1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
|
#include "sdsl/bp_support_algorithm.hpp"
namespace sdsl
{
excess::impl excess::data;
bit_vector
calculate_pioneers_bitmap(const bit_vector& bp, uint64_t block_size)
{
bit_vector pioneer_bitmap(bp.size(), 0);
std::stack<uint64_t> opening_parenthesis;
uint64_t blocks = (bp.size()+block_size-1)/block_size;
// calculate positions of findclose and findopen pioneers
for (uint64_t block_nr = 0; block_nr < blocks; ++block_nr) {
std::map<uint64_t, uint64_t> block_and_position; // for find_open and find_close
std::map<uint64_t, uint64_t> matching_position; // for find_open and find_close
for (uint64_t i=0, j=block_nr*block_size; i < block_size and j < bp.size(); ++i, ++j) {
if (bp[j]) {//opening parenthesis
opening_parenthesis.push(j);
} else { // closing parenthesis
uint64_t position = opening_parenthesis.top();
uint64_t blockpos = position/block_size;
opening_parenthesis.pop();
block_and_position[blockpos] = position;
matching_position[blockpos] = j; // greatest j is pioneer
}
}
for (std::map<uint64_t, uint64_t>::const_iterator it = block_and_position.begin(),
end = block_and_position.end(),
mit = matching_position.begin(); it != end and it->first != block_nr; ++it, ++mit) {
// opening and closing pioneers are symmetric
pioneer_bitmap[it->second] = 1;
pioneer_bitmap[mit->second] = 1;
}
}
// assert that the sequence is balanced
assert(opening_parenthesis.empty());
return pioneer_bitmap;
}
bit_vector
calculate_pioneers_bitmap_succinct(const bit_vector& bp, uint64_t block_size)
{
bit_vector pioneer_bitmap(bp.size(), 0);
sorted_stack_support opening_parenthesis(bp.size());
uint64_t cur_pioneer_block = 0, last_start = 0, last_j = 0, cur_block=0, first_index_in_block=0;
// calculate positions of findclose and findopen pioneers
for (uint64_t j=0, new_block=block_size; j < bp.size(); ++j, --new_block) {
if (!(new_block)) {
cur_pioneer_block = j/block_size;
++cur_block;
first_index_in_block = j;
new_block = block_size;
}
if (bp[j]) { // opening parenthesis
if (/*j < bp.size() is not necessary as the last parenthesis is always a closing one*/
new_block>1 and !bp[j+1]) {
++j; --new_block;
continue;
}
opening_parenthesis.push(j);
} else {
assert(!opening_parenthesis.empty());
uint64_t start = opening_parenthesis.top();
opening_parenthesis.pop();
if (start < first_index_in_block) {
if ((start/block_size)==cur_pioneer_block) {
pioneer_bitmap[last_start] = pioneer_bitmap[last_j] = 0; // override false pioneer
}
pioneer_bitmap[start] = pioneer_bitmap[j] = 1;
cur_pioneer_block = start/block_size;
last_start = start;
last_j = j;
}
}
}
// assert that the sequence is balanced
assert(opening_parenthesis.empty());
return pioneer_bitmap;
}
uint64_t
near_find_close(const bit_vector& bp, const uint64_t i,
const uint64_t block_size)
{
typedef bit_vector::difference_type difference_type;
difference_type excess=1;
const uint64_t end = ((i+1)/block_size+1)*block_size;
const uint64_t l = (((i+1)+7)/8)*8;
const uint64_t r = (end/8)*8;
for (uint64_t j=i+1; j < std::min(end,l); ++j) {
if (bp[j])
++excess;
else {
--excess;
if (excess == 0) {
return j;
}
}
}
const uint64_t* b = bp.data();
for (uint64_t j=l; j<r; j+=8) {
if (excess <= 8) {
assert(excess>0);
uint32_t x = excess::data.min_match_pos_packed[((*(b+(j>>6)))>>(j&0x3F))&0xFF ];
uint8_t p = (x >> ((excess-1)<<2))&0xF;
if (p < 9) {
return j+p;
}
}
excess += excess::data.word_sum[((*(b+(j>>6)))>>(j&0x3F))&0xFF ];
}
for (uint64_t j=std::max(l,r); j < end; ++j) {
if (bp[j])
++excess;
else {
--excess;
if (excess == 0) {
return j;
}
}
}
return i;
}
uint64_t
near_find_closing(const bit_vector& bp, uint64_t i,
uint64_t closings,
const uint64_t block_size)
{
typedef bit_vector::difference_type difference_type;
difference_type excess=0;
difference_type succ_excess=-closings;
const uint64_t end = (i/block_size+1)*block_size;
const uint64_t l = (((i)+7)/8)*8;
const uint64_t r = (end/8)*8;
for (uint64_t j=i; j < std::min(end,l); ++j) {
if (bp[j])
++excess;
else {
--excess;
if (excess == succ_excess) {
return j;
}
}
}
const uint64_t* b = bp.data();
for (uint64_t j=l; j<r; j+=8) {
if (excess-succ_excess <= 8) {
uint32_t x = excess::data.min_match_pos_packed[((*(b+(j>>6)))>>(j&0x3F))&0xFF ];
uint8_t p = (x >> (((excess-succ_excess)-1)<<2))&0xF;
if (p < 9) {
return j+p;
}
}
excess += excess::data.word_sum[((*(b+(j>>6)))>>(j&0x3F))&0xFF ];
}
for (uint64_t j=std::max(l,r); j < end; ++j) {
if (bp[j])
++excess;
else {
--excess;
if (excess == succ_excess) {
return j;
}
}
}
return i-1;
}
uint64_t
near_fwd_excess(const bit_vector& bp, uint64_t i, bit_vector::difference_type rel, const uint64_t block_size)
{
typedef bit_vector::difference_type difference_type;
difference_type excess = rel;
const uint64_t end = (i/block_size+1)*block_size;
const uint64_t l = (((i)+7)/8)*8;
const uint64_t r = (end/8)*8;
for (uint64_t j=i; j < std::min(end,l); ++j) {
excess += 1-2*bp[j];
if (!excess) {
return j;
}
}
excess += 8;
const uint64_t* b = bp.data();
for (uint64_t j=l; j < r; j+=8) {
if (excess >= 0 and excess <= 16) {
uint32_t x = excess::data.near_fwd_pos[(excess<<8) + (((*(b+(j>>6)))>>(j&0x3F))&0xFF) ];
if (x < 8) {
return j+x;
}
}
excess -= excess::data.word_sum[((*(b+(j>>6)))>>(j&0x3F))&0xFF ];
}
excess -= 8;
for (uint64_t j=std::max(l,r); j < end; ++j) {
excess += 1-2*bp[j];
if (!excess) {
return j;
}
}
return i-1;
}
uint64_t
near_rmq(const bit_vector& bp, uint64_t l, uint64_t r, bit_vector::difference_type& min_rel_ex)
{
typedef bit_vector::difference_type difference_type;
const uint64_t l8 = (((l+1)+7)/8)*8;
const uint64_t r8 = (r/8)*8;
difference_type excess = 0;
difference_type min_pos=l;
min_rel_ex = 0;
for (uint64_t j=l+1; j < std::min(l8,r+1); ++j) {
if (bp[j])
++excess;
else {
--excess;
if (excess <= min_rel_ex) {
min_rel_ex = excess;
min_pos = j;
}
}
}
const uint64_t* b = bp.data();
for (uint64_t j=l8; j < r8; j+=8) {
int8_t x = excess::data.min[(((*(b+(j>>6)))>>(j&0x3F))&0xFF)];
if ((excess+x) <= min_rel_ex) {
min_rel_ex = excess+x;
min_pos = j + excess::data.min_pos_max[(((*(b+(j>>6)))>>(j&0x3F))&0xFF)];
}
excess += excess::data.word_sum[((*(b+(j>>6)))>>(j&0x3F))&0xFF];
}
for (uint64_t j=std::max(l8,r8); j<r+1; ++j) {
if (bp[j])
++excess;
else {
--excess;
if (excess <= min_rel_ex) {
min_rel_ex = excess;
min_pos = j;
}
}
}
return min_pos;
}
uint64_t
near_bwd_excess(const bit_vector& bp, uint64_t i, bit_vector::difference_type rel, const uint64_t block_size)
{
typedef bit_vector::difference_type difference_type;
difference_type excess = rel;
const difference_type begin = ((difference_type)(i)/block_size)*block_size;
const difference_type r = ((difference_type)(i)/8)*8;
const difference_type l = ((difference_type)((begin+7)/8))*8;
for (difference_type j=i+1; j >= /*begin*/std::max(r,begin); --j) {
if (bp[j])
++excess;
else
--excess;
if (!excess) return j-1;
}
excess += 8;
const uint64_t* b = bp.data();
for (difference_type j=r-8; j >= l; j-=8) {
if (excess >= 0 and excess <= 16) {
uint32_t x = excess::data.near_bwd_pos[(excess<<8) + (((*(b+(j>>6)))>>(j&0x3F))&0xFF)];
if (x < 8) {
return j+x-1;
}
}
excess += excess::data.word_sum[((*(b+(j>>6)))>>(j&0x3F))&0xFF];
}
excess -= 8;
for (difference_type j=std::min(l, r); j > begin; --j) {
if (bp[j])
++excess;
else
--excess;
if (!excess) return j-1;
}
if (0==begin and -1==rel) {
return -1;
}
return i+1;
}
uint64_t
near_find_open(const bit_vector& bp, uint64_t i, const uint64_t block_size)
{
typedef bit_vector::difference_type difference_type;
difference_type excess = -1;
const difference_type begin = ((difference_type)(i-1)/block_size)*block_size;
const difference_type r = ((difference_type)(i-1)/8)*8;
const difference_type l = ((difference_type)((begin+7)/8))*8;
for (difference_type j=i-1; j >= std::max(r,begin); --j) {
if (bp[j]) {
if (++excess == 0) {
return j;
}
} else
--excess;
}
const uint64_t* b = bp.data();
for (difference_type j=r-8; j >= l; j-=8) {
if (excess >= -8) {
assert(excess<0);
uint32_t x = excess::data.max_match_pos_packed[((*(b+(j>>6)))>>(j&0x3F))&0xFF];
uint8_t p = (x >> ((-excess-1)<<2))&0xF;
if (p < 9) {
return j+p;
}
}
excess += excess::data.word_sum[((*(b+(j>>6)))>>(j&0x3F))&0xFF];
}
for (difference_type j=std::min(l, r)-1; j >= begin; --j) {
if (bp[j]) {
if (++excess == 0) {
return j;
}
} else
--excess;
}
return i;
}
uint64_t
near_find_opening(const bit_vector& bp, uint64_t i, const uint64_t openings,const uint64_t block_size)
{
typedef bit_vector::difference_type difference_type;
difference_type excess = 0;
difference_type succ_excess = openings;
const difference_type begin = ((difference_type)(i)/block_size)*block_size;
const difference_type r = ((difference_type)(i)/8)*8;
const difference_type l = ((difference_type)((begin+7)/8))*8;
for (difference_type j=i; j >= std::max(r,begin); --j) {
if (bp[j]) {
if (++excess == succ_excess) {
return j;
}
} else
--excess;
}
const uint64_t* b = bp.data();
for (difference_type j=r-8; j >= l; j-=8) {
if (succ_excess-excess <= 8) {
assert(succ_excess-excess>0);
uint32_t x = excess::data.max_match_pos_packed[((*(b+(j>>6)))>>(j&0x3F))&0xFF];
uint8_t p = (x >> ((succ_excess-excess-1)<<2))&0xF;
if (p < 9) {
return j+p;
}
}
excess += excess::data.word_sum[((*(b+(j>>6)))>>(j&0x3F))&0xFF];
}
for (difference_type j=std::min(l, r)-1; j >= begin; --j) {
if (bp[j]) {
if (++excess == succ_excess) {
return j;
}
} else
--excess;
}
return i+1;
}
uint64_t
near_enclose(const bit_vector& bp, uint64_t i, const uint64_t block_size)
{
uint64_t opening_parentheses = 1;
for (uint64_t j=i; j+block_size-1 > i and j>0; --j) {
if (bp[j-1]) {
++opening_parentheses;
if (opening_parentheses == 2) {
return j-1;
}
} else
--opening_parentheses;
}
return i;
}
uint64_t
near_rmq_open(const bit_vector& bp, const uint64_t begin, const uint64_t end)
{
typedef bit_vector::difference_type difference_type;
difference_type min_excess = end-begin+1, ex = 0;
uint64_t result = end;
const uint64_t l = ((begin+7)/8)*8;
const uint64_t r = (end/8)*8;
for (uint64_t k=begin; k < std::min(end,l); ++k) {
if (bp[k]) {
++ex;
if (ex <= min_excess) {
result = k;
min_excess = ex;
}
} else {
--ex;
}
}
const uint64_t* b = bp.data();
for (uint64_t k = l; k < r; k+=8) {
uint16_t x = excess::data.min_open_excess_info[((*(b+(k>>6)))>>(k&0x3F))&0xFF];
int8_t ones = (x>>12);
if (ones) {
int8_t min_ex = (x&0xFF)-8;
if (ex+min_ex <= min_excess) {
result = k + ((x>>8)&0xF);
min_excess = ex+min_ex;
}
}
ex += ((ones<<1)-8);
}
for (uint64_t k=std::max(r,l); k < end; ++k) {
if (bp[k]) {
++ex;
if (ex <= min_excess) {
result = k;
min_excess = ex;
}
} else {
--ex;
}
}
if (min_excess <= ex)
return result;
return end;
}
}
|