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#include "sdsl/wavelet_trees.hpp"
#include "gtest/gtest.h"
#include <vector>
#include <string>
#include <algorithm> // for std::min
#include <random>
namespace
{
using namespace sdsl;
using namespace std;
typedef int_vector<>::size_type size_type;
string test_file;
string temp_file;
string temp_dir;
bool in_memory;
template<class T>
class wt_byte_test : public ::testing::Test { };
using testing::Types;
typedef Types<
wt_pc<balanced_shape>
,wt_blcd<rrr_vector<63>>
,wt_blcd<bit_vector_il<>>
,wt_blcd<bit_vector>
,wt_huff<bit_vector_il<>>
,wt_huff<bit_vector, rank_support_v<>>
,wt_huff<bit_vector, rank_support_v5<>>
,wt_huff<rrr_vector<63>>
,wt_rlmn<>
,wt_rlmn<bit_vector>
,wt_gmr_rs<>
,wt_hutu<bit_vector_il<>>
,wt_hutu<bit_vector, rank_support_v<>>
,wt_hutu<bit_vector, rank_support_v5<>>
,wt_hutu<rrr_vector<63>>
> Implementations;
TYPED_TEST_CASE(wt_byte_test, Implementations);
TYPED_TEST(wt_byte_test, create_and_store)
{
static_assert(sdsl::util::is_regular<TypeParam>::value, "Type is not regular");
TypeParam wt;
construct(wt, test_file, 1);
ASSERT_TRUE(store_to_file(wt, temp_file));
}
//! Test sigma
TYPED_TEST(wt_byte_test, sigma)
{
TypeParam wt;
ASSERT_TRUE(load_from_file(wt, temp_file));
int_vector<8> text;
ASSERT_TRUE(load_vector_from_file(text, test_file, 1));
ASSERT_EQ(text.size(), wt.size());
bit_vector occur(256, 0);
uint16_t sigma = 0;
for (size_type j=0; j<text.size(); ++j) {
if (!occur[(unsigned char)text[j]]) {
occur[(unsigned char)text[j]] = 1;
++sigma;
}
}
ASSERT_EQ(sigma, wt.sigma);
}
template<class t_wt>
void compare_wt(const int_vector<8>& text, const t_wt& wt)
{
ASSERT_EQ(text.size(), wt.size());
for (size_type j=0; j<text.size(); ++j) {
ASSERT_EQ((typename t_wt::value_type)text[j], wt[j])<<" j="<<j;
}
}
//! Test Access method, Copy-construtor, Move-constructor, Copy-assign and Move-assign
TYPED_TEST(wt_byte_test, access_copy_move_and_swap)
{
TypeParam wt;
ASSERT_TRUE(load_from_file(wt, temp_file));
int_vector<8> text;
ASSERT_TRUE(load_vector_from_file(text, test_file, 1));
compare_wt(text, wt);
// Copy-constructor
TypeParam wt2(wt);
compare_wt(text, wt2);
// Move-constructor
TypeParam wt3(std::move(wt2));
compare_wt(text, wt3);
// Copy-Assign
TypeParam wt4;
wt4 = wt3;
compare_wt(text, wt4);
// Move-Assign
TypeParam wt5;
wt5 = std::move(wt4);
compare_wt(text, wt5);
// Swap
TypeParam wt6;
wt6.swap(wt5);
compare_wt(text, wt6);
}
//! Test rank methods
TYPED_TEST(wt_byte_test, rank)
{
TypeParam wt;
ASSERT_TRUE(load_from_file(wt, temp_file));
int_vector<8> text;
ASSERT_TRUE(load_vector_from_file(text, test_file, 1));
vector<size_type> cnt(256, 0);
ASSERT_EQ(text.size(), wt.size());
for (size_type j=0; j < wt.size(); ++j) {
cnt[text[j]]++;
ASSERT_EQ(cnt[text[j]], wt.rank(j+1, text[j]))<< " j = "<<j<<" text[j]"<<text[j];
}
std::mt19937_64 rng;
std::uniform_int_distribution<uint64_t> distribution(0, wt.size());
auto dice = bind(distribution, rng);
// Do random queries for all characters that do not occur in the string
for (size_type j=0; j<cnt.size(); ++j) {
if (cnt[j] == 0) {
for (size_type k=0; k<1000; ++k) {
size_type pos = dice();
ASSERT_EQ((size_type)0, wt.rank(pos, (unsigned char)j))<<" pos="<<pos;
}
}
}
// Test rank(size(), c) for each character c
for (size_type c=0; c < 256; ++c) {
ASSERT_EQ(cnt[c], wt.rank(wt.size(), (unsigned char)c))<<" c="<<c;
}
}
//! Test select methods
TYPED_TEST(wt_byte_test, select)
{
TypeParam wt;
ASSERT_TRUE(load_from_file(wt, temp_file));
int_vector<8> text;
ASSERT_TRUE(load_vector_from_file(text, test_file, 1));
vector<size_type> cnt(256, 0);
ASSERT_EQ(text.size(), wt.size());
for (size_type j=0; j<text.size(); ++j) {
cnt[text[j]]++;
ASSERT_EQ(j, wt.select(cnt[text[j]], text[j]))<< " j = "<<j<<" text[j] = "<<text[j];
}
}
//! Test inverse select method
TYPED_TEST(wt_byte_test, inverse_select)
{
TypeParam wt;
ASSERT_TRUE(load_from_file(wt, temp_file));
int_vector<8> text;
ASSERT_TRUE(load_vector_from_file(text, test_file, 1));
std::vector<size_type> cnt(256, 0);
ASSERT_EQ(text.size(), wt.size());
for (size_type j=0; j<text.size(); ++j) {
auto rc = wt.inverse_select(j);
ASSERT_EQ(cnt[text[j]], rc.first);
ASSERT_EQ(text[j], rc.second);
cnt[text[j]]++;
}
}
template<class t_wt>
void
test_interval_symbols(typename std::enable_if<!(has_node_type<t_wt>::value),
t_wt>::type&)
{
// interval_symbols not implemented
}
template<class t_wt>
void
test_interval_symbols(typename std::enable_if<has_node_type<t_wt>::value,
t_wt>::type& wt)
{
typedef typename t_wt::value_type value_type;
ASSERT_TRUE(load_from_file(wt, temp_file));
int_vector<8> text;
ASSERT_TRUE(load_vector_from_file(text, test_file, 1));
std::mt19937_64 rng;
std::uniform_int_distribution<uint64_t> distribution(0, wt.size());
auto dice = bind(distribution, rng);
size_type k;
std::vector<value_type> cs(wt.sigma);
std::vector<size_type> rank_c_i(wt.sigma);
std::vector<size_type> rank_c_j(wt.sigma);
for (size_type t=0; t<(wt.size()/100+100); ++t) {
size_type i = dice(), j = dice();
if (i>j) {
std::swap(j,i);
}
interval_symbols(wt, i, j, k, cs, rank_c_i, rank_c_j);
size_type symbols = (j-i);
for (size_type m = 0; m<k; ++m) {
ASSERT_EQ(wt.rank(i, cs[m]), rank_c_i[m]);
ASSERT_EQ(wt.rank(j, cs[m]), rank_c_j[m]);
ASSERT_LT((size_type)0, rank_c_j[m]-rank_c_i[m]);
symbols -= (rank_c_j[m]-rank_c_i[m]);
if (m>0 and t_wt::lex_ordered) {
ASSERT_LT(cs[m-1],cs[m]);
}
}
ASSERT_EQ((size_type)0, symbols);
if (!t_wt::lex_ordered) {
sort(cs.begin(), cs.begin()+k);
for (size_type m=1; m<k; m++) {
ASSERT_LT(cs[m-1], cs[m]);
}
}
}
}
//! Test interval symbols method
TYPED_TEST(wt_byte_test, interval_symbols)
{
TypeParam wt;
test_interval_symbols<TypeParam>(wt);
}
template<class t_wt>
void
test_symbol_gte(typename enable_if<!(t_wt::lex_ordered), t_wt>::type&)
{
// symbol_gte not implemented
}
template<class t_wt>
void
test_symbol_gte(typename enable_if<t_wt::lex_ordered, t_wt>::type& wt)
{
using value_type = typename t_wt::value_type;
ASSERT_TRUE(load_from_file(wt, temp_file));
int_vector<8> iv;
ASSERT_TRUE(load_vector_from_file(iv, test_file, 1));
ASSERT_EQ(iv.size(), wt.size());
mt19937_64 rng;
value_type min = numeric_limits<value_type>::max(), max = 0;
std::set<value_type> syms;
for (size_type j=0; j < iv.size(); ++j) {
if (min>iv[j]) min = iv[j];
if (max<iv[j]) max = iv[j];
syms.insert(iv[j]);
}
if (iv.size() == 0) {
return;
}
// check symbols that are in there also are reported as "equal"
auto itr = syms.begin();
auto end = syms.end();
while (itr != end) {
auto value = *itr;
auto ret = symbol_gte(wt,value);
ASSERT_TRUE(ret.first);
ASSERT_EQ(value,ret.second);
++itr;
}
// check symbols symbols that are smaller than than min
for (size_t i=0; i<min; i++) {
auto ret = symbol_gte(wt,i);
ASSERT_TRUE(ret.first);
ASSERT_EQ(ret.second,min);
}
// check symbols that are larget than max
value_type test_max = numeric_limits<value_type>::max();
for (value_type i=test_max; i>max; i--) {
auto ret = symbol_gte(wt,i);
ASSERT_FALSE(ret.first);
}
// check values in between that do not exist
for (size_t i=min; i<max; i++) {
auto itr = syms.find(i);
if (itr == syms.end()) {
size_t j=i+1;
auto next = syms.find(j);
while (next == syms.end()) {
next = syms.find(j+1);
j++;
}
if (next != syms.end()) {
auto next_val = *next;
auto ret = symbol_gte(wt,i);
ASSERT_TRUE(ret.first);
ASSERT_EQ(ret.second,next_val);
}
}
}
}
//! Test the load method and intersect
TYPED_TEST(wt_byte_test, symbol_gte)
{
TypeParam wt;
test_symbol_gte<TypeParam>(wt);
}
template<class t_wt>
void
test_symbol_lte(typename enable_if<!(t_wt::lex_ordered), t_wt>::type&)
{
// symbol_lte not implemented
}
template<class t_wt>
void
test_symbol_lte(typename enable_if<t_wt::lex_ordered, t_wt>::type& wt)
{
using value_type = typename t_wt::value_type;
ASSERT_TRUE(load_from_file(wt, temp_file));
int_vector<8> iv;
ASSERT_TRUE(load_vector_from_file(iv, test_file, 1));
ASSERT_EQ(iv.size(), wt.size());
mt19937_64 rng;
value_type min = numeric_limits<value_type>::max(), max = 0;
std::set<value_type> syms;
for (size_type j=0; j < iv.size(); ++j) {
if (min>iv[j]) min = iv[j];
if (max<iv[j]) max = iv[j];
syms.insert(iv[j]);
}
if (iv.size() == 0) {
return;
}
// check symbols that are in there also are reported as "equal"
auto itr = syms.begin();
auto end = syms.end();
while (itr != end) {
auto value = *itr;
auto ret = symbol_lte(wt,value);
ASSERT_TRUE(ret.first);
ASSERT_EQ(value,ret.second);
++itr;
}
// check symbols symbols that are smaller than than min
for (size_t i=0; i<min; i++) {
auto ret = symbol_lte(wt,i);
ASSERT_FALSE(ret.first);
//ASSERT_EQ(ret.second,min);
}
// check symbols that are larget than max
value_type test_max = numeric_limits<value_type>::max();
for (size_t i=test_max; i>max; i--) {
auto ret = symbol_lte(wt,i);
ASSERT_TRUE(ret.first);
ASSERT_EQ(ret.second,max);
}
// check values in between that do not exist
for (size_t i=min+1; i<max; i++) {
auto itr = syms.find(i);
if (itr == syms.end()) {
size_t j=i-1;
auto prev = syms.find(j);
while (prev == syms.end()) {
prev = syms.find(j-1);
j--;
}
if (prev != syms.end()) {
auto prev_val = *prev;
auto ret = symbol_lte(wt,i);
ASSERT_TRUE(ret.first);
ASSERT_EQ(ret.second,prev_val);
}
}
}
}
//! Test the load method and intersect
TYPED_TEST(wt_byte_test, symbol_lte)
{
TypeParam wt;
test_symbol_lte<TypeParam>(wt);
}
template<class t_wt>
void
test_range_unique_values(typename enable_if<!(t_wt::lex_ordered), t_wt>::type&)
{
// test_range_unique_values not implemented
}
template<class t_wt>
void
test_range_unique_values(typename enable_if<t_wt::lex_ordered, t_wt>::type& wt)
{
using value_type = typename t_wt::value_type;
ASSERT_TRUE(load_from_file(wt, temp_file));
int_vector<8> iv;
ASSERT_TRUE(load_vector_from_file(iv, test_file, 1));
ASSERT_EQ(iv.size(), wt.size());
value_type min = numeric_limits<value_type>::max(), max = 0;
std::set<value_type> syms;
for (size_type j=0; j < iv.size(); ++j) {
if (min>iv[j]) min = iv[j];
if (max<iv[j]) max = iv[j];
syms.insert(iv[j]);
}
if (iv.size() == 0) {
return;
}
// try 128 random queries
std::mt19937_64 rng;
std::uniform_int_distribution<uint64_t> x_dist(0, wt.size()-1);
std::uniform_int_distribution<uint64_t> y_dist(0, max);
auto xdice = bind(x_dist, rng);
auto ydice = bind(y_dist, rng);
for (size_t i=0; i<128; i++) {
size_t x_i = xdice();
size_t x_j = xdice();
if (x_i>x_j) std::swap(x_i,x_j);
size_t y_i = ydice();
size_t y_j = ydice();
if (y_i>y_j) std::swap(y_i,y_j);
auto uniq_values = restricted_unique_range_values(wt,x_i,x_j,y_i,y_j);
/* verify */
std::set<value_type> syms;
for (size_t j=x_i; j<=x_j; j++) {
if (iv[j] >= y_i && iv[j] <= y_j) syms.insert(iv[j]);
}
auto itr = syms.begin();
auto end = syms.end();
size_t r = 0;
while (itr != end) {
auto value = *itr;
ASSERT_EQ(value,uniq_values[r]);
r++;
itr++;
}
}
}
//! Test the load method and intersect
TYPED_TEST(wt_byte_test, restricted_unique_range_values)
{
TypeParam wt;
test_range_unique_values<TypeParam>(wt);
}
template<class t_wt>
void
test_lex_count(typename std::enable_if<!(t_wt::lex_ordered), t_wt>::type&)
{
// lex_count not implemented
}
template<class t_wt>
void
test_lex_count(typename std::enable_if<t_wt::lex_ordered, t_wt>::type& wt)
{
typedef typename t_wt::value_type value_type;
ASSERT_TRUE(load_from_file(wt, temp_file));
int_vector<8> text;
ASSERT_TRUE(load_vector_from_file(text, test_file, 1));
if (wt.size()) {
std::mt19937_64 rng;
std::uniform_int_distribution<uint64_t> distribution(0, wt.size());
auto dice = bind(distribution, rng);
for (size_type t=0; t<1000; ++t) {
size_type i = dice();
size_type j = dice();
if (j<i) {
std::swap(j,i);
}
std::vector<size_type> rank_c_i_n(256,0);
std::vector<size_type> rank_c_j_n(256,0);
for (size_type c=0; c<256; ++c) {
rank_c_i_n[c] = wt.rank(i,(value_type)c);
rank_c_j_n[c] = wt.rank(j,(value_type)c);
}
size_type num_i_s = 0;
size_type num_j_s = 0;
size_type num_c = 0;
size_type num_s = 0;
size_type num_g = j-i;
for (size_type c=0; c<256; ++c) {
// Test lex_count
num_s += num_c;
num_c = rank_c_j_n[c]-rank_c_i_n[c];
num_g -= num_c;
auto res = wt.lex_count(i, j, (value_type)c);
ASSERT_EQ(rank_c_i_n[c], std::get<0>(res));
ASSERT_EQ(num_s, std::get<1>(res));
ASSERT_EQ(num_g, std::get<2>(res));
// Test lex_smaller_count
auto res2 = wt.lex_smaller_count(i, (value_type)c);
ASSERT_EQ(rank_c_i_n[c], std::get<0>(res2)) << "lex_smaller_count(" << i << "," << c << ")";
ASSERT_EQ(num_i_s, std::get<1>(res2)) << "lex_smaller_count(" << i << "," << c << ")";
num_i_s += rank_c_i_n[c];
auto res3 = wt.lex_smaller_count(j, (value_type)c);
ASSERT_EQ(rank_c_j_n[c], std::get<0>(res3)) << "lex_smaller_count(" << i << "," << c << ")";
ASSERT_EQ(num_j_s, std::get<1>(res3)) << "lex_smaller_count(" << i << "," << c << ")";
num_j_s += rank_c_j_n[c];
}
}
}
}
//! Test lex_count method
TYPED_TEST(wt_byte_test, lex_count)
{
TypeParam wt;
test_lex_count<TypeParam>(wt);
}
TYPED_TEST(wt_byte_test, create_partially_test)
{
int_vector_buffer<8> text_buf(test_file, std::ios::in, 1024*1024, 8, true);
int_vector<8> text;
ASSERT_TRUE(load_vector_from_file(text, test_file, 1));
size_type n = min(text.size(), (size_type)50);
text.resize(n);
TypeParam wt(text_buf, n);
compare_wt(text, wt);
}
TYPED_TEST(wt_byte_test, delete_)
{
sdsl::remove(temp_file);
}
} // namespace
int main(int argc, char** argv)
{
::testing::InitGoogleTest(&argc, argv);
if (argc < 3) {
// LCOV_EXCL_START
cout << "Usage: " << argv[0] << " test_file temp_file tmp_dir [in-memory]" << endl;
cout << " (1) Generates a WT out of test_file; stores it in temp_file." << endl;
cout << " If `in-memory` is specified, the in-memory construction is tested." << endl;
cout << " (2) Performs tests." << endl;
cout << " (3) Deletes temp_file." << endl;
return 1;
// LCOV_EXCL_STOP
}
test_file = argv[1];
temp_file = argv[2];
temp_dir = argv[3];
in_memory = argc > 4;
if (in_memory) {
int_vector<8> data;
load_vector_from_file(data, test_file, 1);
test_file = ram_file_name(test_file);
store_to_plain_array<uint8_t>(data, test_file);
temp_file = ram_file_name(temp_file);
}
return RUN_ALL_TESTS();
}
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