1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226
|
/**
* \file FormulaGraphvizFormatter.h
* \brief Formats an AST formula tree as a dot directed graph
* \author Sarah Keating
*
* <!--------------------------------------------------------------------------
* This sample program is distributed under a different license than the rest
* of libSBML. This program uses the open-source MIT license, as follows:
*
* Copyright (c) 2013-2018 by the California Institute of Technology
* (California, USA), the European Bioinformatics Institute (EMBL-EBI, UK)
* and the University of Heidelberg (Germany), with support from the National
* Institutes of Health (USA) under grant R01GM070923. All rights reserved.
*
* Permission is hereby granted, free of charge, to any person obtaining a
* copy of this software and associated documentation files (the "Software"),
* to deal in the Software without restriction, including without limitation
* the rights to use, copy, modify, merge, publish, distribute, sublicense,
* and/or sell copies of the Software, and to permit persons to whom the
* Software is furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
* THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
* DEALINGS IN THE SOFTWARE.
*
* Neither the name of the California Institute of Technology (Caltech), nor
* of the European Bioinformatics Institute (EMBL-EBI), nor of the University
* of Heidelberg, nor the names of any contributors, may be used to endorse
* or promote products derived from this software without specific prior
* written permission.
* ------------------------------------------------------------------------ -->
*/
#ifndef FormulaGraphvizFormatter_h
#define FormulaGraphvizFormatter_h
#include "sbml/common/extern.h"
#include "sbml/util/StringBuffer.h"
#include "sbml/math/ASTNode.h"
BEGIN_C_DECLS
/**
* @return the given formula AST as a directed graph. The caller
* owns the returned string and is responsible for freeing it.
*/
char *
SBML_formulaToDot (const ASTNode_t *tree);
#ifndef SWIG
/**
* @return true (non-zero) if the given ASTNode is to formatted as a
* function.
*/
int
FormulaGraphvizFormatter_isFunction (const ASTNode_t *node);
/**
* Formats the given ASTNode as a directed graph token and returns the result as
* a string.
*/
char *
FormulaGraphvizFormatter_format (const ASTNode_t *node);
/**
* Since graphviz will interpret identical names as referring to
* the same node presentation-wise it is better if each function node
* has a unique name.
*
* Returns the name with the name of the first child
* prepended
*
* THIS COULD BE DONE BETTER
*/
char *
FormulaGraphvizFormatter_getUniqueName (const ASTNode_t *node);
/**
* Formats the given ASTNode as a directed graph function name and returns the
* result as a string.
*/
char *
FormulaGraphvizFormatter_formatFunction (const ASTNode_t *node);
/**
* Since graphviz will interpret identical names as referring to
* the same node presentation-wise it is better if each function node
* has a unique name.
*
* Returns the name of the function with the name of the first child
* prepended
*
* THIS COULD BE DONE BETTER
*/
char *
FormulaGraphvizFormatter_FunctionGetUniqueName (const ASTNode_t *node);
/**
* Formats the given ASTNode as a directed graph operator and returns the result
* as a string.
*/
char *
FormulaGraphvizFormatter_formatOperator (const ASTNode_t *node);
/**
* Since graphviz will interpret identical names as referring to
* the same node presentation-wise it is better if each function node
* has a unique name.
*
* Returns the name of the operator with the name of the first child
* prepended
*
* THIS COULD BE DONE BETTER
*/
char *
FormulaGraphvizFormatter_OperatorGetUniqueName (const ASTNode_t *node);
/**
* Formats the given ASTNode as a rational number and returns the result as
* a string. This amounts to:
*
* "(numerator/denominator)"
*/
char *
FormulaGraphvizFormatter_formatRational (const ASTNode_t *node);
/**
* Formats the given ASTNode as a real number and returns the result as
* a string.
*/
char *
FormulaGraphvizFormatter_formatReal (const ASTNode_t *node);
/**
* Visits the given ASTNode node. This function is really just a
* dispatcher to either FormulaGraphvizFormatter_visitFunction() or
* FormulaGraphvizFormatter_visitOther().
*/
void
FormulaGraphvizFormatter_visit ( const ASTNode_t *parent,
const ASTNode_t *node,
StringBuffer_t *sb );
/**
* Visits the given ASTNode as a function. For this node only the
* traversal is preorder.
* Writes the function as a directed graph and appends the result
* to the StringBuffer.
*/
void
FormulaGraphvizFormatter_visitFunction ( const ASTNode_t *parent,
const ASTNode_t *node,
StringBuffer_t *sb );
/**
* Visits the given ASTNode as the function "log(10, x)" and in doing so,
* formats it as "log10(x)" (where x is any subexpression).
* Writes the function as a directed graph and appends the result
* to the StringBuffer.
*
* A seperate function may not be strictly speaking necessary for graphs
*/
void
FormulaGraphvizFormatter_visitLog10 ( const ASTNode_t *parent,
const ASTNode_t *node,
StringBuffer_t *sb );
/**
* Visits the given ASTNode as the function "root(2, x)" and in doing so,
* formats it as "sqrt(x)" (where x is any subexpression).
* Writes the function as a directed graph and appends the result
* to the StringBuffer.
*
* A seperate function may not be strictly speaking necessary for graphs
*/
void
FormulaGraphvizFormatter_visitSqrt ( const ASTNode_t *parent,
const ASTNode_t *node,
StringBuffer_t *sb );
/**
* Visits the given ASTNode as a unary minus. For this node only the
* traversal is preorder.
* Writes the function as a directed graph and appends the result
* to the StringBuffer.
*
* A seperate function may not be strictly speaking necessary for graphs
*/
void
FormulaGraphvizFormatter_visitUMinus ( const ASTNode_t *parent,
const ASTNode_t *node,
StringBuffer_t *sb );
/**
* Visits the given ASTNode and continues the inorder traversal.
* Writes the function as a directed graph and appends the result
* to the StringBuffer.
*/
void
FormulaGraphvizFormatter_visitOther ( const ASTNode_t *parent,
const ASTNode_t *node,
StringBuffer_t *sb );
END_C_DECLS
#endif /* !SWIG */
#endif /* FormulaGraphvizFormatter_h */
|