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/*
* Copyright 2007 - 2018 ETH Zuerich, CISD and SIS.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package ch.systemsx.cisd.hdf5;
import static hdf.hdf5lib.HDF5Constants.H5T_BITFIELD;
import static hdf.hdf5lib.HDF5Constants.H5T_COMPOUND;
import static hdf.hdf5lib.HDF5Constants.H5T_ENUM;
import static hdf.hdf5lib.HDF5Constants.H5T_FLOAT;
import static hdf.hdf5lib.HDF5Constants.H5T_INTEGER;
import static hdf.hdf5lib.HDF5Constants.H5T_OPAQUE;
import static hdf.hdf5lib.HDF5Constants.H5T_REFERENCE;
import static hdf.hdf5lib.HDF5Constants.H5T_STRING;
import java.util.BitSet;
import java.util.Map;
import ch.systemsx.cisd.base.mdarray.MDArray;
import ch.systemsx.cisd.base.mdarray.MDByteArray;
import ch.systemsx.cisd.base.mdarray.MDDoubleArray;
import ch.systemsx.cisd.base.mdarray.MDFloatArray;
import ch.systemsx.cisd.base.mdarray.MDIntArray;
import ch.systemsx.cisd.base.mdarray.MDLongArray;
import ch.systemsx.cisd.base.mdarray.MDShortArray;
import ch.systemsx.cisd.hdf5.HDF5CompoundByteifyerFactory.IHDF5CompoundMemberBytifyerFactory;
/**
* Identifies the class of a data type. Note that for array types the class of the elements is
* identified.
*
* @author Bernd Rinn
*/
public enum HDF5DataClass
{
// Implementation note: The order matters! ENUM needs to be before INTEGER, as H5Tdetect_class
// will return TRUE for ENUM arrays when trying to detect an INTEGER class.
BITFIELD(H5T_BITFIELD, new BasicJavaTypeProvider(BitSet.class, null, null, null)), ENUM(
H5T_ENUM, new BasicJavaTypeProvider(HDF5EnumerationValue.class,
HDF5EnumerationValueArray.class, null, null)), INTEGER(H5T_INTEGER,
new IntJavaTypeProvider()), FLOAT(H5T_FLOAT, new FloatJavaTypeProvider()), STRING(
H5T_STRING, new BasicJavaTypeProvider(String.class, String[].class, String[][].class,
MDArray.class)), OPAQUE(H5T_OPAQUE, new BasicJavaTypeProvider(byte.class,
byte[].class, byte[][].class, MDByteArray.class)), BOOLEAN(-1,
new BasicJavaTypeProvider(boolean.class, BitSet.class, null, null)), COMPOUND(
H5T_COMPOUND, new BasicJavaTypeProvider(Map.class, Map[].class, Map[][].class,
MDArray.class)), REFERENCE(H5T_REFERENCE, new BasicJavaTypeProvider(
String.class, String[].class, String[][].class, MDArray.class)), OTHER(-1,
new BasicJavaTypeProvider(null, null, null, null));
/**
* A role that can provide a java type for a data class, rank and element size.
*/
interface IHDF5JavaTypeProvider
{
Class<?> tryGetJavaType(int rank, int elementSize, HDF5DataTypeVariant typeVariantOrNull);
}
private final int id;
private final IHDF5JavaTypeProvider typeProvider;
HDF5DataClass(int id, IHDF5JavaTypeProvider typeProvider)
{
this.id = id;
this.typeProvider = typeProvider;
}
int getId()
{
return id;
}
/**
* Returns a {@link IHDF5JavaTypeProvider} that returns the default Java type for this data
* class.
* <p>
* Overriding the default for particular choices should be done by one of the
* {@link IHDF5CompoundMemberBytifyerFactory}s in
* {@link IHDF5CompoundMemberBytifyerFactory#tryGetOverrideJavaType(HDF5DataClass, int, int, HDF5DataTypeVariant)}.
*/
IHDF5JavaTypeProvider getJavaTypeProvider()
{
return typeProvider;
}
/**
* Returns the {@link HDF5DataClass} for the given data <var>classId</var>.
* <p>
* <b>Note:</b> This method will never return {@link #BOOLEAN}, but instead it will return
* {@link #ENUM} for a boolean value as boolean values are actually enums in the HDF5 file.
*/
static HDF5DataClass classIdToDataClass(final int classId)
{
for (HDF5DataClass clazz : values())
{
if (clazz.id == classId)
{
return clazz;
}
}
return OTHER;
}
//
// Auxiliary classes
//
private static class BasicJavaTypeProvider implements IHDF5JavaTypeProvider
{
private final Class<?> javaTypeScalarOrNull;
private final Class<?> javaType1DArrayOrNull;
private final Class<?> javaType2DArrayOrNull;
private final Class<?> javaTypeMDArrayOrNull;
BasicJavaTypeProvider(Class<?> javaTypeScalarOrNull, Class<?> javaType1DArrayOrNull,
Class<?> javaType2DArrayOrNull, Class<?> javaTypeMDArrayOrNull)
{
this.javaTypeScalarOrNull = javaTypeScalarOrNull;
this.javaType1DArrayOrNull = javaType1DArrayOrNull;
this.javaType2DArrayOrNull = javaType2DArrayOrNull;
this.javaTypeMDArrayOrNull = javaTypeMDArrayOrNull;
}
@Override
public Class<?> tryGetJavaType(int rank, int elementSize,
HDF5DataTypeVariant typeVariantOrNull)
{
if (rank == 0)
{
return javaTypeScalarOrNull;
} else if (rank == 1)
{
return javaType1DArrayOrNull;
} else if (rank == 2)
{
return javaType2DArrayOrNull;
} else
{
return javaTypeMDArrayOrNull;
}
}
}
private static class IntJavaTypeProvider implements IHDF5JavaTypeProvider
{
@Override
public Class<?> tryGetJavaType(int rank, int elementSize,
HDF5DataTypeVariant typeVariantOrNull)
{
if (rank == 0)
{
switch (elementSize)
{
case 1:
return byte.class;
case 2:
return short.class;
case 4:
return int.class;
case 8:
return long.class;
default:
return null;
}
} else if (rank == 1)
{
switch (elementSize)
{
case 1:
return byte[].class;
case 2:
return short[].class;
case 4:
return int[].class;
case 8:
return long[].class;
default:
return null;
}
} else if (rank == 2)
{
switch (elementSize)
{
case 1:
return byte[][].class;
case 2:
return short[][].class;
case 4:
return int[][].class;
case 8:
return long[][].class;
default:
return null;
}
} else
{
switch (elementSize)
{
case 1:
return MDByteArray.class;
case 2:
return MDShortArray.class;
case 4:
return MDIntArray.class;
case 8:
return MDLongArray.class;
default:
return null;
}
}
}
}
private static class FloatJavaTypeProvider implements IHDF5JavaTypeProvider
{
@Override
public Class<?> tryGetJavaType(int rank, int elementSize,
HDF5DataTypeVariant typeVariantOrNull)
{
if (rank == 0)
{
switch (elementSize)
{
case 4:
return float.class;
case 8:
return double.class;
default:
return null;
}
} else if (rank == 1)
{
switch (elementSize)
{
case 4:
return float[].class;
case 8:
return double[].class;
default:
return null;
}
} else if (rank == 2)
{
switch (elementSize)
{
case 4:
return float[][].class;
case 8:
return double[][].class;
default:
return null;
}
} else
{
switch (elementSize)
{
case 4:
return MDFloatArray.class;
case 8:
return MDDoubleArray.class;
default:
return null;
}
}
}
}
}
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