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#!/usr/bin/python3
##
## \file addModelHistory.py
## \brief adds Model History to a model
## \author Sarah Keating
##
## <!--------------------------------------------------------------------------
## This sample program is distributed under a different license than the rest
## of libSBML. This program uses the open-source MIT license, as follows:
##
## Copyright (c) 2013-2018 by the California Institute of Technology
## (California, USA), the European Bioinformatics Institute (EMBL-EBI, UK)
## and the University of Heidelberg (Germany), with support from the National
## Institutes of Health (USA) under grant R01GM070923. All rights reserved.
##
## Permission is hereby granted, free of charge, to any person obtaining a
## copy of this software and associated documentation files (the "Software"),
## to deal in the Software without restriction, including without limitation
## the rights to use, copy, modify, merge, publish, distribute, sublicense,
## and/or sell copies of the Software, and to permit persons to whom the
## Software is furnished to do so, subject to the following conditions:
##
## The above copyright notice and this permission notice shall be included in
## all copies or substantial portions of the Software.
##
## THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
## IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
## FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
## THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
## LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
## FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
## DEALINGS IN THE SOFTWARE.
##
## Neither the name of the California Institute of Technology (Caltech), nor
## of the European Bioinformatics Institute (EMBL-EBI), nor of the University
## of Heidelberg, nor the names of any contributors, may be used to endorse
## or promote products derived from this software without specific prior
## written permission.
## ------------------------------------------------------------------------ -->
import sys
import os.path
from libsbml import *
def printStatus(message, status):
statusString = ""
if status == LIBSBML_OPERATION_SUCCESS:
statusString = "succeeded"
elif status == LIBSBML_INVALID_OBJECT:
statusString = "invalid object"
elif status == LIBSBML_OPERATION_FAILED:
statusString = "operation failed"
else:
statusString = "unknown"
print (message + statusString )
def main (args):
"""usage: addModelHistory <input-filename> <output-filename>
Adds a model history to the model
"""
if len(args) != 3:
print(main.__doc__)
sys.exit(2)
d = readSBML(args[1])
errors = d.getNumErrors()
if errors > 0:
print("Read Error(s):" )
d.printErrors()
print("Correct the above and re-run." )
else:
h = ModelHistory()
c = ModelCreator()
c.setFamilyName("Keating")
c.setGivenName("Sarah")
c.setEmail("sbml-team@caltech.edu")
c.setOrganization("University of Hertfordshire")
status = h.addCreator(c)
printStatus("Status for addCreator: ", status)
date = Date("1999-11-13T06:54:32")
date2 = Date("2007-11-30T06:54:00-02:00")
status = h.setCreatedDate(date)
printStatus("Set created date: ", status)
status = h.setModifiedDate(date2)
printStatus("Set modified date: ", status)
status = d.getModel().setModelHistory(h)
printStatus("Set model history: ", status)
writeSBML(d, args[2])
return errors
if __name__ == '__main__':
main(sys.argv)
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