File: use_debian_packaged_libs.patch

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libseqlib 1.2.0%2Bdfsg-9
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Author: Andreas Tille <tille@debian.org>
Last-Update: Fri, 27 Jan 2017 13:18:48 +0100
Description: Skip subdirs in favour of Debian packaged development
 libraries and do not use broken install target
Forwarded: not-needed

--- libseqlib.orig/Makefile.am
+++ libseqlib/Makefile.am
@@ -1,8 +1,8 @@
 AUTOMAKE_OPTIONS = foreign
-SUBDIRS = bwa htslib fermi-lite src
+SUBDIRS = src
 
 install:  
-	mkdir -p lib && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a lib
+	echo "mkdir -p lib && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a lib"
 
 seqtools:
 	mkdir -p bin && cd src/seqtools && make && mv seqtools ../../bin