_helper.sh])
AC_CONFIG_FILES([config/mkoctfile_wrapper.sh], [chmod a+x config/mkoctfile_wrapper.sh])
AC_CONFIG_FILES([config/chk_swig_version.sh], [chmod a+x config/chk_swig_version.sh])
AC_CONFIG_FILES([./Makefile])
AC_CONFIG_FILES([libsbml.spec])
AC_CONFIG_FILES([src/Makefile])
AC_CONFIG_FILES([src/sbml/common/Makefile])
AC_CONFIG_FILES([src/sbml/common/libsbml-version.h])
AC_CONFIG_FILES([src/bindings/Makefile])
AC_CONFIG_FILES([src/bindings/python/Makefile])
AC_CONFIG_FILES([src/bindings/python/setup.py])
AC_CONFIG_FILES([src/bindings/perl/Makefile])
AC_CONFIG_FILES([src/bindings/perl/Makefile.PL])
AC_CONFIG_FILES([src/bindings/matlab/Makefile])
AC_CONFIG_FILES([src/bindings/matlab/test/Makefile])
AC_CONFIG_FILES([src/bindings/octave/Makefile])
AC_CONFIG_FILES([src/bindings/octave/test/Makefile])
AC_CONFIG_FILES([src/bindings/java/Makefile])
AC_CONFIG_FILES([src/bindings/java/Manifest.txt])
dnl The Lisp language binding has been removed for the time being, because it
dnl no longer works in recent versions of libSBML.
dnl AC_CONFIG_FILES([src/bindings/java/Makefile])
AC_CONFIG_FILES([src/bindings/ruby/Makefile])
AC_CONFIG_FILES([src/bindings/csharp/Makefile])
AC_CONFIG_FILES([src/sbml/annotation/Makefile])
AC_CONFIG_FILES([src/sbml/annotation/test/Makefile])
AC_CONFIG_FILES([src/sbml/math/Makefile])
AC_CONFIG_FILES([src/sbml/math/test/Makefile])
AC_CONFIG_FILES([src/sbml/units/Makefile])
AC_CONFIG_FILES([src/sbml/units/test/Makefile])
AC_CONFIG_FILES([src/sbml/Makefile])
AC_CONFIG_FILES([src/sbml/test/Makefile])
AC_CONFIG_FILES([src/sbml/util/Makefile])
AC_CONFIG_FILES([src/sbml/util/test/Makefile])
AC_CONFIG_FILES([src/sbml/validator/Makefile])
AC_CONFIG_FILES([src/sbml/validator/constraints/Makefile])
AC_CONFIG_FILES([src/sbml/validator/test/Makefile])
AC_CONFIG_FILES([src/sbml/validator/test/test-data/Makefile])
AC_CONFIG_FILES([src/sbml/validator/test/test-data/sbml-general-consistency-constraints/Makefile])
AC_CONFIG_FILES([src/sbml/xml/Makefile])
AC_CONFIG_FILES([src/sbml/xml/test/Makefile])
AC_CONFIG_FILES([src/sbml/compress/Makefile])
AC_CONFIG_FILES([src/sbml/extension/Makefile])
AC_CONFIG_FILES([src/sbml/extension/test/Makefile])
AC_CONFIG_FILES([src/sbml/extension/RegisterExtensions.h])
AC_CONFIG_FILES([src/sbml/extension/RegisterExtensions.cxx])
AC_CONFIG_FILES([src/sbml/conversion/Makefile])
AC_CONFIG_FILES([src/sbml/conversion/test/Makefile])
AC_CONFIG_FILES([src/sbml/packages/Makefile])
if test -d src/sbml/packages/comp; then
if test "$enable_comp" != "no" ; then
AC_CONFIG_FILES([src/sbml/packages/comp/Makefile])
AC_CONFIG_FILES([src/sbml/packages/comp/common/Makefile])
AC_CONFIG_FILES([src/sbml/packages/comp/extension/Makefile])
AC_CONFIG_FILES([src/sbml/packages/comp/extension/test/Makefile])
AC_CONFIG_FILES([src/sbml/packages/comp/sbml/Makefile])
AC_CONFIG_FILES([src/sbml/packages/comp/sbml/test/Makefile])
AC_CONFIG_FILES([src/sbml/packages/comp/util/Makefile])
AC_CONFIG_FILES([src/sbml/packages/comp/util/test/Makefile])
AC_CONFIG_FILES([src/sbml/packages/comp/validator/Makefile])
AC_CONFIG_FILES([src/sbml/packages/comp/validator/constraints/Makefile])
AC_CONFIG_FILES([src/sbml/packages/comp/validator/test/Makefile])
AC_CONFIG_FILES([src/sbml/packages/comp/validator/test/test-data/Makefile])
AC_CONFIG_FILES([examples/c++/comp/Makefile])
AC_CONFIG_FILES([examples/c/comp/Makefile])
fi
fi
if test -d src/sbml/packages/fbc; then
if test "$enable_fbc" != "no" ; then
AC_CONFIG_FILES([src/sbml/packages/fbc/common/Makefile])
AC_CONFIG_FILES([src/sbml/packages/fbc/extension/Makefile])
AC_CONFIG_FILES([src/sbml/packages/fbc/extension/test/Makefile])
AC_CONFIG_FILES([src/sbml/packages/fbc/Makefile])
AC_CONFIG_FILES([src/sbml/packages/fbc/sbml/Makefile])
AC_CONFIG_FILES([src/sbml/packages/fbc/util/Makefile])
AC_CONFIG_FILES([src/sbml/packages/fbc/validator/constraints/Makefile])
AC_CONFIG_FILES([src/sbml/packages/fbc/validator/Makefile])
AC_CONFIG_FILES([src/sbml/packages/fbc/validator/test/Makefile])
AC_CONFIG_FILES([src/sbml/packages/fbc/validator/test/test-data/Makefile])
AC_CONFIG_FILES([examples/c++/fbc/Makefile])
fi
fi
AC_CONFIG_FILES([src/sbml/packages/layout/Makefile])
AC_CONFIG_FILES([src/sbml/packages/layout/common/Makefile])
AC_CONFIG_FILES([src/sbml/packages/layout/extension/Makefile])
AC_CONFIG_FILES([src/sbml/packages/layout/sbml/Makefile])
AC_CONFIG_FILES([src/sbml/packages/layout/sbml/test/Makefile])
AC_CONFIG_FILES([src/sbml/packages/layout/util/Makefile])
AC_CONFIG_FILES([src/sbml/packages/layout/validator/Makefile])
AC_CONFIG_FILES([src/sbml/packages/layout/validator/constraints/Makefile])
AC_CONFIG_FILES([src/sbml/packages/layout/validator/test/Makefile])
AC_CONFIG_FILES([src/sbml/packages/layout/validator/test/test-data/Makefile])
AC_CONFIG_FILES([src/sbml/packages/l3v2extendedmath/Makefile])
AC_CONFIG_FILES([src/sbml/packages/l3v2extendedmath/common/Makefile])
AC_CONFIG_FILES([src/sbml/packages/l3v2extendedmath/extension/Makefile])
AC_CONFIG_FILES([src/sbml/packages/l3v2extendedmath/extension/test/Makefile])
AC_CONFIG_FILES([src/sbml/packages/l3v2extendedmath/validator/Makefile])
AC_CONFIG_FILES([src/sbml/packages/l3v2extendedmath/validator/constraints/Makefile])
AC_CONFIG_FILES([src/sbml/packages/l3v2extendedmath/validator/test/Makefile])
AC_CONFIG_FILES([src/sbml/packages/l3v2extendedmath/validator/test/test-data/Makefile])
if test -d src/sbml/packages/qual; then
if test "$enable_qual" != "no" ; then
AC_CONFIG_FILES([src/sbml/packages/qual/Makefile])
AC_CONFIG_FILES([src/sbml/packages/qual/common/Makefile])
AC_CONFIG_FILES([src/sbml/packages/qual/extension/Makefile])
AC_CONFIG_FILES([src/sbml/packages/qual/sbml/Makefile])
AC_CONFIG_FILES([src/sbml/packages/qual/sbml/test/Makefile])
AC_CONFIG_FILES([src/sbml/packages/qual/validator/Makefile])
AC_CONFIG_FILES([src/sbml/packages/qual/validator/constraints/Makefile])
AC_CONFIG_FILES([src/sbml/packages/qual/validator/test/Makefile])
AC_CONFIG_FILES([src/sbml/packages/qual/validator/test/test-data/Makefile])
AC_CONFIG_FILES([examples/c++/qual/Makefile])
fi
fi
if test -d src/sbml/packages/multi; then
if test "$enable_multi" != "no" ; then
AC_CONFIG_FILES([src/sbml/packages/multi/Makefile])
AC_CONFIG_FILES([src/sbml/packages/multi/common/Makefile])
AC_CONFIG_FILES([src/sbml/packages/multi/extension/Makefile])
AC_CONFIG_FILES([src/sbml/packages/multi/sbml/Makefile])
AC_CONFIG_FILES([src/sbml/packages/multi/sbml/test/Makefile])
AC_CONFIG_FILES([src/sbml/packages/multi/validator/Makefile])
AC_CONFIG_FILES([src/sbml/packages/multi/validator/constraints/Makefile])
AC_CONFIG_FILES([src/sbml/packages/multi/validator/test/Makefile])
AC_CONFIG_FILES([examples/c++/multi/Makefile])
fi
fi
if test -d src/sbml/packages/render; then
if test "$enable_render" != "no" ; then
AC_CONFIG_FILES([src/sbml/packages/render/Makefile])
AC_CONFIG_FILES([src/sbml/packages/render/common/Makefile])
AC_CONFIG_FILES([src/sbml/packages/render/extension/Makefile])
AC_CONFIG_FILES([src/sbml/packages/render/sbml/Makefile])
AC_CONFIG_FILES([src/sbml/packages/render/sbml/test/Makefile])
AC_CONFIG_FILES([src/sbml/packages/render/util/Makefile])
AC_CONFIG_FILES([src/sbml/packages/render/validator/Makefile])
AC_CONFIG_FILES([src/sbml/packages/render/validator/constraints/Makefile])
AC_CONFIG_FILES([src/sbml/packages/render/validator/test/Makefile])
AC_CONFIG_FILES([src/sbml/packages/render/validator/test/test-data/Makefile])
AC_CONFIG_FILES([examples/c++/render/Makefile])
dnl AC_CONFIG_FILES([examples/c/render/Makefile])
fi
fi
AC_CONFIG_FILES([docs/Makefile])
AC_CONFIG_FILES([docs/index.html])
AC_CONFIG_FILES([docs/src/Makefile])
AC_CONFIG_FILES([docs/src/doxygen-config-c.txt])
AC_CONFIG_FILES([docs/src/doxygen-config-cpp.txt])
AC_CONFIG_FILES([docs/src/doxygen-config-csharp.txt])
AC_CONFIG_FILES([docs/src/doxygen-config-octave.txt])
AC_CONFIG_FILES([docs/src/doxygen-config-python.txt])
AC_CONFIG_FILES([docs/src/doxygen-config-perl.txt])
AC_CONFIG_FILES([docs/src/doxygen-config-matlab.txt])
AC_CONFIG_FILES([docs/src/common-text/libsbml-downloading.html])
AC_CONFIG_FILES([docs/src/common-text/libsbml-group-comp-intro.html])
AC_CONFIG_FILES([docs/src/common-text/libsbml-group-fbc-intro.html])
AC_CONFIG_FILES([docs/src/common-text/libsbml-group-groups-intro.html])
AC_CONFIG_FILES([docs/src/common-text/libsbml-group-layout-intro.html])
AC_CONFIG_FILES([docs/src/common-text/libsbml-group-multi-intro.html])
AC_CONFIG_FILES([docs/src/common-text/libsbml-group-qual-intro.html])
AC_CONFIG_FILES([docs/src/common-text/libsbml-group-render-intro.html])
AC_CONFIG_FILES([docs/src/common-text/libsbml-installation.html])
AC_CONFIG_FILES([docs/src/common-text/libsbml-version.html],
[tr -d '\n' < docs/src/common-text/libsbml-version.html > libsbmlversiontmp;
mv libsbmlversiontmp docs/src/common-text/libsbml-version.html])
AC_CONFIG_FILES([docs/src/common-text/sbml-specifications-table.html])
AC_CONFIG_FILES([docs/src/java-substitutions/libsbmlConstants.java])
AC_CONFIG_FILES([examples/c/Makefile])
AC_CONFIG_FILES([examples/c++/Makefile])
AC_CONFIG_FILES([examples/java/Makefile])
AC_CONFIG_FILES([examples/csharp/Makefile])
if test "$enable_layout" != "no" ; then
AC_CONFIG_FILES([examples/c++/layout/Makefile])
fi
if test -d dev; then
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/experimental/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/experimental/binaries/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/experimental/binaries/linux/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/experimental/binaries/linux/R_interface/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/experimental/binaries/macos/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/experimental/binaries/macos/R_interface/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/experimental/binaries/windows/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/experimental/binaries/windows/python/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/experimental/binaries/windows/R_interface/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/experimental/source/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/experimental/source/R_interface/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/linux/32-bit/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/linux/32-bit/R_interface/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/linux/32-bit/R_interface/binary-package/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/linux/32-bit/R_interface/source-package/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/linux/32-bit/MATLAB_interface/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/linux/64-bit/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/linux/64-bit/R_interface/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/linux/64-bit/R_interface/binary-package/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/linux/64-bit/R_interface/source-package/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/linux/64-bit/MATLAB_interface/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/linux/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/macos/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/macos/R_interface/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/macos/R_interface/binary-package/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/macos/R_interface/source-package/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/macos/MATLAB_interface/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/windows/32-bit/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/windows/32-bit/python/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/windows/32-bit/R_interface/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/windows/32-bit/MATLAB_interface/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/windows/64-bit/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/windows/64-bit/python/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/windows/64-bit/R_interface/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/windows/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/windows/64-bit/MATLAB_interface/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/MATLAB_interface/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-downloads-new-dir-struct/stable/R_interface/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-experimental-release-downloads/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-experimental-release-downloads/source/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-experimental-release-downloads/source/accepted-packages/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-experimental-release-downloads/source/beta-packages/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-experimental-release-downloads/source/R_interface/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-experimental-release-downloads/binaries/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-experimental-release-downloads/binaries/linux/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-experimental-release-downloads/binaries/mac_osx/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-experimental-release-downloads/binaries/windows/R_interface/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-experimental-release-downloads/binaries/windows/python/README.md])
AC_CONFIG_FILES([dev/misc-files/readmes-for-experimental-release-downloads/binaries/windows/README.md])
fi
dnl ---------------------------------------------------------------------------
dnl package system files that include the layout package
dnl ---------------------------------------------------------------------------
AC_CONFIG_FILES([src/bindings/csharp/local-downcast-astplugins.i])
AC_CONFIG_FILES([src/bindings/csharp/local-downcast-extension.i])
AC_CONFIG_FILES([src/bindings/csharp/local-downcast-namespaces.i])
AC_CONFIG_FILES([src/bindings/csharp/local-downcast-converters.i])
AC_CONFIG_FILES([src/bindings/csharp/local-packages.i])
AC_CONFIG_FILES([src/bindings/java/local-downcast-astplugins.i])
AC_CONFIG_FILES([src/bindings/java/local-downcast-extension.i])
AC_CONFIG_FILES([src/bindings/java/local-downcast-namespaces.i])
AC_CONFIG_FILES([src/bindings/java/local-downcast-converters.i])
AC_CONFIG_FILES([src/bindings/java/local-packages.i])
AC_CONFIG_FILES([src/bindings/perl/local-downcast.cpp])
AC_CONFIG_FILES([src/bindings/perl/local-downcast-astplugins.cpp])
AC_CONFIG_FILES([src/bindings/perl/local-downcast-extension.cpp])
AC_CONFIG_FILES([src/bindings/perl/local-downcast-namespaces.cpp])
AC_CONFIG_FILES([src/bindings/perl/local-downcast-converters.cpp])
AC_CONFIG_FILES([src/bindings/perl/local-downcast-plugins.cpp])
AC_CONFIG_FILES([src/bindings/perl/local-packages.i])
AC_CONFIG_FILES([src/bindings/python/local-downcast.cpp])
AC_CONFIG_FILES([src/bindings/python/local-downcast-astplugins.cpp])
AC_CONFIG_FILES([src/bindings/python/local-downcast-extension.cpp])
AC_CONFIG_FILES([src/bindings/python/local-downcast-namespaces.cpp])
AC_CONFIG_FILES([src/bindings/python/local-downcast-converters.cpp])
AC_CONFIG_FILES([src/bindings/python/local-downcast-plugins.cpp])
AC_CONFIG_FILES([src/bindings/python/local-packages.i])
AC_CONFIG_FILES([src/bindings/ruby/local-downcast.cpp])
AC_CONFIG_FILES([src/bindings/ruby/local-downcast-astplugins.cpp])
AC_CONFIG_FILES([src/bindings/ruby/local-downcast-extension.cpp])
AC_CONFIG_FILES([src/bindings/ruby/local-downcast-namespaces.cpp])
AC_CONFIG_FILES([src/bindings/ruby/local-downcast-converters.cpp])
AC_CONFIG_FILES([src/bindings/ruby/local-downcast-plugins.cpp])
AC_CONFIG_FILES([src/bindings/ruby/local-packages.i])
AC_CONFIG_FILES([src/bindings/swig/libsbml-packages.h])
AC_CONFIG_FILES([src/bindings/swig/libsbml-packages.i])
dnl ---------------------------------------------------------------------------
AC_CONFIG_FILES([macosx/Makefile])
AC_CONFIG_FILES([macosx/build.sh], [chmod a+x macosx/build.sh])
AC_CONFIG_FILES([macosx/resources/package-intro.txt])
AC_CONFIG_FILES([macosx/resources/package-readme.txt])
AC_CONFIG_FILES([macosx/libsbml-package.pmdoc/01local-contents.xml])
AC_CONFIG_FILES([macosx/libsbml-package.pmdoc/01local.xml])
AC_CONFIG_FILES([macosx/libsbml-package.pmdoc/index.xml])
AC_OUTPUT
dnl ---------------------------------------------------------------------------
dnl Inform users of settings
dnl ---------------------------------------------------------------------------
dnl Gather up the values of the flags into one set of variables for easier
dnl printing below.
if test "$with_expat" != "no"; then
xml_library="Expat"
xml_cppflags=$EXPAT_CPPFLAGS
xml_ldflags=$EXPAT_LDFLAGS
xml_libs=$EXPAT_LIBS
elif test "$with_libxml" != "no" -o "$default_libxml" = "yes"; then
xml_library="libxml2"
xml_cppflags=$LIBXML_CPPFLAGS
xml_ldflags=$LIBXML_LDFLAGS
xml_libs=$LIBXML_LIBS
else
xml_library="Xerces-C++"
xml_cppflags=$XERCES_CPPFLAGS
xml_ldflags=$XERCES_LDFLAGS
xml_libs=$XERCES_LIBS
fi
dnl Simple helper functions used below.
print_whitespace()
{
i=$1
if test -n "$i"; then
while expr $i \> 0 > /dev/null
do
i=`expr $i - 1`; printf ' '
done
fi
}
print_flag()
{
if test -n "$2" -a "$2" != "no"; then
i=`expr 13 - ${#1}`
printf " Using $1 with path "
print_whitespace $i
if test -n "$4"; then
/bin/echo -n "= $3"
else
echo "= $3"
fi
fi
dnl
dnl If there's a 4th arg, print it after everything else on the line.
dnl
if test -n "$4"; then
echo " ($4)"
fi
}
echo ""
echo "----------------------------------------------------------------------"
echo "${PACKAGE_NAME} version ${PACKAGE_VERSION}"
echo "----------------------------------------------------------------------"
echo ""
echo "More information and the latest version are available online at"
echo "http://sbml.org/Software/libSBML"
echo ""
echo "Please report problems using the issue tracker at"
echo "http://sbml.org/software/libsbml/issue-tracker"
echo ""
echo "To contact the developers directly, email libsbml-team@googlegroups.com"
echo ""
echo "Configured on host \"`hostname`\""
echo " host type = $HOST_TYPE"
echo " host vendor = $host_vendor"
echo " host operating system = $host_os"
echo " host CPU architecture = $host_cpu"
echo ""
echo "General build flags:"
echo " CC = $CC"
echo " CXX = $CXX"
echo " CPPFLAGS = $CPPFLAGS $ZLIB_CPPFLAGS $BZ2_CPPFLAGS"
echo " CFLAGS = $CFLAGS"
echo " CFLAGS_ARCH = $CFLAGS_ARCH"
echo " CXXFLAGS = $CXXFLAGS"
echo " CXXFLAGS_ARCH = $CXXFLAGS_ARCH"
echo " LDFLAGS = $LDFLAGS $ZLIB_LDFLAGS $BZ2_LDFLAGS"
echo " LDFLAGS_ARCH = $LDFLAGS_ARCH"
echo " LIBS = $LIBS $ZLIB_LIBS $BZ2_LIBS"
echo ""
echo "XML parser library configuration:"
echo " XML library = $xml_library"
echo " CPPFLAGS for XML = $xml_cppflags"
echo " LDFLAGS for XML = $xml_ldflags"
echo " LIBS for XML = $xml_libs"
if test -n "$XML2_CONFIG"; then
echo " XML2_CONFIG = $XML2_CONFIG"
fi
echo ""
echo "Other ${PACKAGE_NAME} configuration settings:"
echo " Installation \$prefix = $prefix"
print_flag "libcheck" $with_libcheck $with_check
print_flag "SWIG" $with_swig $SWIG
print_flag "doxygen" $with_doxygen $DOXYGEN
print_flag "Java" $with_java $JAVA
print_flag "Python" $with_python $PYTHON
print_flag "Perl" $with_perl $PERL
print_flag "MATLAB" $with_matlab $MATLAB
print_flag "Octave" $with_octave $OCTAVE
print_flag "Asdf" $EXT_ASDF $ASDF
print_flag "UFFI" $EXT_UFFI $UFFI
print_flag "Ruby" $with_ruby $RUBY
print_flag "CSharp" $with_csharp $CSHARP_CILINTERPRETER
print_flag "zlib" $with_zlib $with_zlib
print_flag "bzip2" $with_bzip2 $with_bzip2
if test "$enable_cpp_namespace" != "no" ; then
echo " Using C++ namespace for libSBML (libsbml) = yes"
fi
echo ""
echo "Support for SBML packages:"
if test "$enable_comp" != "no" ; then
echo " SBML 'comp' = $enable_comp"
fi
if test "$enable_fbc" != "no" ; then
echo " SBML 'fbc' = $enable_fbc"
fi
if test "$enable_groups" != "no" ; then
echo " SBML 'groups' = $enable_groups"
fi
if test "$enable_multi" != "no" ; then
echo " SBML 'multi' = $enable_multi"
fi
if test "$enable_layout" != "no" ; then
echo " SBML 'layout' = $enable_layout"
fi
if test "$enable_render" != "no" ; then
echo " SBML 'render' = $enable_render"
fi
if test "$enable_qual" != "no" ; then
echo " SBML 'qual' = $enable_qual"
fi
if test "$enable_l3v2extendedmath" != "no" ; then
echo " SBML 'l3v2extendedmath' = $enable_l3v2extendedmath"
fi
echo ""
echo "Other potentially important settings:"
if test "$enable_univbinary" != "no"; then
echo " Building libSBML as MacOS universal binary."
fi
if test "$with_zlib" != "no"; then
/bin/echo -n " Compression support is enabled for .zip"
if test "$with_bzip2" != "no"; then
echo ", .gz and .bz2 files"
else
echo " and .gz files"
fi
elif test "$with_bzip2" != "no"; then
echo " Compression support is enabled for .bz2 files"
fi
if test "$HOST_TYPE" = "darwin"; then
echo " Value of \$DYLD_LIBRARY_PATH = $DYLD_LIBRARY_PATH"
else
echo " Value of \$LD_LIBRARY_PATH = $LD_LIBRARY_PATH"
fi
if test -n "$with_java" -a "$with_java" != "no"; then
echo " Value of \$CLASSPATH for Java = $CLASSPATH"
fi
if test -n "$with_csharp" -a "$with_csharp" != "no"; then
echo " Using CSharp compiler = $CSHARP_COMPILER"
fi
dnl Print these warnings at the end so they're less likely to be overlooked.
if test "$with_zlib" = no -a "$with_bzip2" = no; then
echo ""
echo "Warning: reading/writing compressed SBML in this copy of libSBML"
echo "is not supported or has not been enabled. If this was not your"
echo "intention, please check the --with-zlib, -with-bzip2, and/or"
echo "--enable-compression options."
echo ""
elif test "$with_zlib" = no; then
echo ""
echo "Warning: reading/writing compressed SBML in .gz and .zip format"
echo "in this copy of libSBML is not supported or has been disabled."
echo "If this was not your intention, please check the --with-zlib"
echo "option."
echo ""
elif test "$with_bzip2" = no; then
echo ""
echo "Warning: reading/writing compressed SBML in .bz2 format in"
echo "this copy of libSBML is not supported or has been disabled."
echo "If this was not your intention, please check the --with-bzip2"
echo "option."
echo ""
fi
dnl Temporarily unavailable anyway, so skip this for now:
dnl echo " enable memory tracing? = $enable_tracing"
echo "----------------------------------------------------------------------"
echo ""
|
