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/**
* @file multi_example1.cs
* @brief multi create example
* @author Sarah Keating
* @author Frank Bergmann
*
* <!--------------------------------------------------------------------------
* This file is part of libSBML. Please visit http://sbml.org for more
* information about SBML, and the latest version of libSBML.
*
* Copyright (C) 2009-2013 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
*
* Copyright (C) 2006-2008 by the California Institute of Technology,
* Pasadena, CA, USA
*
* Copyright (C) 2002-2005 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. Japan Science and Technology Agency, Japan
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online as http://sbml.org/software/libsbml/license.html
* ------------------------------------------------------------------------ -->
*/
using System;
using libsbmlcs;
public class multi_example1
{
static void Main(string[] args)
{
SBMLNamespaces sbmlns = new SBMLNamespaces(3, 1, "multi", 1);
// create the document
SBMLDocument document = new SBMLDocument(sbmlns);
// set the required attribute to true
SBMLDocumentPlugin docPlug =
(SBMLDocumentPlugin)(document.getPlugin("multi"));
docPlug.setRequired(true);
// create the Model
Model model = document.createModel();
// create the compartments
Compartment c = model.createCompartment();
c.setId("membrane");
c.setConstant(true);
// set the multi attribute isType via the compartmentPlugin
MultiCompartmentPlugin compPlug =
(MultiCompartmentPlugin)(c.getPlugin("multi"));
compPlug.setIsType(true);
c = model.createCompartment();
c.setId("inter_membrane");
c.setConstant(true);
// set the multi attribute isType via the compartmentPlugin
compPlug =
(MultiCompartmentPlugin)(c.getPlugin("multi"));
compPlug.setIsType(true);
// create the compartmentReferences
CompartmentReference compRef = compPlug.createCompartmentReference();
compRef.setId("m1");
compRef.setCompartment("membrane");
compRef = compPlug.createCompartmentReference();
compRef.setId("m2");
compRef.setCompartment("membrane");
// create the speciesTypes
MultiModelPlugin modelPlug =
(MultiModelPlugin)(model.getPlugin("multi"));
MultiSpeciesType st = modelPlug.createMultiSpeciesType();
st.setId("stX");
st.setCompartment("ct");
st = modelPlug.createMultiSpeciesType();
st.setId("stXXcis");
st.setCompartment("ct");
// create speciesTypeInstances
SpeciesTypeInstance sti = st.createSpeciesTypeInstance();
sti.setId("stiX1");
sti.setSpeciesType("stX");
sti = st.createSpeciesTypeInstance();
sti.setId("stiX2");
sti.setSpeciesType("stX");
// create speciesTypeBond
InSpeciesTypeBond istb = st.createInSpeciesTypeBond();
istb.setBindingSite1("stiX1");
istb.setBindingSite2("stiX2");
// another speciesType
st = modelPlug.createMultiSpeciesType();
st.setId("stXXtrans");
st.setCompartment("cct");
// create speciesTypeInstances
sti = st.createSpeciesTypeInstance();
sti.setId("stiX1");
sti.setSpeciesType("stX");
sti.setCompartmentReference("cr1");
sti = st.createSpeciesTypeInstance();
sti.setId("stiX2");
sti.setSpeciesType("stX");
sti.setCompartmentReference("cr2");
// create speciesTypeBond
istb = st.createInSpeciesTypeBond();
istb.setBindingSite1("stiX1");
istb.setBindingSite2("stiX2");
libsbml.writeSBML(document, "multi_example1.xml");
}
}
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