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## @file setup.py
## @brief Python distutils code for libSBML Python module
## @author Michael Hucka
## @author Ben Bornstein
## @author Ben Kovitz
## @author Frank Bergmann (fbergman@caltech.edu)
##
##<!---------------------------------------------------------------------------
## This file is part of libSBML. Please visit http://sbml.org for more
## information about SBML, and the latest version of libSBML.
##
## Copyright (C) 2013-2018 jointly by the following organizations:
## 1. California Institute of Technology, Pasadena, CA, USA
## 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
## 3. University of Heidelberg, Heidelberg, Germany
##
## Copyright 2005-2010 California Institute of Technology.
## Copyright 2002-2005 California Institute of Technology and
## Japan Science and Technology Corporation.
##
## This library is free software; you can redistribute it and/or modify it
## under the terms of the GNU Lesser General Public License as published by
## the Free Software Foundation. A copy of the license agreement is provided
## in the file named "LICENSE.txt" included with this software distribution
## and also available online as http://sbml.org/software/libsbml/license.html
##----------------------------------------------------------------------- -->*/
import glob
import os
import sys
import shutil
import platform
from distutils.sysconfig import get_config_vars
# remove -Wstrict-prototypes
(opt,) = get_config_vars('OPT')
if opt != None:
os.environ['OPT'] = " ".join(
flag for flag in opt.split() if flag != '-Wstrict-prototypes'
)
# we need to switch the __init__.py file based on the python version
# as python 3 uses a different syntax for metaclasses
if sys.version_info >= (3,0):
# this is python 3.x
if (os.path.exists('./libsbml/__init__.py')):
os.remove('./libsbml/__init__.py')
shutil.copyfile('./script/libsbml3.py', './libsbml/__init__.py')
else:
# this is an older python
if (os.path.exists('./libsbml/__init__.py')):
os.remove('./libsbml/__init__.py')
shutil.copyfile('./script/libsbml2.py', './libsbml/__init__.py')
# figure out the os
basepath = './base/'
current_os = 'LINUX'
lib_dirs = ['/usr/lib']
inc_dirs = ['/usr/include/libxml2']
libs = ['xml2', 'bz2', 'z']
package_name = '"libsbml"'
definitions = []
packages = [
('USE_COMP', None),
('USE_GROUPS', None),
('USE_QUAL', None),
('USE_MULTI', None),
('USE_FBC', None),
('USE_RENDER', None),
('USE_LAYOUT', None)
]
if platform.system() == 'Darwin':
current_os = 'DARWIN'
elif platform.system() == 'Windows':
current_os = 'WIN32'
package_name = '\\"libsbml\\"'
definitions = [
('LIBSBML_EXPORTS', None),
('LIBLAX_STATIC', None)
]
dependency_dir = 'D:\Development\libsbml_dependencies\install_vs9_release_x86'
inc_dirs= [ dependency_dir + '/include']
lib_dirs= [ dependency_dir + '/lib']
libs = ['libxml2', 'libbz2', 'zdll', 'libiconv', 'ws2_32']
cfiles = [ basepath + 'libsbml_wrap.cpp' ]
for root, dirs, files in os.walk(basepath + 'sbml'):
for file in files:
if file.endswith('.c') or file.endswith('.cpp'):
cfiles.append(os.path.join(root, file))
try:
from setuptools import setup, Extension, Command
except ImportError:
from distutils.core import setup, Extension
setup(name = "${NAME}",
version = "${PACKAGE_VERSION}",
description = "LibSBML Python API",
long_description = ("LibSBML is a library for reading, writing and "+
"manipulating the Systems Biology Markup Language "+
"(SBML). It is written in ISO C and C++, supports "+
"SBML Levels 1, 2 and 3, and runs on Linux, Microsoft "+
"Windows, and Apple MacOS X. For more information "+
"about SBML, please see http://sbml.org."),
license = "LGPL",
author = "SBML Team",
author_email = "libsbml-team@googlegroups.com",
url = "http://sbml.org",
packages = ["libsbml"],
package_dir = {'libsbml': 'libsbml'},
#data_files = [('lib/site-packages', ['libsbml.pth'])],
ext_package = "libsbml",
ext_modules = [Extension("_libsbml",
sources = cfiles,
define_macros = definitions
+ [(current_os, None),
('USE_LIBXML', None),
('USE_ZLIB', None),
('USE_BZ2', None)
]
+ packages,
include_dirs = inc_dirs +
[
basepath + "/",
basepath + "/sbml",
basepath + "/sbml/compress",
basepath + "/sbml/validator/constraints",
basepath + "/sbml/packages/comp/validator",
basepath + "/sbml/packages/comp/validator/constraints",
"."],
libraries = libs,
library_dirs = lib_dirs
)
]
)
|
