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#!/usr/bin/env python
import sys
def convertOboFile(oboFile, outputFile):
term = -1
parent = -1
stream = open(oboFile)
output = open(outputFile, "w")
for line in stream.readlines():
try:
if line.startswith("id:"):
term = int( line[8:15] )
elif line.startswith("is_a:"):
parent = int( line[10:17] )
output.write( " mParent.insert( pair<const int, int>(%3d, %3d) );\n" % (term, parent))
elif line.startswith("is_obsolete:"):
parent = 1000
output.write( " mParent.insert( pair<const int, int>(%3d, %4d) );\n" % (term, parent))
except ValueError:
pass
stream.close()
output.close()
if __name__ == '__main__':
if len(sys.argv) != 3:
convertOboFile('sbo-obo-flat.txt', 'output.txt')
else:
convertOboFile(sys.argv[1], sys.argv[2])
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