File: simple-L2-layout.xml

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<?xml version="1.0" encoding="utf-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level2" level="2" version="1" >
	<model>
		<notes>
			<p xmlns="http://www.w3.org/1999/xhtml">
				Simple Model one compartment, with two species, and a reaction.		
				It also contains one Layout for the model, but no render 
				information and so tools are free to display it as needed.
			</p>
		</notes>
		<annotation>
			<listOfLayouts xmlns="http://projects.eml.org/bcb/sbml/level2">
				<layout id="JDesigner2_0" xmlns="http://projects.eml.org/bcb/sbml/level2">
					<!--Created by SBW SBML LayoutViewer/Manipulator-->
					<dimensions width="436" height="232" />
					<listOfCompartmentGlyphs>
						<compartmentGlyph id="cGlyph_0" compartment="vol1">
							<boundingBox>
								<position x="48" y="21" />
								<dimensions width="340" height="190" />
							</boundingBox>
						</compartmentGlyph>
					</listOfCompartmentGlyphs>
					<listOfSpeciesGlyphs>
						<speciesGlyph id="sGlyph_0" species="Node0">
							<boundingBox>
								<position x="79" y="91" />
								<dimensions width="62" height="40" />
							</boundingBox>
						</speciesGlyph>
						<speciesGlyph id="sGlyph_1" species="Node1">
							<boundingBox>
								<position x="297" y="91" />
								<dimensions width="62" height="40" />
							</boundingBox>
						</speciesGlyph>
					</listOfSpeciesGlyphs>
					<listOfReactionGlyphs>
						<reactionGlyph id="rGlyph_0" reaction="J0">
							<boundingBox>
								<position x="0" y="0" />
								<dimensions width="0" height="0" />
							</boundingBox>
							<curve>
								<listOfCurveSegments />
							</curve>
							<listOfSpeciesReferenceGlyphs>
								<speciesReferenceGlyph id="SpeciesReference_J0_0" speciesReference="Node1" speciesGlyph="sGlyph_1" role="product" objectRole="product">
									<curve>
										<listOfCurveSegments>
											<curveSegment xsi:type="CubicBezier" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
												<start x="149" y="111" />
												<end x="289" y="111" />
												<basePoint1 x="219" y="111" />
												<basePoint2 x="219" y="111" />
											</curveSegment>
										</listOfCurveSegments>
									</curve>
								</speciesReferenceGlyph>
								<speciesReferenceGlyph id="SpeciesReference_J0_2" speciesReference="Node0" speciesGlyph="sGlyph_0" role="substrate" objectRole="substrate">
									<curve>
										<listOfCurveSegments />
									</curve>
								</speciesReferenceGlyph>
							</listOfSpeciesReferenceGlyphs>
						</reactionGlyph>
					</listOfReactionGlyphs>
					<listOfTextGlyphs>
						<textGlyph id="tGlyph_0" graphicalObject="sGlyph_0" text="Node0">
							<boundingBox>
								<position x="79" y="91" />
								<dimensions width="62" height="40" />
							</boundingBox>
						</textGlyph>
						<textGlyph id="tGlyph_1" graphicalObject="sGlyph_1" text="Node1">
							<boundingBox>
								<position x="297" y="91" />
								<dimensions width="62" height="40" />
							</boundingBox>
						</textGlyph>
					</listOfTextGlyphs>
				</layout>
			</listOfLayouts>
		</annotation>
		<listOfCompartments>
			<compartment id="compartment" size="1" />
			<compartment id="vol1" size="1" />
		</listOfCompartments>
		<listOfSpecies>
			<species id="Node0" boundaryCondition="false" initialConcentration="0" compartment="vol1" />
			<species id="Node1" boundaryCondition="false" initialConcentration="0" compartment="vol1" />
		</listOfSpecies>
		<listOfParameters>
			<parameter id="J0_k" value="0.1" />
		</listOfParameters>
		<listOfReactions>
			<reaction id="J0" reversible="false">
				<listOfReactants>
					<speciesReference species="Node0" stoichiometry="1" />
				</listOfReactants>
				<listOfProducts>
					<speciesReference species="Node1" stoichiometry="1" />
				</listOfProducts>
				<kineticLaw>
					<math xmlns="http://www.w3.org/1998/Math/MathML">
						<apply>
							<times />
							<ci>
                           J0_k
                     </ci>
							<ci>
                           Node0
                     </ci>
						</apply>
					</math>
				</kineticLaw>
			</reaction>
		</listOfReactions>
	</model>
</sbml>