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|
include ../Make.helper
CXX_FLAGS = $(MY_CXX_FLAGS) $(MY_CXX_OPT_FLAGS) -I$(INC_DIR) -L$(LIB_DIR)
LIBS = -lsdsl -ldivsufsort -ldivsufsort64
SRC_DIR = src
TMP_DIR = ../tmp
PAT_DIR = pattern
BIN_DIR = bin
TC_PATHS:=$(call config_column,test_case.config,2)
TC_PATHS_INT:=$(call config_column,test_case_int.config,2)
TC_DICT_PATHS:=$(call config_column,dic.config,2)
TC_IDS:=$(call config_ids,test_case.config)
TC_IDS_INT:=$(call config_ids,test_case_int.config)
IDX_IDS:=$(call config_ids,index.config)
IDX_IDS_INT:=$(call config_ids,index_int.config)
PAT_LENS:=$(call config_column,pattern_length.config,1)
PAT_LENS_INT:=$(call config_column,pattern_length_int.config,1)
RESULT_FILE=results/all.txt
RESULT_FILE_INT=results/all_int.txt
QUERY_EXECS = $(foreach IDX_ID,$(IDX_IDS),$(BIN_DIR)/query_idx_$(IDX_ID))
QUERY_EXECS_INT = $(foreach IDX_ID,$(IDX_IDS_INT),$(BIN_DIR)/query_int_idx_$(IDX_ID))
BUILD_EXECS = $(foreach IDX_ID,$(IDX_IDS),$(BIN_DIR)/build_idx_$(IDX_ID))
BUILD_EXECS_INT = $(foreach IDX_ID,$(IDX_IDS_INT),$(BIN_DIR)/build_int_idx_$(IDX_ID))
SIZES_EXECS = $(foreach IDX_ID,$(IDX_IDS),$(BIN_DIR)/size_of_idx_$(IDX_ID))
SIZES_EXECS_INT = $(foreach IDX_ID,$(IDX_IDS_INT),$(BIN_DIR)/size_of_int_idx_$(IDX_ID))
PATTERNS = $(foreach TC_ID,$(TC_IDS),\
$(foreach PAT_LEN,$(PAT_LENS),$(PAT_DIR)/$(TC_ID).$(PAT_LEN).pattern))
PATTERNS_INT = $(foreach TC_ID,$(TC_IDS_INT),\
$(foreach PAT_LEN,$(PAT_LENS_INT),$(PAT_DIR)/$(TC_ID).$(PAT_LEN).pattern.int))
INDEXES = $(foreach IDX_ID,$(IDX_IDS),\
$(foreach TC_ID,$(TC_IDS),indexes/$(TC_ID).$(IDX_ID).byte))
INDEXES_INT = $(foreach IDX_ID,$(IDX_IDS_INT),\
$(foreach TC_ID,$(TC_IDS_INT),indexes/$(TC_ID).$(IDX_ID).int))
SIZES = $(foreach IDX_ID,$(IDX_IDS),\
$(foreach TC_ID,$(TC_IDS),info/$(TC_ID).$(IDX_ID).size))
SIZES_INT = $(foreach IDX_ID,$(IDX_IDS_INT),\
$(foreach TC_ID,$(TC_IDS_INT),info/$(TC_ID).$(IDX_ID).size.int))
HTML = $(foreach IDX_ID,$(IDX_IDS),\
$(foreach TC_ID,$(TC_IDS),info/$(TC_ID).$(IDX_ID).byte.html))
HTML_INT = $(foreach IDX_ID,$(IDX_IDS_INT),\
$(foreach TC_ID,$(TC_IDS_INT),info/$(TC_ID).$(IDX_ID).int.html))
TIME_FILES = $(foreach IDX_ID,$(IDX_IDS),\
$(foreach TC_ID,$(TC_IDS),\
$(foreach PAT_LEN,$(PAT_LENS),results/$(TC_ID).$(IDX_ID).$(PAT_LEN).byte)))
TIME_FILES_INT = $(foreach IDX_ID,$(IDX_IDS_INT),\
$(foreach TC_ID,$(TC_IDS_INT),\
$(foreach PAT_LEN,$(PAT_LENS_INT),results/$(TC_ID).$(IDX_ID).$(PAT_LEN).int)))
COMP_FILES = $(addsuffix .z.info,$(TC_PATHS) $(TC_PATHS_INT))
HELPER_BINS = $(BIN_DIR)/gen_pattern $(BIN_DIR)/gen_pattern_int \
$(BIN_DIR)/word_pat2char_pat
all: $(BUILD_EXECS) $(BUILD_EXECS_INT) \
$(QUERY_EXECS) $(QUERY_EXECS_INT) \
$(SIZES_EXECS) $(SIZES_EXECS_INT) \
$(HELPER_BINS)
info: $(SIZES_EXECS) $(SIZES_EXECS_INT) $(SIZES) \
$(SIZES_INT) $(HTML_INT) $(HTML) \
info/sizes.txt \
info/sizes_int.txt
info/sizes.txt: $(SIZES)
@cat $(SIZES) > $@
info/sizes_int.txt: $(SIZES)
@cat $(SIZES_INT) > $@
indexes: $(INDEXES) $(INDEXES_INT)
input: $(TC_PATHS) $(TC_PATHS_INT) $(TC_DICT_PATHS)
pattern: input $(PATTERNS) $(BIN_DIR)/gen_pattern $(PATTERNS_INT) $(BIN_DIR)/gen_pattern_int
compression: input $(COMP_FILES)
timing: input indexes pattern $(TIME_FILES) $(TIME_FILES_INT) compression info
@cat $(TIME_FILES) > $(RESULT_FILE)
@cat $(TIME_FILES_INT) > $(RESULT_FILE_INT)
@cd visualize; make
# results/[TC_ID].[IDX_ID].[PAT_LEN].byte
results/%.byte: $(BUILD_EXECS) $(QUERY_EXECS) $(INDEXES) $(PATTERNS)
$(eval TC_ID:=$(call dim,1,$*))
$(eval IDX_ID:=$(call dim,2,$*))
$(eval PAT_LEN:=$(call dim,3,$*))
$(eval TC_NAME:=$(call config_select,test_case.config,$(TC_ID),3))
@echo "# TC_ID = $(TC_ID)" > $@
@echo "# IDX_ID = $(IDX_ID)" >> $@
@echo "# test_case = $(TC_NAME)" >> $@
@echo "Run timing for $(IDX_ID) on $(TC_ID) with patterns of length $(PAT_LEN)"
@$(BIN_DIR)/query_idx_$(IDX_ID) indexes/$(TC_ID).$(IDX_ID).byte \
$(PAT_DIR)/$(TC_ID).$(PAT_LEN).pattern >> $@
# results/[TC_ID].[IDX_ID].[PAT_LEN].byte
results/%.int: $(BUILD_EXECS) $(QUERY_EXECS_INT) $(INDEXES_INT) $(PATTERNS_INT)
$(eval TC_ID:=$(call dim,1,$*))
$(eval IDX_ID:=$(call dim,2,$*))
$(eval PAT_LEN:=$(call dim,3,$*))
$(eval TC_NAME:=$(call config_select,test_case_int.config,$(TC_ID),3))
@echo "# TC_ID = $(TC_ID)" > $@
@echo "# IDX_ID = $(IDX_ID)" >> $@
@echo "# test_case = $(TC_NAME)" >> $@
@echo "Run timing for $(IDX_ID) on $(TC_ID) with patterns of length $(PAT_LEN)"
@$(BIN_DIR)/query_int_idx_$(IDX_ID) indexes/$(TC_ID).$(IDX_ID).int \
$(PAT_DIR)/$(TC_ID).$(PAT_LEN).pattern.int >> $@
# indexes/[TC_ID].[IDX_ID].byte
indexes/%.byte: $(BUILD_EXECS)
$(eval TC_ID:=$(call dim,1,$*))
$(eval IDX_ID:=$(call dim,2,$*))
$(eval TC:=$(call config_select,test_case.config,$(TC_ID),2))
@echo "Building index $(IDX_ID) on $(TC)"
@$(BIN_DIR)/build_idx_$(IDX_ID) $(TC) $(TMP_DIR) $@
# indexes/[TC_ID].[IDX_ID].int
indexes/%.int: $(BUILD_EXECS_INT)
$(eval TC_ID:=$(call dim,1,$*))
$(eval IDX_ID:=$(call dim,2,$*))
$(eval TC:=$(call config_select,test_case_int.config,$(TC_ID),2))
@echo "Building index $(IDX_ID) on $(TC)"
@$(BIN_DIR)/build_int_idx_$(IDX_ID) $(TC) $(TMP_DIR) $@
# info/[TC_ID].[IDX_ID]
info/%.size: $(INDEXES)
$(eval TC_ID:=$(call dim,1,$*))
$(eval IDX_ID:=$(call dim,2,$*))
$(eval TC:=$(call config_select,test_case.config,$(TC_ID),2))
$(eval SIZE:=$(call file_size,$(TC)))
@echo "# TC_ID = $(TC_ID)" > $@
@echo "# IDX_ID = $(IDX_ID)" >> $@
@echo "# text_size = $(SIZE)" >> $@
@echo "Get size of index for $(IDX_ID) on $(TC_ID)"
@$(BIN_DIR)/size_of_idx_$(IDX_ID) indexes/$(TC_ID).$(IDX_ID).byte >> $@
# info/[TC_ID].[IDX_ID]
info/%.size.int: $(INDEXES_INT)
$(eval TC_ID:=$(call dim,1,$*))
$(eval IDX_ID:=$(call dim,2,$*))
$(eval TC:=$(call config_select,test_case_int.config,$(TC_ID),2))
$(eval SIZE:=$(call file_size,$(TC)))
@echo "# TC_ID = $(TC_ID)" > $@
@echo "# IDX_ID = $(IDX_ID)" >> $@
@echo "# text_size = $(SIZE)" >> $@
@echo "Get size of index for $(IDX_ID) on $(TC_ID)"
@$(BIN_DIR)/size_of_int_idx_$(IDX_ID) indexes/$(TC_ID).$(IDX_ID).int >> $@
# info/[TC_ID].[IDX_ID]
info/%.byte.html: $(INDEXES)
$(eval TC_ID:=$(call dim,1,$*))
$(eval IDX_ID:=$(call dim,2,$*))
$(eval TC:=$(call config_select,test_case.config,$(TC_ID),2))
$(eval SIZE:=$(call file_size,$(TC)))
@echo "# TC_ID = $(TC_ID)" > $@
@echo "# IDX_ID = $(IDX_ID)" >> $@
@echo "# text_size = $(SIZE)" >> $@
@echo "Get html of index for $(IDX_ID) on $(TC_ID)"
@$(BIN_DIR)/size_of_idx_$(IDX_ID) indexes/$(TC_ID).$(IDX_ID).byte $@
# info/[TC_ID].[IDX_ID]
info/%.int.html: $(INDEXES)
$(eval TC_ID:=$(call dim,1,$*))
$(eval IDX_ID:=$(call dim,2,$*))
$(eval TC:=$(call config_select,test_case_int.config,$(TC_ID),2))
$(eval SIZE:=$(call file_size,$(TC)))
@echo "# TC_ID = $(TC_ID)" > $@
@echo "# IDX_ID = $(IDX_ID)" >> $@
@echo "# text_size = $(SIZE)" >> $@
@echo "Get html of index for $(IDX_ID) on $(TC_ID)"
@$(BIN_DIR)/size_of_int_idx_$(IDX_ID) indexes/$(TC_ID).$(IDX_ID).int $@
# $(PAT_DIR)/[TC_ID].[PAT_LEN].pattern.int
$(PAT_DIR)/%.pattern.int: $(BIN_DIR)/gen_pattern_int $(BIN_DIR)/word_pat2char_pat
@echo $*
$(eval TC_ID:=$(call dim,1,$*))
$(eval PAT_LEN:=$(call dim,2,$*))
$(eval TC:=$(call config_select,test_case_int.config,$(TC_ID),2))
$(BIN_DIR)/gen_pattern_int $(TC) $(TMP_DIR)/$(TC_ID).pat.csa $(TMP_DIR) $(PAT_LEN) 200 $@
$(eval DIC_PATH:=$(call config_select,dic.config,$(TC_ID),2))
$(BIN_DIR)/word_pat2char_pat $@ $(DIC_PATH) > $@.txt
# $(PAT_DIR)/[TC_ID].[PAT_LEN].pattern
$(PAT_DIR)/%.pattern: $(BIN_DIR)/gen_pattern
@echo $*
$(eval TC_ID:=$(call dim,1,$*))
$(eval PAT_LEN:=$(call dim,2,$*))
$(eval TC:=$(call config_select,test_case.config,$(TC_ID),2))
$(BIN_DIR)/gen_pattern $(TC) $(TMP_DIR)/$(TC_ID).pat.csa $(TMP_DIR) $(PAT_LEN) 200 $@
$(BIN_DIR)/gen_pattern: $(SRC_DIR)/gen_pattern.cpp
@echo "Build pattern generation program"
$(MY_CXX) $(CXX_FLAGS) $(SRC_DIR)/gen_pattern.cpp \
-L$(LIB_DIR) -I$(INC_DIR) -o $@ $(LIBS)
$(BIN_DIR)/gen_pattern_int: $(SRC_DIR)/gen_pattern.cpp
@echo "Build pattern generation program"
$(MY_CXX) $(CXX_FLAGS) $(SRC_DIR)/gen_pattern.cpp \
-DINT_ALPHABET \
-L$(LIB_DIR) -I$(INC_DIR) -o $@ $(LIBS)
$(BIN_DIR)/size_of_idx_%: $(SRC_DIR)/size_of_idx.cpp
$(eval IDX_TYPE:=$(call config_select,index.config,$*,2))
@echo "Build size info program"
$(MY_CXX) $(CXX_FLAGS) $(SRC_DIR)/size_of_idx.cpp \
-DIDX_TYPE="$(IDX_TYPE)" \
-L$(LIB_DIR) -I$(INC_DIR) -o $@ $(LIBS)
$(BIN_DIR)/size_of_int_idx_%: $(SRC_DIR)/size_of_idx.cpp
$(eval IDX_TYPE:=$(call config_select,index_int.config,$*,2))
@echo "Build size info program"
$(MY_CXX) $(CXX_FLAGS) $(SRC_DIR)/size_of_idx.cpp \
-DIDX_TYPE="$(IDX_TYPE)" \
-L$(LIB_DIR) -I$(INC_DIR) -o $@ $(LIBS)
# $(BIN_DIR)/build_idx_[IDX_ID]
$(BIN_DIR)/build_idx_%: $(SRC_DIR)/build_idx.cpp index.config
$(eval IDX_TYPE:=$(call config_select,index.config,$*,2))
@echo "Compiling build_idx_$*"
$(MY_CXX) $(CXX_FLAGS) \
-DIDX_TYPE="$(IDX_TYPE)" \
-L$(LIB_DIR) $(SRC_DIR)/build_idx.cpp \
-I$(INC_DIR) -o $@ $(LIBS)
# $(BIN_DIR)/build_idx_[IDX_ID]
$(BIN_DIR)/build_int_idx_%: $(SRC_DIR)/build_idx.cpp index_int.config
$(eval IDX_TYPE:=$(call config_select,index_int.config,$*,2))
@echo "Compiling build_int_idx_$*"
$(MY_CXX) $(CXX_FLAGS) \
-DIDX_TYPE="$(IDX_TYPE)" \
-L$(LIB_DIR) $(SRC_DIR)/build_idx.cpp \
-I$(INC_DIR) -o $@ $(LIBS)
# Targets for the count experiment. $(BIN_DIR)/query_idx_[IDX_ID]
$(BIN_DIR)/query_idx_%: $(SRC_DIR)/query_idx.cpp index.config
$(eval IDX_TYPE:=$(call config_select,index.config,$*,2))
@echo "Compiling query_idx_$*"
$(MY_CXX) $(CXX_FLAGS) \
-DIDX_ID=\"$*\" -DIDX_TYPE="$(IDX_TYPE)" \
-L$(LIB_DIR) $(SRC_DIR)/query_idx.cpp \
-I$(INC_DIR) -o $@ $(LIBS)
# Targets for the count experiment. $(BIN_DIR)/query_idx_[IDX_ID]
$(BIN_DIR)/query_int_idx_%: $(SRC_DIR)/query_idx.cpp index_int.config
$(eval IDX_TYPE:=$(call config_select,index_int.config,$*,2))
@echo "Compiling query_int_idx_$*"
$(MY_CXX) $(CXX_FLAGS) \
-DIDX_ID=\"$*\" -DIDX_TYPE="$(IDX_TYPE)" \
-L$(LIB_DIR) $(SRC_DIR)/query_idx.cpp \
-I$(INC_DIR) -o $@ $(LIBS)
$(BIN_DIR)/word_pat2char_pat: $(SRC_DIR)/word_pat2char_pat.cpp
@echo "Compiling word_pat2char_pat.cpp"
$(MY_CXX) $(CXX_FLAGS) \
$(SRC_DIR)/word_pat2char_pat.cpp \
-o $@
dic/%:
$(eval URL:=$(call config_filter,dic.config,$@,4))
@$(if $(URL),,\
$(error "No download link for dictionary $@") )
@echo "Download dictionary from $(URL) using curl"
$(eval DEST_DIR:=$(shell dirname $@))
cd $(DEST_DIR); curl -O $(URL)
$(eval FILE:=$(DEST_DIR)/$(notdir $(URL)))
@$(if $(filter-out ".gz",$(FILE)),\
echo "Extract file $(FILE) using gunzip";\
gunzip $(FILE))
../data/%.int.sdsl:
$(eval URL:=$(call config_filter,test_case_int.config,$@,4))
@$(if $(URL),,\
$(error "No download link nor generation program specified for test case $@") )
@echo "Download input from $(URL) using curl"
$(eval DEST_DIR:=$(shell dirname $@))
cd $(DEST_DIR); curl -O $(URL)
$(eval FILE:=$(DEST_DIR)/$(notdir $(URL)))
@$(if $(filter-out ".gz",$(FILE)),\
echo "Extract file $(FILE) using gunzip";\
gunzip $(FILE))
include ../Make.download
clean-build:
@echo "Remove executables"
rm -f $(QUERY_EXECS) $(SIZES_EXECS) $(BUILD_EXECS) \
$(QUERY_EXECS_INT) $(SIZES_EXECS_INT) $(BUILD_EXECS_INT) \
$(HELPER_BINS)
clean: clean-build
@echo "Remove info files and indexes"
rm -f $(INDEXES) $(INDEXES_INT)
cleanresults:
@echo "Remove result files and pattern"
rm -f $(TIME_FILES) \
$(RESULT_FILE) \
$(TIME_FILES_INT) \
$(RESULT_FILE_INT) \
$(SIZES) $(SIZES_INT) \
$(HTML) $(HTML_INT)
rm -f $(PATTERNS) $(PATTERNS_INT)
cleanall: clean cleanresults
@echo "Remove all generated files."
rm -f $(TMP_DIR)/*
rm -f $(PAT_DIR)/*
cd visualize; make clean
|
