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/**
* @file evaluateCustomMath.cs
* @brief evaluates the given formula
* @author Frank Bergmann
*
* <!--------------------------------------------------------------------------
* This sample program is distributed under a different license than the rest
* of libSBML. This program uses the open-source MIT license, as follows:
*
* Copyright (c) 2013-2018 by the California Institute of Technology
* (California, USA), the European Bioinformatics Institute (EMBL-EBI, UK)
* and the University of Heidelberg (Germany), with support from the National
* Institutes of Health (USA) under grant R01GM070923. All rights reserved.
*
* Permission is hereby granted, free of charge, to any person obtaining a
* copy of this software and associated documentation files (the "Software"),
* to deal in the Software without restriction, including without limitation
* the rights to use, copy, modify, merge, publish, distribute, sublicense,
* and/or sell copies of the Software, and to permit persons to whom the
* Software is furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
* THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
* DEALINGS IN THE SOFTWARE.
*
* Neither the name of the California Institute of Technology (Caltech), nor
* of the European Bioinformatics Institute (EMBL-EBI), nor of the University
* of Heidelberg, nor the names of any contributors, may be used to endorse
* or promote products derived from this software without specific prior
* written permission.
* ------------------------------------------------------------------------ -->
*/
using System;
using System.Collections.Generic;
using System.IO;
using System.Text;
using libsbmlcs;
internal class EvaluateCustomMath
{
public static int Main(string[] args)
{
if (args.Length < 1)
{
Console.WriteLine("Usage: evaluateCustomMath formula [model containing values]");
return 1;
}
string formula = args[0];
string filename = args.Length == 2 ? args[1] : null;
var math = libsbml.parseFormula(formula);
if (math == null)
{
Console.WriteLine("Invalid formula, aborting.");
return 1;
}
SBMLDocument doc = null;
if (filename != null)
{
doc = libsbml.readSBML(filename);
if (doc.getNumErrors(libsbml.LIBSBML_SEV_ERROR) > 0)
{
Console.WriteLine("The models contains errors, please correct them before continuing.");
doc.printErrors();
return 1;
}
// the following maps a list of ids to their corresponding model values
// this makes it possible to evaluate expressions involving SIds.
SBMLTransforms.mapComponentValues(doc.getModel());
}
else
{
// create dummy document
doc = new SBMLDocument(3, 1);
}
var result = SBMLTransforms.evaluateASTNode(math, doc.getModel());
Console.WriteLine("{0} = {1}", formula, result);
return 0;
}
}
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