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/*
* Copyright 2007 - 2018 ETH Zuerich, CISD and SIS.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package ch.systemsx.cisd.hdf5;
import java.lang.reflect.Array;
import java.util.Iterator;
import hdf.hdf5lib.exceptions.HDF5JavaException;
import ch.systemsx.cisd.base.convert.NativeData;
import ch.systemsx.cisd.base.convert.NativeData.ByteOrder;
import ch.systemsx.cisd.hdf5.HDF5EnumerationType.EnumStorageForm;
import hdf.hdf5lib.HDFNativeData;
/**
* A class the represents an array of HDF enumeration values.
*
* @author Bernd Rinn
*/
public class HDF5EnumerationValueArray implements Iterable<String>
{
private final HDF5EnumerationType type;
private final int length;
private EnumStorageForm storageForm;
private byte[] bArrayOrNull;
private short[] sArrayOrNull;
private int[] iArrayOrNull;
HDF5EnumerationValueArray(HDF5EnumerationType type, Object array)
throws IllegalArgumentException
{
this.type = type;
if (array instanceof byte[])
{
final byte[] bArray = (byte[]) array;
this.length = bArray.length;
setOrdinalArray(bArray);
} else if (array instanceof short[])
{
final short[] sArray = (short[]) array;
this.length = sArray.length;
setOrdinalArray(sArray);
} else if (array instanceof int[])
{
final int[] iArray = (int[]) array;
this.length = iArray.length;
setOrdinalArray(iArray);
} else
{
throw new IllegalArgumentException("array is of illegal type "
+ array.getClass().getCanonicalName());
}
}
/**
* Creates an enumeration value array.
*
* @param type The enumeration type of this value.
* @param ordinalArray The array of ordinal values in the <var>type</var>.
* @throws IllegalArgumentException If any of the ordinals in the <var>ordinalArray</var> is
* outside of the range of allowed values of the <var>type</var>.
*/
public HDF5EnumerationValueArray(HDF5EnumerationType type, byte[] ordinalArray)
throws IllegalArgumentException
{
this.type = type;
this.length = ordinalArray.length;
setOrdinalArray(ordinalArray);
}
/**
* Creates an enumeration value array.
*
* @param type The enumeration type of this value.
* @param ordinalArray The array of ordinal values in the <var>type</var>.
* @throws IllegalArgumentException If any of the ordinals in the <var>ordinalArray</var> is
* outside of the range of allowed values of the <var>type</var>.
*/
public HDF5EnumerationValueArray(HDF5EnumerationType type, short[] ordinalArray)
throws IllegalArgumentException
{
this.type = type;
this.length = ordinalArray.length;
setOrdinalArray(ordinalArray);
}
/**
* Creates an enumeration value array.
*
* @param type The enumeration type of this value.
* @param ordinalArray The array of ordinal values in the <var>type</var>.
* @throws IllegalArgumentException If any of the ordinals in the <var>ordinalArray</var> is
* outside of the range of allowed values of the <var>type</var>.
*/
public HDF5EnumerationValueArray(HDF5EnumerationType type, int[] ordinalArray)
throws IllegalArgumentException
{
this.type = type;
this.length = ordinalArray.length;
setOrdinalArray(ordinalArray);
}
/**
* Creates an enumeration value array.
*
* @param type The enumeration type of this value.
* @param valueArray The array of enum values (each one needs to be one of the values of
* <var>type</var>).
* @throws IllegalArgumentException If any of the values in the <var>valueArray</var> is not one
* of the values of <var>type</var>.
*/
public HDF5EnumerationValueArray(HDF5EnumerationType type, Enum<?>[] valueArray)
throws IllegalArgumentException
{
this(type, toString(valueArray));
}
private static String[] toString(Enum<?>[] valueArray)
{
final String[] result = new String[valueArray.length];
for (int i = 0; i < valueArray.length; ++i)
{
result[i] = valueArray[i].name();
}
return result;
}
/**
* Creates an enumeration value array.
*
* @param type The enumeration type of this value.
* @param valueArray The array of string values (each one needs to be one of the values of
* <var>type</var>).
* @throws IllegalArgumentException If any of the values in the <var>valueArray</var> is not one
* of the values of <var>type</var>.
*/
public HDF5EnumerationValueArray(HDF5EnumerationType type, String[] valueArray)
throws IllegalArgumentException
{
this.type = type;
this.length = valueArray.length;
map(valueArray);
}
private void map(String[] array) throws IllegalArgumentException
{
if (type.getEnumType().getValueArray().length < Byte.MAX_VALUE)
{
storageForm = EnumStorageForm.BYTE;
bArrayOrNull = new byte[array.length];
for (int i = 0; i < array.length; ++i)
{
final Integer indexOrNull = type.tryGetIndexForValue(array[i]);
if (indexOrNull == null)
{
throw new IllegalArgumentException("Value '" + array[i]
+ "' is not allowed for type '" + type.getName() + "'.");
}
bArrayOrNull[i] = indexOrNull.byteValue();
}
sArrayOrNull = null;
iArrayOrNull = null;
} else if (type.getEnumType().getValueArray().length < Short.MAX_VALUE)
{
storageForm = EnumStorageForm.SHORT;
bArrayOrNull = null;
sArrayOrNull = new short[array.length];
for (int i = 0; i < array.length; ++i)
{
final Integer indexOrNull = type.tryGetIndexForValue(array[i]);
if (indexOrNull == null)
{
throw new IllegalArgumentException("Value '" + array[i]
+ "' is not allowed for type '" + type.getName() + "'.");
}
sArrayOrNull[i] = indexOrNull.shortValue();
}
iArrayOrNull = null;
} else
{
storageForm = EnumStorageForm.INT;
bArrayOrNull = null;
sArrayOrNull = null;
iArrayOrNull = new int[array.length];
for (int i = 0; i < array.length; ++i)
{
final Integer indexOrNull = type.tryGetIndexForValue(array[i]);
if (indexOrNull == null)
{
throw new IllegalArgumentException("Value '" + array[i]
+ "' is not allowed for type '" + type.getName() + "'.");
}
iArrayOrNull[i] = indexOrNull.intValue();
}
}
}
private void setOrdinalArray(byte[] array)
{
if (type.getEnumType().getValueArray().length < Byte.MAX_VALUE)
{
storageForm = EnumStorageForm.BYTE;
bArrayOrNull = array;
checkOrdinalArray(bArrayOrNull);
sArrayOrNull = null;
iArrayOrNull = null;
} else if (type.getEnumType().getValueArray().length < Short.MAX_VALUE)
{
storageForm = EnumStorageForm.SHORT;
bArrayOrNull = null;
sArrayOrNull = toShortArray(array);
checkOrdinalArray(sArrayOrNull);
iArrayOrNull = null;
} else
{
storageForm = EnumStorageForm.INT;
bArrayOrNull = null;
sArrayOrNull = null;
iArrayOrNull = toIntArray(array);
checkOrdinalArray(iArrayOrNull);
}
}
private void setOrdinalArray(short[] array) throws IllegalArgumentException
{
if (type.getEnumType().getValueArray().length < Byte.MAX_VALUE)
{
storageForm = EnumStorageForm.BYTE;
bArrayOrNull = toByteArray(array);
checkOrdinalArray(bArrayOrNull);
sArrayOrNull = null;
iArrayOrNull = null;
} else if (type.getEnumType().getValueArray().length < Short.MAX_VALUE)
{
storageForm = EnumStorageForm.SHORT;
bArrayOrNull = null;
sArrayOrNull = array;
checkOrdinalArray(sArrayOrNull);
iArrayOrNull = null;
} else
{
storageForm = EnumStorageForm.INT;
bArrayOrNull = null;
sArrayOrNull = null;
iArrayOrNull = toIntArray(array);
checkOrdinalArray(iArrayOrNull);
}
}
private void setOrdinalArray(int[] array) throws IllegalArgumentException
{
if (type.getEnumType().getValueArray().length < Byte.MAX_VALUE)
{
storageForm = EnumStorageForm.BYTE;
bArrayOrNull = toByteArray(array);
checkOrdinalArray(bArrayOrNull);
sArrayOrNull = null;
iArrayOrNull = null;
} else if (type.getEnumType().getValueArray().length < Short.MAX_VALUE)
{
storageForm = EnumStorageForm.SHORT;
bArrayOrNull = null;
sArrayOrNull = toShortArray(array);
checkOrdinalArray(sArrayOrNull);
iArrayOrNull = null;
} else
{
storageForm = EnumStorageForm.INT;
bArrayOrNull = null;
sArrayOrNull = null;
iArrayOrNull = array;
checkOrdinalArray(iArrayOrNull);
}
}
private byte[] toByteArray(short[] array) throws IllegalArgumentException
{
final byte[] bArray = new byte[array.length];
for (int i = 0; i < array.length; ++i)
{
bArray[i] = (byte) array[i];
if (bArray[i] != array[i])
{
throw new IllegalArgumentException("Value " + array[i]
+ " cannot be stored in byte array");
}
}
return bArray;
}
private byte[] toByteArray(int[] array) throws IllegalArgumentException
{
final byte[] bArray = new byte[array.length];
for (int i = 0; i < array.length; ++i)
{
bArray[i] = (byte) array[i];
if (bArray[i] != array[i])
{
throw new IllegalArgumentException("Value " + array[i]
+ " cannot be stored in byte array");
}
}
return bArray;
}
private short[] toShortArray(byte[] array)
{
final short[] sArray = new short[array.length];
for (int i = 0; i < array.length; ++i)
{
sArray[i] = array[i];
}
return sArray;
}
private short[] toShortArray(int[] array) throws IllegalArgumentException
{
final short[] sArray = new short[array.length];
for (int i = 0; i < array.length; ++i)
{
sArray[i] = (short) array[i];
if (sArray[i] != array[i])
{
throw new IllegalArgumentException("Value " + array[i]
+ " cannot be stored in short array");
}
}
return sArray;
}
private int[] toIntArray(byte[] array)
{
final int[] iArray = new int[array.length];
for (int i = 0; i < array.length; ++i)
{
iArray[i] = array[i];
}
return iArray;
}
private int[] toIntArray(short[] array)
{
final int[] iArray = new int[array.length];
for (int i = 0; i < array.length; ++i)
{
iArray[i] = array[i];
}
return iArray;
}
private void checkOrdinalArray(byte[] array) throws IllegalArgumentException
{
for (int i = 0; i < array.length; ++i)
{
if (array[i] < 0 || array[i] >= type.getEnumType().getValueArray().length)
{
throw new IllegalArgumentException("valueIndex " + array[i]
+ " out of allowed range [0.." + (type.getEnumType().getValueArray().length - 1)
+ "] of type '" + type.getName() + "'.");
}
}
}
private void checkOrdinalArray(short[] array) throws IllegalArgumentException
{
for (int i = 0; i < array.length; ++i)
{
if (array[i] < 0 || array[i] >= type.getEnumType().getValueArray().length)
{
throw new IllegalArgumentException("valueIndex " + array[i]
+ " out of allowed range [0.." + (type.getEnumType().getValueArray().length - 1)
+ "] of type '" + type.getName() + "'.");
}
}
}
private void checkOrdinalArray(int[] array) throws IllegalArgumentException
{
for (int i = 0; i < array.length; ++i)
{
if (array[i] < 0 || array[i] >= type.getEnumType().getValueArray().length)
{
throw new IllegalArgumentException("valueIndex " + array[i]
+ " out of allowed range [0.." + (type.getEnumType().getValueArray().length - 1)
+ "] of type '" + type.getName() + "'.");
}
}
}
EnumStorageForm getStorageForm()
{
return storageForm;
}
byte[] getStorageFormBArray()
{
return bArrayOrNull;
}
short[] getStorageFormSArray()
{
return sArrayOrNull;
}
int[] getStorageFormIArray()
{
return iArrayOrNull;
}
/**
* Returns the <var>type</var> of this enumeration array.
*/
public HDF5EnumerationType getType()
{
return type;
}
/**
* Returns the number of members of this enumeration array.
*/
public int getLength()
{
return length;
}
/**
* Returns the ordinal value for the <var>arrayIndex</var>.
*
* @param arrayIndex The index in the array to get the ordinal for.
*/
public int getOrdinal(int arrayIndex)
{
if (bArrayOrNull != null)
{
return bArrayOrNull[arrayIndex];
} else if (sArrayOrNull != null)
{
return sArrayOrNull[arrayIndex];
} else
{
return iArrayOrNull[arrayIndex];
}
}
/**
* Returns the string value for <var>arrayIndex</var>.
*
* @param arrayIndex The index in the array to get the value for.
*/
public String getValue(int arrayIndex)
{
return type.getValues().get(getOrdinal(arrayIndex));
}
/**
* Returns the value as Enum of type <var>enumClass</var>.
*
* @param enumClass The class to return the value as.
* @param arrayIndex The index in the array to get the value for.
*/
public <T extends Enum<T>> T getValue(Class<T> enumClass, int arrayIndex)
{
return Enum.valueOf(enumClass, getValue(arrayIndex));
}
/**
* Returns the string values for all elements of this array.
*/
public String[] toStringArray()
{
final int len = getLength();
final String[] values = new String[len];
for (int i = 0; i < len; ++i)
{
values[i] = getValue(i);
}
return values;
}
/**
* Returns the values for all elements of this array as Enums of type <var>enumClass</var>.
*/
public <T extends Enum<T>> T[] toEnumArray(Class<T> enumClass)
{
final int len = getLength();
@SuppressWarnings("unchecked")
final T[] result = (T[]) Array.newInstance(enumClass, len);
for (int i = 0; i < len; ++i)
{
try
{
result[i] = Enum.valueOf(enumClass, getValue(i));
} catch (IllegalArgumentException ex)
{
throw new HDF5JavaException("The Java enum class " + enumClass.getCanonicalName()
+ " has no value '" + getValue(i) + "'.");
}
}
return result;
}
byte[] toStorageForm()
{
switch (getStorageForm())
{
case BYTE:
return getStorageFormBArray();
case SHORT:
return NativeData.shortToByte(getStorageFormSArray(), ByteOrder.NATIVE);
case INT:
return NativeData.intToByte(getStorageFormIArray(), ByteOrder.NATIVE);
}
throw new Error("Illegal storage form (" + getStorageForm() + ".)");
}
static HDF5EnumerationValueArray fromStorageForm(HDF5EnumerationType enumType, byte[] data,
int offset, int len)
{
switch (enumType.getStorageForm())
{
case BYTE:
final byte[] subArray = new byte[len];
System.arraycopy(data, offset, subArray, 0, len);
return new HDF5EnumerationValueArray(enumType, subArray);
case SHORT:
return new HDF5EnumerationValueArray(enumType, HDFNativeData.byteToShort(offset, len, data));
case INT:
return new HDF5EnumerationValueArray(enumType, HDFNativeData.byteToInt(offset, len, data));
}
throw new Error("Illegal storage form (" + enumType.getStorageForm() + ".)");
}
static String[] fromStorageFormToStringArray(HDF5EnumerationType enumType, byte[] data,
int offset, int len)
{
final String[] valueArray = new String[len];
for (int i = 0; i < len; ++i)
{
valueArray[i] = enumType.createStringFromStorageForm(data, offset + i);
}
return valueArray;
}
static int[] fromStorageFormToIntArray(HDF5EnumerationType enumType, byte[] data,
int offset, int len)
{
final int[] valueArray = new int[len];
for (int i = 0; i < len; ++i)
{
valueArray[i] = enumType.getOrdinalFromStorageForm(data, offset + i);
}
return valueArray;
}
//
// Iterable
//
@Override
public Iterator<String> iterator()
{
return new Iterator<String>()
{
private int index = 0;
@Override
public boolean hasNext()
{
return index < length;
}
@Override
public String next()
{
return getValue(index++);
}
@Override
public void remove() throws UnsupportedOperationException
{
throw new UnsupportedOperationException();
}
};
}
@Override
public String toString()
{
final StringBuilder b = new StringBuilder();
b.append(type.getName());
b.append(" [");
for (String value : this)
{
b.append(value);
b.append(",");
}
b.setLength(b.length() - 1);
b.append("]");
return b.toString();
}
}
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