File: dyn_example1.xml

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<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:dyn="http://www.sbml.org/sbml/level3/version1/dyn/version1" level="3" version="1" dyn:required="true">
  <model id="singleCell">
    <listOfCompartments>
      <compartment id="Extracellular" spatialDimensions="3" size="8000000" constant="true"/>
      <compartment id="PlasmaMembrane" spatialDimensions="2" size="314" constant="true"/>
      <compartment id="Cytosol" spatialDimensions="3" size="523" constant="true"/>
    </listOfCompartments>
    <listOfSpecies>
      <species id="C_EC" compartment="Extracellular" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
      <species id="RTR_M" compartment="PlasmaMembrane" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
      <species id="RCC_M" compartment="PlasmaMembrane" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
      <species id="A_C" compartment="Cytosol" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
      <species id="AA_C" compartment="Cytosol" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
      <species id="T" compartment="Cytosol" initialConcentration="10" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
      <species id="S" compartment="Cytosol" initialConcentration="5" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
    </listOfSpecies>
    <listOfReactions>
      <reaction id="r1" reversible="true" fast="false" compartment="Extracellular">
        <listOfReactants>
          <speciesReference species="RTR_M" stoichiometry="1" constant="true"/>
          <speciesReference species="C_EC" stoichiometry="1" constant="true"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="RCC_M" stoichiometry="1" constant="true"/>
        </listOfProducts>
      </reaction>
      <reaction id="r2" reversible="true" fast="false" compartment="Cytosol">
        <listOfReactants>
          <speciesReference species="A_C" stoichiometry="1" constant="true"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="AA_C" stoichiometry="1" constant="true"/>
        </listOfProducts>
        <listOfModifiers>
          <modifierSpeciesReference species="RCC_M"/>
        </listOfModifiers>
      </reaction>
    </listOfReactions>
    <listOfEvents>
      <event useValuesFromTriggerTime="true" dyn:cboTerm="http://cbo.biocomplexity.indiana.edu/svn/cbo/trunk/CBO_1_0.owl#CellDeath" dyn:applyToAll="true">
        <trigger initialValue="false" persistent="true">
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <lt/>
              <ci> AA_C </ci>
              <ci> T </ci>
            </apply>
          </math>
        </trigger>
      </event>
      <event useValuesFromTriggerTime="true" dyn:cboTerm="http://cbo.biocomplexity.indiana.edu/svn/cbo/trunk/CBO_1_0.owl#CellDevision" dyn:applyToAll="true">
        <trigger initialValue="false" persistent="true">
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <lt/>
              <ci> AA_C </ci>
              <ci> S </ci>
            </apply>
          </math>
        </trigger>
      </event>
    </listOfEvents>
  </model>
</sbml>