1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
|
###############################################################################
#
#
#
# Description : CMake build script for compiling and linking the
# python bindings
# Original author(s): Frank Bergmann <fbergman@caltech.edu>
# Organization : California Institute of Technology
#
# This file is supposed to be called by buildPython32.bat / buildPython64.bat
#
###############################################################################
cmake_minimum_required(VERSION 2.8...3.19)
project(_libsbml)
include (CMakeTestCCompiler)
include (CheckCSourceCompiles)
include (CheckCXXSourceCompiles)
include (CheckStructHasMember)
include (CheckLibraryExists)
include (CheckFunctionExists)
include (CheckCCompilerFlag)
include (CheckCSourceRuns)
include (CheckSymbolExists)
include (CheckTypeSize)
find_package(PythonInterp REQUIRED)
# determine the library path and include path
# for the given interpreter
get_filename_component(path "${PYTHON_EXECUTABLE}" PATH)
file(GLOB python_lib "${path}/libs/python*.lib")
set(PYTHON_LIBRARY ${python_lib})
set(PYTHON_INCLUDE_DIR ${path}/include)
find_package(PythonLibs REQUIRED)
include_directories(${CMAKE_CURRENT_SOURCE_DIR})
include_directories(${CMAKE_CURRENT_SOURCE_DIR}/../swig)
if (CMAKE_SIZEOF_VOID_P EQUAL 4)
include_directories(${CMAKE_SOURCE_DIR}/../../../win32/include)
else()
include_directories(${CMAKE_SOURCE_DIR}/../../../win64/include)
endif()
include_directories(${PYTHON_INCLUDE_DIRS})
include_directories(${DEP_DIR}/include)
add_definitions(-DUSE_COMP
-DUSE_FBC
-DUSE_QUAL
-DUSE_LAYOUT
-DUSE_MULTI
-DUSE_GROUPS
-DUSE_RENDER
-DUSE_L3V2EXTENDEDMATH
)
# set build type default
set(CMAKE_BUILD_TYPE "Release" CACHE STRING "Choose the type of build, options are: None (CMAKE_CXX_FLAGS or CMAKE_C_FLAGS are used), Debug, Release, RelWithDebInfo, MinSizeRel" FORCE )
###############################################################################
#
# Set up remaining variables, add option for universal binaries
#
set(BUILD_DEFINITIONS)
if(UNIX)
if(APPLE)
add_definitions(-DMACOSX)
set(BUILD_DEFINITIONS "${BUILD_DEFINITIONS} -DMACOSX")
# On OSX it is common to build universal binaries to support multiple
# processor architectures. The default behavior is not to build
# multiple architectures, as most users might not need that.
option(ENABLE_UNIVERSAL "Create Universal Binaries" OFF)
set(CMAKE_OSX_ARCHITECTURES "${CMAKE_OSX_ARCHITECTURES}" CACHE STRING "A semicolon separated list of build architectures to be used")
if(ENABLE_UNIVERSAL)
# if universal binaries are requested and none defined so far
# overwrite them with all three common architectures. If the user
# specified their own list of architectures do not touch!
if (CMAKE_OSX_ARCHITECTURES STREQUAL "")
set(CMAKE_OSX_ARCHITECTURES "i386;ppc;x86_64" CACHE STRING "A semicolon separated list of build architectures to be used" FORCE)
endif()
endif(ENABLE_UNIVERSAL)
else(APPLE)
add_definitions(-DLINUX)
if (NOT CYGWIN)
# on cygwin all code is position independent so -fPIC is not needed
set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fno-strict-aliasing -fPIC")
set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -fno-strict-aliasing -fPIC")
endif()
set(BUILD_DEFINITIONS "${BUILD_DEFINITIONS} -DLINUX")
endif(APPLE)
add_definitions( -DPACKAGE_VERSION=\"${PACKAGE_VERSION}\" -DPACKAGE_NAME=\"${PROJECT_NAME}\")
set(BUILD_DEFINITIONS "${BUILD_DEFINITIONS} -DPACKAGE_VERSION=\"${PACKAGE_VERSION}\" -DPACKAGE_NAME=\"${PROJECT_NAME}\"")
else(UNIX)
add_definitions(-DWIN32 -DLIBSBML_EXPORTS -DLIBLAX_EXPORTS)
set(BUILD_DEFINITIONS "${BUILD_DEFINITIONS} -DWIN32 -DLIBSBML_EXPORTS -DLIBLAX_EXPORTS")
if(MSVC)
add_definitions(-D_CRT_SECURE_NO_WARNINGS -D_CRT_NONSTDC_NO_DEPRECATE)
set(BUILD_DEFINITIONS "${BUILD_DEFINITIONS} -D_CRT_SECURE_NO_WARNINGS")
option(WITH_STATIC_RUNTIME "Compile using the static MSVC Runtime" OFF)
if (NOT WITHOUT_STATIC_RUNTIME)
foreach(flag_var
CMAKE_CXX_FLAGS CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_RELEASE
CMAKE_CXX_FLAGS_MINSIZEREL CMAKE_CXX_FLAGS_RELWITHDEBINFO
CMAKE_C_FLAGS CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE
CMAKE_C_FLAGS_MINSIZEREL CMAKE_C_FLAGS_RELWITHDEBINFO)
if(${flag_var} MATCHES "/MD")
string(REGEX REPLACE "/MD" "/MT" ${flag_var} "${${flag_var}}")
endif(${flag_var} MATCHES "/MD")
endforeach(flag_var)
add_definitions( -D_MT)
endif(NOT WITHOUT_STATIC_RUNTIME)
file(GLOB WIN32_BINARIES ${CMAKE_SOURCE_DIR}/dependencies/bin/*.dll)
INSTALL(FILES ${WIN32_BINARIES} DESTINATION bin)
elseif(CYGWIN)
add_definitions(-DCYGWIN)
set(BUILD_DEFINITIONS "${BUILD_DEFINITIONS} -DCYGWIN")
elseif(MINGW)
if(WITH_LIBXML)
# this is necessary to build with libxml2 on mingw
add_definitions(-DLIBXML_STATIC)
endif(WITH_LIBXML)
endif(MSVC)
endif(UNIX)
set(LIB_PATH)
if (CMAKE_SIZEOF_VOID_P EQUAL 4)
set(LIB_PATH "${CMAKE_SOURCE_DIR}/../../../win32/lib")
else()
set(LIB_PATH "${CMAKE_SOURCE_DIR}/../../../win64/lib")
endif()
find_library(SBML_LIBRARY
NAMES libsbml-static.lib
PATHS ${LIB_PATH} ${DEP_DIR}/lib
)
find_library(XML_LIBRARY
NAMES libxml2.lib
PATHS ${LIB_PATH} ${DEP_DIR}/lib
)
find_library(ICONV_LIBRARY
NAMES libiconv.lib iconv.lib
PATHS ${LIB_PATH} ${DEP_DIR}/lib
)
find_library(BZ2_LIBRARY
NAMES libbz2.lib bzip2.lib
PATHS ${LIB_PATH} ${DEP_DIR}/lib
)
find_library(ZLIB_LIBRARY
NAMES zdll.lib zlib.lib
PATHS ${LIB_PATH} ${DEP_DIR}/lib
)
if (MSVC)
add_definitions(/bigobj)
endif()
set(LIBS
${LIBS} ${SBML_LIBRARY}
${XML_LIBRARY} ${ICONV_LIBRARY}
${BZ2_LIBRARY} ${ZLIB_LIBRARY}
${PYTHON_LIBRARIES}
)
# remove additional list for python3
foreach(lib ${LIBS})
get_filename_component(name "${lib}" NAME)
string(TOLOWER "${name}" lower)
if ("${lower}" STREQUAL "python3.lib" OR "${lower}" MATCHES "_d.lib$" )
list(REMOVE_ITEM LIBS "${lib}")
endif()
endforeach()
add_library(binding_python_lib SHARED libsbml_wrap.cpp)
set_target_properties (binding_python_lib PROPERTIES OUTPUT_NAME "_libsbml")
if (UNIX)
set_target_properties (binding_python_lib PROPERTIES PREFIX "")
set_target_properties (binding_python_lib PROPERTIES SUFFIX ".so")
else()
if (CYGWIN)
set_target_properties (binding_python_lib PROPERTIES PREFIX "")
set_target_properties (binding_python_lib PROPERTIES SUFFIX ".dll")
else()
set(LIBS ${LIBS} ws2_32.lib)
set_target_properties (binding_python_lib PROPERTIES SUFFIX ".pyd")
endif()
endif()
target_link_libraries(binding_python_lib ${LIBS} ws2_32.lib)
|
