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#!/usr/bin/env perl
# -*-Perl-*-
##
## \file convertSBML.pl
## \brief Converts SBML L1 documents (any version) to L2v3
## \author TBI {xtof,raim}@tbi.univie.ac.at
##
##
## Copyright 2005 TBI
##
## This library is free software; you can redistribute it and/or modify it
## under the terms of the GNU Lesser General Public License as published
## by the Free Software Foundation; either version 2.1 of the License, or
## any later version.
##
## This library is distributed in the hope that it will be useful, but
## WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
## MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
## documentation provided hereunder is on an "as is" basis, and the
## California Institute of Technology and Japan Science and Technology
## Corporation have no obligations to provide maintenance, support,
## updates, enhancements or modifications. In no event shall the
## California Institute of Technology or the Japan Science and Technology
## Corporation be liable to any party for direct, indirect, special,
## incidental or consequential damages, including lost profits, arising
## out of the use of this software and its documentation, even if the
## California Institute of Technology and/or Japan Science and Technology
## Corporation have been advised of the possibility of such damage. See
## the GNU Lesser General Public License for more details.
##
## You should have received a copy of the GNU Lesser General Public License
## along with this library; if not, write to the Free Software Foundation,
## Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
##
## The original code contained here was initially developed by:
##
## Christoph Flamm and Rainer Machne
## Institut fuer Theoretische Chemie
## Universitaet Wien
## Waehringerstrasse 17/3/308
## A-1090 Wien, Austria
use File::Basename;
use blib '../../src/bindings/perl';
use LibSBML;
use strict;
use vars qw/@ARGV/;
unless (@ARGV == 2) {
printf STDERR
"\n usage: @{[basename($0)]} <input-filename> <output-filename>\n\n";
exit (1);
};
my ($inFileName, $outFileName) = (shift(),shift());
my $rd = new LibSBML::SBMLReader();
my $d = $rd->readSBML($inFileName);
my $errors = $d->getNumErrors();
if ($errors > 0) {
printf( "Read Error(s):\n" );
$d->printErrors();
printf("Conversion skipped. Correct the above and re-run.\n");
}
else {
if ( $d->getLevel() == 2 ) {
$d->setLevelAndVersion(1, 2)
}
else {
$d->setLevelAndVersion(2, 4)
}
$errors = $d->getNumErrors();
if ($errors > 0) {
printf( "Conversion Error(s):\n" );
$d->printErrors();
printf("Conversion skipped. Either libSBML does not (yet) have ");
printf("ability to convert this model or (automatic) conversion ");
printf("is not possible.");
}
else {
$d->writeSBML($outFileName);
}
}
__END__
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