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Author: Andreas Tille <tille@debian.org>
Last-Update: Fri, 27 Jan 2017 13:18:48 +0100
Description: Create dynamic library
Forwarded: not-needed
--- a/src/Makefile.am
+++ b/src/Makefile.am
@@ -1,7 +1,8 @@
-noinst_LIBRARIES = libseqlib.a
+lib_LTLIBRARIES = libseqlib.la
-libseqlib_a_CPPFLAGS = -I/usr/include/fml -Wno-sign-compare
+libseqlib_la_CPPFLAGS = -I/usr/include -I/usr/include/htslib -I/usr/include/fml -Wno-sign-compare
-libseqlib_a_SOURCES = FastqReader.cpp BFC.cpp ReadFilter.cpp SeqPlot.cpp ssw_cpp.cpp ssw.c \
+libseqlib_la_SOURCES = FastqReader.cpp BFC.cpp ReadFilter.cpp SeqPlot.cpp ssw_cpp.cpp ssw.c \
GenomicRegion.cpp RefGenome.cpp BamWriter.cpp BamReader.cpp \
BWAWrapper.cpp BamRecord.cpp FermiAssembler.cpp BamHeader.cpp jsoncpp.cpp
+libseqlib_la_LDFLAGS = -version-info @LIB_VERSION@ -lfml `@PKG_CONFIG@ --libs htslib`
--- a/configure.ac
+++ b/configure.ac
@@ -7,10 +7,16 @@ AC_CONFIG_HEADER([config.h])
AM_MAINTAINER_MODE([disable])
##m4_include([m4/m4_ax_openmp.m4])
+LIB_VERSION=2:0
+
+AC_SUBST([VERSION])
+AC_SUBST([LIB_VERSION])
+
# Checks for programs.
AC_PROG_CXX ## test for cpp compiler
AC_PROG_CC ## test for C compiler
AC_PROG_RANLIB ## required if libraries are built in package
+AC_PROG_LIBTOOL
# Check for headers
AC_LANG([C++])
@@ -32,6 +38,8 @@ if test "$enable_development"; then
fail_on_warning="-Werror"
fi
+PKG_CHECK_MODULES([hts], [htslib])
+
# Set compiler flags.
AC_SUBST(AM_CXXFLAGS, "-g $fail_on_warning -std=c++11 -Wno-unknown-pragmas")
AC_SUBST(CXXFLAGS, "$CXXFLAGS")
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