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/*
* Copyright 2007 - 2018 ETH Zuerich, CISD and SIS.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package ch.systemsx.cisd.hdf5;
import static hdf.hdf5lib.HDF5Constants.H5T_INTEGER;
/**
* An object representing the storage features that are to be used for an integer data set.
* <p>
* The <code>..._KEEP</code> variants denote that the specified storage features should only be
* applied if a new data set has to be created. If the data set already exists, it will be kept with
* whatever storage features it has.
* <em>Note that this may lead to an exception if the existing data set is non-extendable and the
* dimensions of the new data set differ from the dimensions of the existing data set.</em>
* <p>
* The <code>..._DELETE</code> variants denote that the specified storage features should always be
* applied. If the data set already exists, it will be deleted before the new data set is written.
* This is the default behavior. However, if the
* {@link IHDF5WriterConfigurator#keepDataSetsIfTheyExist()} setting is given, the
* <code>..._DELETE</code> variant can be used to override this setting on a case-by-case basis.
* <p>
* The available storage layouts are {@link HDF5StorageLayout#COMPACT},
* {@link HDF5StorageLayout#CONTIGUOUS} or {@link HDF5StorageLayout#CHUNKED} can be chosen. Only
* {@link HDF5StorageLayout#CHUNKED} is extendable and can be compressed.
* <p>
* Two types of compressions are supported: <i>deflation</i> (the method used by <code>gzip</code>)
* and <i>scaling</i>, which can be used if the accuracy of the values are smaller than what the
* atomic data type can store. <b>Note that <i>scaling</i> can be a lossy compression</b> while
* <i>deflation</i> is always lossless. <i>Scaling</i> compression is only available with HDF5 1.8
* and newer. Trying to use <i>scaling</i> in strict HDF5 1.6 compatibility mode will throw an
* {@link IllegalStateException}.
* <p>
* For <i>deflation</i> the deflation level can be chosen to get the right balance between speed of
* compression and compression ratio. Often the {@link #DEFAULT_DEFLATION_LEVEL} will be the right
* choice.
* <p>
* For <i>scaling</i>, the scaling factor can be chosen that determines the accuracy of the values
* saved. For float values, the scaling factor determines the number of significant digits of the
* numbers. The algorithm used for scale compression is:
* <ol>
* <li>Calculate the minimum value of all values</li>
* <li>Subtract the minimum value from all values</li>
* <li>Store the number of bits specified as <code>scalingFactor</code></li>
* </ol>
* Note that this compression is lossless if
* <code>{@literal scalineFactor >= ceil(log2(max(values) - min(values) + 1)}</code>. This in made
* sure when using {@link #INT_AUTO_SCALING}, thus {@link #INT_AUTO_SCALING} is always losless.
* <p>
* <b>Contrary to float scaling compression, a lossy integer scaling compression is usually an error
* as the most significant bits are chopped of!</b> The option to specify the scaling factor is
* meant to give you a way to use that you <i>know</i> the span of the values
* <code>{@literal max(values) - min(values)}</code> rather than asking the library to waste time on
* computing it for you.
*
* @author Bernd Rinn
*/
public final class HDF5IntStorageFeatures extends HDF5AbstractStorageFeatures
{
/**
* Perform an automatic scaling on integer data.
*/
private final static byte INTEGER_AUTO_SCALING_FACTOR = 0;
/**
* Represents 'no compression', signed integers, use default storage layout.
*/
public static final HDF5IntStorageFeatures INT_NO_COMPRESSION = new HDF5IntStorageFeatures(
null, NO_DEFLATION_LEVEL, NO_SCALING_FACTOR, true);
/**
* Represents 'no compression', unsigned integers, use default storage layout.
*/
public static final HDF5IntStorageFeatures INT_NO_COMPRESSION_UNSIGNED =
new HDF5IntStorageFeatures(null, NO_DEFLATION_LEVEL, NO_SCALING_FACTOR, false);
/**
* Represents 'no compression', use default storage layout.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static final HDF5IntStorageFeatures INT_NO_COMPRESSION_KEEP =
new HDF5IntStorageFeatures(null, DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING,
NO_DEFLATION_LEVEL, NO_SCALING_FACTOR, true);
/**
* Represents 'no compression', unsigned integers, use default storage layout.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static final HDF5IntStorageFeatures INT_NO_COMPRESSION_UNSIGNED_KEEP =
new HDF5IntStorageFeatures(null, DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING,
NO_DEFLATION_LEVEL, NO_SCALING_FACTOR, false);
/**
* Represents 'no compression', use default storage layout.
* <p>
* Delete an existing data set before writing the new one. Always apply the chosen settings.
* This allows to overwrite the {@link IHDF5WriterConfigurator#keepDataSetsIfTheyExist()}
* setting.
*/
public static final HDF5IntStorageFeatures INT_NO_COMPRESSION_DELETE =
new HDF5IntStorageFeatures(null, DataSetReplacementPolicy.ENFORCE_REPLACE_WITH_NEW,
NO_DEFLATION_LEVEL, NO_SCALING_FACTOR, true);
/**
* Represents 'no compression', unsigned integers, use default storage layout.
* <p>
* Delete an existing data set before writing the new one. Always apply the chosen settings.
* This allows to overwrite the {@link IHDF5WriterConfigurator#keepDataSetsIfTheyExist()}
* setting.
*/
public static final HDF5IntStorageFeatures INT_NO_COMPRESSION_UNSIGNED_DELETE =
new HDF5IntStorageFeatures(null, DataSetReplacementPolicy.ENFORCE_REPLACE_WITH_NEW,
NO_DEFLATION_LEVEL, NO_SCALING_FACTOR, false);
/**
* Represents a compact storage layout.
*/
public static final HDF5IntStorageFeatures INT_COMPACT = new HDF5IntStorageFeatures(
HDF5StorageLayout.COMPACT, NO_DEFLATION_LEVEL, NO_SCALING_FACTOR, true);
/**
* Represents a compact storage layout with unsigned integers.
*/
public static final HDF5IntStorageFeatures INT_COMPACT_UNSIGNED = new HDF5IntStorageFeatures(
HDF5StorageLayout.COMPACT, NO_DEFLATION_LEVEL, NO_SCALING_FACTOR, false);
/**
* Represents a compact storage layout.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static final HDF5IntStorageFeatures INT_COMPACT_KEEP = new HDF5IntStorageFeatures(
HDF5StorageLayout.COMPACT, DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING,
NO_DEFLATION_LEVEL, NO_SCALING_FACTOR, true);
/**
* Represents a compact storage layout with unsigned integers.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static final HDF5IntStorageFeatures INT_COMPACT_UNSIGNED_KEEP =
new HDF5IntStorageFeatures(HDF5StorageLayout.COMPACT,
DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING, NO_DEFLATION_LEVEL,
NO_SCALING_FACTOR, false);
/**
* Represents a compact storage layout.
* <p>
* Delete an existing data set before writing the new one. Always apply the chosen settings.
* This allows to overwrite the {@link IHDF5WriterConfigurator#keepDataSetsIfTheyExist()}
* setting.
*/
public static final HDF5IntStorageFeatures INT_COMPACT_DELETE = new HDF5IntStorageFeatures(
HDF5StorageLayout.COMPACT, DataSetReplacementPolicy.ENFORCE_REPLACE_WITH_NEW,
NO_DEFLATION_LEVEL, NO_SCALING_FACTOR, true);
/**
* Represents a compact storage layout with unsigned integers.
* <p>
* Delete an existing data set before writing the new one. Always apply the chosen settings.
* This allows to overwrite the {@link IHDF5WriterConfigurator#keepDataSetsIfTheyExist()}
* setting.
*/
public static final HDF5IntStorageFeatures INT_COMPACT_UNSIGNED_DELETE =
new HDF5IntStorageFeatures(HDF5StorageLayout.COMPACT,
DataSetReplacementPolicy.ENFORCE_REPLACE_WITH_NEW, NO_DEFLATION_LEVEL,
NO_SCALING_FACTOR, false);
/**
* Represents a contiguous storage layout.
*/
public static final HDF5IntStorageFeatures INT_CONTIGUOUS = new HDF5IntStorageFeatures(
HDF5StorageLayout.CONTIGUOUS, NO_DEFLATION_LEVEL, NO_SCALING_FACTOR, true);
/**
* Represents a contiguous storage layout with unsigned integers.
*/
public static final HDF5IntStorageFeatures INT_CONTIGUOUS_UNSIGNED =
new HDF5IntStorageFeatures(HDF5StorageLayout.CONTIGUOUS, NO_DEFLATION_LEVEL,
NO_SCALING_FACTOR, false);
/**
* Represents a contiguous storage layout.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static final HDF5IntStorageFeatures INT_CONTIGUOUS_KEEP = new HDF5IntStorageFeatures(
HDF5StorageLayout.CONTIGUOUS, DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING,
NO_DEFLATION_LEVEL, NO_SCALING_FACTOR, true);
/**
* Represents a contiguous storage layout with unsigned integers.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static final HDF5IntStorageFeatures INT_CONTIGUOUS_UNSIGNED_KEEP =
new HDF5IntStorageFeatures(HDF5StorageLayout.CONTIGUOUS,
DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING, NO_DEFLATION_LEVEL,
NO_SCALING_FACTOR, false);
/**
* Represents a contiguous storage layout.
* <p>
* Delete an existing data set before writing the new one. Always apply the chosen settings.
* This allows to overwrite the {@link IHDF5WriterConfigurator#keepDataSetsIfTheyExist()}
* setting.
*/
public static final HDF5IntStorageFeatures INT_CONTIGUOUS_DELETE = new HDF5IntStorageFeatures(
HDF5StorageLayout.CONTIGUOUS, DataSetReplacementPolicy.ENFORCE_REPLACE_WITH_NEW,
NO_DEFLATION_LEVEL, NO_SCALING_FACTOR, true);
/**
* Represents a contiguous storage layout with unsigned integers.
* <p>
* Delete an existing data set before writing the new one. Always apply the chosen settings.
* This allows to overwrite the {@link IHDF5WriterConfigurator#keepDataSetsIfTheyExist()}
* setting.
*/
public static final HDF5IntStorageFeatures INT_CONTIGUOUS_UNSIGNED_DELETE =
new HDF5IntStorageFeatures(HDF5StorageLayout.CONTIGUOUS,
DataSetReplacementPolicy.ENFORCE_REPLACE_WITH_NEW, NO_DEFLATION_LEVEL,
NO_SCALING_FACTOR, false);
/**
* Represents a chunked (extendable) storage layout.
*/
public static final HDF5IntStorageFeatures INT_CHUNKED = new HDF5IntStorageFeatures(
HDF5StorageLayout.CHUNKED, NO_DEFLATION_LEVEL, NO_SCALING_FACTOR, true);
/**
* Represents a chunked (extendable) storage layout with unsigned integers.
*/
public static final HDF5IntStorageFeatures INT_CHUNKED_UNSIGNED = new HDF5IntStorageFeatures(
HDF5StorageLayout.CHUNKED, NO_DEFLATION_LEVEL, NO_SCALING_FACTOR, false);
/**
* Represents a chunked (extendable) storage layout.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static final HDF5IntStorageFeatures INT_CHUNKED_KEEP = new HDF5IntStorageFeatures(
HDF5StorageLayout.CHUNKED, DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING,
NO_DEFLATION_LEVEL, NO_SCALING_FACTOR, true);
/**
* Represents a chunked (extendable) storage layout with unsigned integers.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static final HDF5IntStorageFeatures INT_CHUNKED_UNSIGNED_KEEP =
new HDF5IntStorageFeatures(HDF5StorageLayout.CHUNKED,
DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING, NO_DEFLATION_LEVEL,
NO_SCALING_FACTOR, false);
/**
* Represents a chunked (extendable) storage layout.
* <p>
* Delete an existing data set before writing the new one. Always apply the chosen settings.
* This allows to overwrite the {@link IHDF5WriterConfigurator#keepDataSetsIfTheyExist()}
* setting.
*/
public static final HDF5IntStorageFeatures INT_CHUNKED_DELETE = new HDF5IntStorageFeatures(
HDF5StorageLayout.CHUNKED, DataSetReplacementPolicy.ENFORCE_REPLACE_WITH_NEW,
NO_DEFLATION_LEVEL, NO_SCALING_FACTOR, true);
/**
* Represents a chunked (extendable) storage layout with unsigned integers.
* <p>
* Delete an existing data set before writing the new one. Always apply the chosen settings.
* This allows to overwrite the {@link IHDF5WriterConfigurator#keepDataSetsIfTheyExist()}
* setting.
*/
public static final HDF5IntStorageFeatures INT_CHUNKED_UNSIGNED_DELETE =
new HDF5IntStorageFeatures(HDF5StorageLayout.CHUNKED,
DataSetReplacementPolicy.ENFORCE_REPLACE_WITH_NEW, NO_DEFLATION_LEVEL,
NO_SCALING_FACTOR, false);
/**
* Represents 'standard compression', that is deflation with the default deflation level.
*/
public static final HDF5IntStorageFeatures INT_DEFLATE = new HDF5IntStorageFeatures(null,
DEFAULT_DEFLATION_LEVEL, NO_SCALING_FACTOR, true);
/**
* Represents 'standard compression' with a pre-filter shuffle, that is deflation with the
* default deflation level.
*/
public static final HDF5IntStorageFeatures INT_SHUFFLE_DEFLATE = new HDF5IntStorageFeatures(
null, DataSetReplacementPolicy.USE_WRITER_DEFAULT, true, DEFAULT_DEFLATION_LEVEL,
NO_SCALING_FACTOR, true);
/**
* Represents 'standard compression' with unsigned integers, that is deflation with the default
* deflation level.
*/
public static final HDF5IntStorageFeatures INT_DEFLATE_UNSIGNED = new HDF5IntStorageFeatures(
null, DEFAULT_DEFLATION_LEVEL, NO_SCALING_FACTOR, false);
/**
* Represents 'standard compression', that is deflation with the default deflation level.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static final HDF5IntStorageFeatures INT_DEFLATE_KEEP = new HDF5IntStorageFeatures(null,
DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING, DEFAULT_DEFLATION_LEVEL,
NO_SCALING_FACTOR, true);
/**
* Represents 'standard compression' with unsigned integers, that is deflation with the default
* deflation level.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static final HDF5IntStorageFeatures INT_DEFLATE_UNSIGNED_KEEP =
new HDF5IntStorageFeatures(null, DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING,
DEFAULT_DEFLATION_LEVEL, NO_SCALING_FACTOR, false);
/**
* Represents 'standard compression', that is deflation with the default deflation level.
* <p>
* Delete an existing data set before writing the new one. Always apply the chosen settings.
* This allows to overwrite the {@link IHDF5WriterConfigurator#keepDataSetsIfTheyExist()}
* setting.
*/
public static final HDF5IntStorageFeatures INT_DEFLATE_DELETE = new HDF5IntStorageFeatures(
null, DataSetReplacementPolicy.ENFORCE_REPLACE_WITH_NEW, DEFAULT_DEFLATION_LEVEL,
NO_SCALING_FACTOR, true);
/**
* Represents 'standard compression' with unsigned integers, that is deflation with the default
* deflation level.
* <p>
* Delete an existing data set before writing the new one. Always apply the chosen settings.
* This allows to overwrite the {@link IHDF5WriterConfigurator#keepDataSetsIfTheyExist()}
* setting.
*/
public static final HDF5IntStorageFeatures INT_DEFLATE_UNSIGNED_DELETE =
new HDF5IntStorageFeatures(null, DataSetReplacementPolicy.ENFORCE_REPLACE_WITH_NEW,
DEFAULT_DEFLATION_LEVEL, NO_SCALING_FACTOR, false);
/**
* Represents 'maximal compression', that is deflation with the maximal deflation level.
*/
public static final HDF5IntStorageFeatures INT_DEFLATE_MAX = new HDF5IntStorageFeatures(null,
MAX_DEFLATION_LEVEL, NO_SCALING_FACTOR, true);
/**
* Represents 'maximal compression' with unsigned integers, that is deflation with the maximal
* deflation level.
*/
public static final HDF5IntStorageFeatures INT_DEFLATE_MAX_UNSIGNED =
new HDF5IntStorageFeatures(null, MAX_DEFLATION_LEVEL, NO_SCALING_FACTOR, false);
/**
* Represents 'maximal compression', that is deflation with the maximal deflation level.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static final HDF5IntStorageFeatures INT_DEFLATE_MAX_KEEP = new HDF5IntStorageFeatures(
null, DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING, MAX_DEFLATION_LEVEL,
NO_SCALING_FACTOR, true);
/**
* Represents 'maximal compression' with unsigned integers, that is deflation with the maximal
* deflation level.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static final HDF5IntStorageFeatures INT_DEFLATE_MAX_UNSIGNED_KEEP =
new HDF5IntStorageFeatures(null, DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING,
MAX_DEFLATION_LEVEL, NO_SCALING_FACTOR, false);
/**
* Represents 'maximal compression', that is deflation with the maximal deflation level.
* <p>
* Delete an existing data set before writing the new one. Always apply the chosen settings.
* This allows to overwrite the {@link IHDF5WriterConfigurator#keepDataSetsIfTheyExist()}
* setting.
*/
public static final HDF5IntStorageFeatures INT_DEFLATE_MAX_DELETE = new HDF5IntStorageFeatures(
null, DataSetReplacementPolicy.ENFORCE_REPLACE_WITH_NEW, MAX_DEFLATION_LEVEL,
NO_SCALING_FACTOR, true);
/**
* Represents 'maximal compression' with unsigned integers, that is deflation with the maximal
* deflation level.
* <p>
* Delete an existing data set before writing the new one. Always apply the chosen settings.
* This allows to overwrite the {@link IHDF5WriterConfigurator#keepDataSetsIfTheyExist()}
* setting.
*/
public static final HDF5IntStorageFeatures INT_DEFLATE_MAX_UNSIGNED_DELETE =
new HDF5IntStorageFeatures(null, DataSetReplacementPolicy.ENFORCE_REPLACE_WITH_NEW,
MAX_DEFLATION_LEVEL, NO_SCALING_FACTOR, false);
/**
* Represents automatic scaling for integer values.
*/
public static final HDF5IntStorageFeatures INT_AUTO_SCALING = new HDF5IntStorageFeatures(null,
NO_DEFLATION_LEVEL, INTEGER_AUTO_SCALING_FACTOR, true);
/**
* Represents automatic scaling for integer values with unsigned integers.
*/
public static final HDF5IntStorageFeatures INT_AUTO_SCALING_UNSIGNED =
new HDF5IntStorageFeatures(null, NO_DEFLATION_LEVEL, INTEGER_AUTO_SCALING_FACTOR, false);
/**
* Represents automatic scaling for integer values.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static final HDF5IntStorageFeatures INT_AUTO_SCALING_KEEP = new HDF5IntStorageFeatures(
null, DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING, NO_DEFLATION_LEVEL,
INTEGER_AUTO_SCALING_FACTOR, true);
/**
* Represents automatic scaling for integer values with unsigned integers.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static final HDF5IntStorageFeatures INT_AUTO_SCALING_UNSIGNED_KEEP =
new HDF5IntStorageFeatures(null, DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING,
NO_DEFLATION_LEVEL, INTEGER_AUTO_SCALING_FACTOR, false);
/**
* Represents automatic scaling for integer values.
* <p>
* Delete an existing data set before writing the new one. Always apply the chosen settings.
* This allows to overwrite the {@link IHDF5WriterConfigurator#keepDataSetsIfTheyExist()}
* setting.
*/
public static final HDF5IntStorageFeatures INT_AUTO_SCALING_DELETE =
new HDF5IntStorageFeatures(null, DataSetReplacementPolicy.ENFORCE_REPLACE_WITH_NEW,
NO_DEFLATION_LEVEL, INTEGER_AUTO_SCALING_FACTOR, true);
/**
* Represents automatic scaling for integer values with unsigned integers.
* <p>
* Delete an existing data set before writing the new one. Always apply the chosen settings.
* This allows to overwrite the {@link IHDF5WriterConfigurator#keepDataSetsIfTheyExist()}
* setting.
*/
public static final HDF5IntStorageFeatures INT_AUTO_SCALING_UNSIGNED_DELETE =
new HDF5IntStorageFeatures(null, DataSetReplacementPolicy.ENFORCE_REPLACE_WITH_NEW,
NO_DEFLATION_LEVEL, INTEGER_AUTO_SCALING_FACTOR, false);
/**
* Represents automatic scaling for integer values combined with deflation with the default
* deflation level.
*/
public static final HDF5IntStorageFeatures INT_AUTO_SCALING_DEFLATE =
new HDF5IntStorageFeatures(null, DEFAULT_DEFLATION_LEVEL, INTEGER_AUTO_SCALING_FACTOR,
true);
/**
* Represents automatic scaling for integer values combined with deflation with the default
* deflation level, using unsigned integers.
*/
public static final HDF5IntStorageFeatures INT_AUTO_SCALING_DEFLATE_UNSIGNED =
new HDF5IntStorageFeatures(null, DEFAULT_DEFLATION_LEVEL, INTEGER_AUTO_SCALING_FACTOR,
false);
/**
* Represents automatic scaling for integer values combined with deflation with the default
* deflation level.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static final HDF5IntStorageFeatures INT_AUTO_SCALING_DEFLATE_KEEP =
new HDF5IntStorageFeatures(null, DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING,
DEFAULT_DEFLATION_LEVEL, INTEGER_AUTO_SCALING_FACTOR, true);
/**
* Represents automatic scaling for integer values combined with deflation with the default
* deflation level, using unsigned integers.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static final HDF5IntStorageFeatures INT_AUTO_SCALING_DEFLATE_UNSIGNED_KEEP =
new HDF5IntStorageFeatures(null, DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING,
DEFAULT_DEFLATION_LEVEL, INTEGER_AUTO_SCALING_FACTOR, false);
/**
* Represents automatic scaling for integer values combined with deflation with the default
* deflation level.
* <p>
* Delete an existing data set before writing the new one. Always apply the chosen settings.
* This allows to overwrite the {@link IHDF5WriterConfigurator#keepDataSetsIfTheyExist()}
* setting.
*/
public static final HDF5IntStorageFeatures INT_AUTO_SCALING_DEFLATE_DELETE =
new HDF5IntStorageFeatures(null, DataSetReplacementPolicy.ENFORCE_REPLACE_WITH_NEW,
DEFAULT_DEFLATION_LEVEL, INTEGER_AUTO_SCALING_FACTOR, true);
/**
* Represents automatic scaling for integer values combined with deflation with the default
* deflation level, using unsigned integers.
* <p>
* Delete an existing data set before writing the new one. Always apply the chosen settings.
* This allows to overwrite the {@link IHDF5WriterConfigurator#keepDataSetsIfTheyExist()}
* setting.
*/
public static final HDF5IntStorageFeatures INT_AUTO_SCALING_DEFLATE_UNSIGNED_DELETE =
new HDF5IntStorageFeatures(null, DataSetReplacementPolicy.ENFORCE_REPLACE_WITH_NEW,
DEFAULT_DEFLATION_LEVEL, INTEGER_AUTO_SCALING_FACTOR, false);
/**
* A builder for storage features.
*/
public static final class HDF5IntStorageFeatureBuilder extends
HDF5AbstractStorageFeatureBuilder
{
private boolean signed = true;
public HDF5IntStorageFeatureBuilder()
{
}
public HDF5IntStorageFeatureBuilder(HDF5AbstractStorageFeatures template)
{
super(template);
if (template instanceof HDF5IntStorageFeatures)
{
signed(((HDF5IntStorageFeatures) template).isSigned());
}
}
boolean isSigned()
{
return signed;
}
/**
* Sets that the integer values should be stored as signed integers if
* <code>signed==true</code> and as unsigned integers if <code>signed==false</code>.
*/
public HDF5IntStorageFeatureBuilder signed(@SuppressWarnings("hiding")
boolean signed)
{
this.signed = signed;
return this;
}
/**
* Sets that the integer values should be stored as unsigned integers.
*/
public HDF5IntStorageFeatureBuilder unsigned()
{
this.signed = false;
return this;
}
/**
* Compresses the dataset with default deflation level, if <code>compress==true</code>, do
* not compress if <code>compress==false</code>.
*
* @return This builder.
*/
@Override
public HDF5IntStorageFeatureBuilder compress(boolean compress)
{
super.compress(compress);
return this;
}
/**
* Compress the dataset with default deflation level.
*
* @return This builder.
*/
@Override
public HDF5IntStorageFeatureBuilder compress()
{
super.compress();
return this;
}
/**
* Compresses this dataset with the given <var>deflateLevel</var>.
* {@link #NO_DEFLATION_LEVEL} means: do not compress. A good default value is
* {@link #DEFAULT_DEFLATION_LEVEL}, the maximum value supported is
* {@link #MAX_DEFLATION_LEVEL}.
*
* @return This builder.
*/
@Override
public HDF5IntStorageFeatureBuilder deflateLevel(byte deflateLevel)
{
super.deflateLevel(deflateLevel);
return this;
}
/**
* Sets the scaling factor for an integer scaling pre-filter.
*
* @return This builder.
*/
@Override
public HDF5IntStorageFeatureBuilder scalingFactor(byte scalingFactor)
{
super.scalingFactor(scalingFactor);
return this;
}
/**
* Disables the scaling pre-filter.
*
* @return This builder.
*/
@Override
public HDF5IntStorageFeatureBuilder noScaling()
{
super.noScaling();
return this;
}
/**
* Sets a shuffling pre-filter for deflation if <code>shuffleBeforeDeflate==true</code> and
* disables it if <code>shuffleBeforeDeflate==false</code>. Theshuffling pre-filter may
* improve the compression level but may also increase the compression time.
* <p>
* Only takes effect if compression is switched on.
*
* @return This builder.
*/
@Override
public HDF5IntStorageFeatureBuilder shuffleBeforeDeflate(boolean shuffleBeforeDeflate)
{
super.shuffleBeforeDeflate(shuffleBeforeDeflate);
return this;
}
/**
* Sets a shuffling pre-filter for deflation. This may improve the compression level but may
* also increase the compression time.
* <p>
* Only takes effect if compression is switched on.
*
* @see #compress()
* @see #deflateLevel(byte)
* @return This builder.
*/
@Override
public HDF5AbstractStorageFeatureBuilder shuffleBeforeDeflate()
{
super.shuffleBeforeDeflate();
return this;
}
/**
* Set the layout for the dataset.
*
* @return This builder.
*/
@Override
public HDF5IntStorageFeatureBuilder storageLayout(HDF5StorageLayout proposedLayout)
{
super.storageLayout(proposedLayout);
return this;
}
/**
* Set a compact layout for the dataset.
*
* @return This builder.
*/
@Override
public HDF5AbstractStorageFeatureBuilder compactStorageLayout()
{
super.compactStorageLayout();
return this;
}
/**
* Set a contiguous layout for the dataset.
*
* @return This builder.
*/
@Override
public HDF5AbstractStorageFeatureBuilder contiguousStorageLayout()
{
super.contiguousStorageLayout();
return this;
}
/**
* Set a chunked layout for the dataset.
*
* @return This builder.
*/
@Override
public HDF5AbstractStorageFeatureBuilder chunkedStorageLayout()
{
super.chunkedStorageLayout();
return this;
}
/**
* Let a heuristic choose the right layout for the dataset.
*
* @return This builder.
*/
@Override
public HDF5AbstractStorageFeatureBuilder defaultStorageLayout()
{
this.defaultStorageLayout();
return this;
}
/**
* Set the dataset replacement policy for existing datasets.
*
* @return This builder.
*/
@Override
public HDF5IntStorageFeatureBuilder datasetReplacementPolicy(
DataSetReplacementPolicy datasetReplacementPolicy)
{
super.datasetReplacementPolicy(datasetReplacementPolicy);
return this;
}
/**
* Set the dataset replacement policy for existing datasets to
* {@link ch.systemsx.cisd.hdf5.HDF5AbstractStorageFeatures.DataSetReplacementPolicy#USE_WRITER_DEFAULT}
* .
*
* @return This builder.
*/
@Override
public HDF5IntStorageFeatureBuilder datasetReplacementUseWriterDefault()
{
super.datasetReplacementUseWriterDefault();
return this;
}
/**
* Set the dataset replacement policy for existing datasets to
* {@link ch.systemsx.cisd.hdf5.HDF5AbstractStorageFeatures.DataSetReplacementPolicy#ENFORCE_KEEP_EXISTING}
* .
*
* @return This builder.
*/
@Override
public HDF5IntStorageFeatureBuilder datasetReplacementEnforceKeepExisting()
{
super.datasetReplacementEnforceKeepExisting();
return this;
}
/**
* Set the dataset replacement policy for existing datasets to
* {@link ch.systemsx.cisd.hdf5.HDF5AbstractStorageFeatures.DataSetReplacementPolicy#ENFORCE_REPLACE_WITH_NEW}
* .
*
* @return This builder.
*/
@Override
public HDF5IntStorageFeatureBuilder datasetReplacementEnforceReplaceWithNew()
{
super.datasetReplacementEnforceReplaceWithNew();
return this;
}
/**
* Returns the storage features corresponding to this builder's values.
*/
@Override
public HDF5IntStorageFeatures features()
{
return new HDF5IntStorageFeatures(this);
}
}
/**
* Returns a new storage feature builder.
*/
public static HDF5IntStorageFeatureBuilder build()
{
return new HDF5IntStorageFeatureBuilder();
}
/**
* Returns a new storage feature builder, initializing from <var>template</var>.
*/
public static HDF5IntStorageFeatureBuilder build(HDF5AbstractStorageFeatures template)
{
return new HDF5IntStorageFeatureBuilder(template);
}
/**
* Create a corresponding {@link HDF5IntStorageFeatures} for the given
* {@link HDF5GenericStorageFeatures}.
*/
public static HDF5IntStorageFeatures createFromGeneric(
HDF5GenericStorageFeatures storageFeatures)
{
if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_CHUNKED)
{
return HDF5IntStorageFeatures.INT_CHUNKED;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_CHUNKED_DELETE)
{
return HDF5IntStorageFeatures.INT_CHUNKED_DELETE;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_CHUNKED_KEEP)
{
return HDF5IntStorageFeatures.INT_CHUNKED_KEEP;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_COMPACT)
{
return HDF5IntStorageFeatures.INT_COMPACT;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_COMPACT_DELETE)
{
return HDF5IntStorageFeatures.INT_COMPACT_DELETE;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_COMPACT_KEEP)
{
return HDF5IntStorageFeatures.INT_COMPACT_KEEP;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_CONTIGUOUS)
{
return HDF5IntStorageFeatures.INT_CONTIGUOUS;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_CONTIGUOUS_DELETE)
{
return HDF5IntStorageFeatures.INT_CONTIGUOUS_DELETE;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_CONTIGUOUS_KEEP)
{
return HDF5IntStorageFeatures.INT_CONTIGUOUS_KEEP;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_NO_COMPRESSION)
{
return HDF5IntStorageFeatures.INT_NO_COMPRESSION;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_NO_COMPRESSION_DELETE)
{
return HDF5IntStorageFeatures.INT_NO_COMPRESSION_DELETE;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_NO_COMPRESSION_KEEP)
{
return HDF5IntStorageFeatures.INT_NO_COMPRESSION_KEEP;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_DEFLATE)
{
return HDF5IntStorageFeatures.INT_DEFLATE;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_DEFLATE_DELETE)
{
return HDF5IntStorageFeatures.INT_DEFLATE_DELETE;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_DEFLATE_KEEP)
{
return HDF5IntStorageFeatures.INT_DEFLATE_KEEP;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_DEFLATE_MAX)
{
return HDF5IntStorageFeatures.INT_DEFLATE_MAX;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_DEFLATE_MAX_DELETE)
{
return HDF5IntStorageFeatures.INT_DEFLATE_MAX_DELETE;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_DEFLATE_MAX_KEEP)
{
return HDF5IntStorageFeatures.INT_DEFLATE_MAX_KEEP;
} else
{
return new HDF5IntStorageFeatures(storageFeatures.tryGetProposedLayout(),
storageFeatures.getDatasetReplacementPolicy(),
storageFeatures.getDeflateLevel(), NO_SCALING_FACTOR, true);
}
}
/**
* Create a corresponding {@link HDF5IntStorageFeatures} for the given
* {@link HDF5GenericStorageFeatures}.
*/
public static HDF5IntStorageFeatures createUnsignedFromGeneric(
HDF5GenericStorageFeatures storageFeatures)
{
if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_CHUNKED)
{
return HDF5IntStorageFeatures.INT_CHUNKED_UNSIGNED;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_CHUNKED_DELETE)
{
return HDF5IntStorageFeatures.INT_CHUNKED_UNSIGNED_DELETE;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_CHUNKED_KEEP)
{
return HDF5IntStorageFeatures.INT_CHUNKED_UNSIGNED_KEEP;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_COMPACT)
{
return HDF5IntStorageFeatures.INT_COMPACT_UNSIGNED;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_COMPACT_DELETE)
{
return HDF5IntStorageFeatures.INT_COMPACT_UNSIGNED_DELETE;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_COMPACT_KEEP)
{
return HDF5IntStorageFeatures.INT_COMPACT_UNSIGNED_KEEP;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_CONTIGUOUS)
{
return HDF5IntStorageFeatures.INT_CONTIGUOUS_UNSIGNED;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_CONTIGUOUS_DELETE)
{
return HDF5IntStorageFeatures.INT_CONTIGUOUS_UNSIGNED_DELETE;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_CONTIGUOUS_KEEP)
{
return HDF5IntStorageFeatures.INT_CONTIGUOUS_UNSIGNED_KEEP;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_NO_COMPRESSION)
{
return HDF5IntStorageFeatures.INT_NO_COMPRESSION_UNSIGNED;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_NO_COMPRESSION_DELETE)
{
return HDF5IntStorageFeatures.INT_NO_COMPRESSION_UNSIGNED_DELETE;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_NO_COMPRESSION_KEEP)
{
return HDF5IntStorageFeatures.INT_NO_COMPRESSION_UNSIGNED_KEEP;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_DEFLATE)
{
return HDF5IntStorageFeatures.INT_DEFLATE_UNSIGNED;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_DEFLATE_DELETE)
{
return HDF5IntStorageFeatures.INT_DEFLATE_UNSIGNED_DELETE;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_DEFLATE_KEEP)
{
return HDF5IntStorageFeatures.INT_DEFLATE_UNSIGNED_KEEP;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_DEFLATE_MAX)
{
return HDF5IntStorageFeatures.INT_DEFLATE_MAX_UNSIGNED;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_DEFLATE_MAX_DELETE)
{
return HDF5IntStorageFeatures.INT_DEFLATE_MAX_UNSIGNED_DELETE;
} else if (storageFeatures == HDF5GenericStorageFeatures.GENERIC_DEFLATE_MAX_KEEP)
{
return HDF5IntStorageFeatures.INT_DEFLATE_MAX_UNSIGNED_KEEP;
} else
{
return new HDF5IntStorageFeatures(storageFeatures.tryGetProposedLayout(),
storageFeatures.getDatasetReplacementPolicy(),
storageFeatures.getDeflateLevel(), NO_SCALING_FACTOR, true);
}
}
/**
* Creates a {@link HDF5IntStorageFeatures} object that represents deflation with the given
* <var>deflationLevel</var>.
*/
public static HDF5IntStorageFeatures createDeflation(int deflationLevel)
{
return createDeflation(deflationLevel, false, false, true);
}
/**
* Creates a {@link HDF5IntStorageFeatures} object that represents deflation with the given
* <var>deflationLevel</var>.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static HDF5IntStorageFeatures createDeflationKeep(int deflationLevel)
{
return createDeflation(deflationLevel, true, false, true);
}
/**
* Creates a {@link HDF5IntStorageFeatures} object that represents deflation with the given
* <var>deflationLevel</var>.
* <p>
* Delete an existing data set before writing the new one. Always apply the chosen settings.
* This allows to overwrite the {@link IHDF5WriterConfigurator#keepDataSetsIfTheyExist()}
* setting.
*/
public static HDF5IntStorageFeatures createDeflationDelete(int deflationLevel)
{
return createDeflation(deflationLevel, false, true, true);
}
/**
* Creates a {@link HDF5IntStorageFeatures} object that represents deflation with the given
* <var>deflationLevel</var>.
*/
public static HDF5IntStorageFeatures createDeflationUnsigned(int deflationLevel)
{
return createDeflation(deflationLevel, false, false, false);
}
/**
* Creates a {@link HDF5IntStorageFeatures} object that represents deflation with the given
* <var>deflationLevel</var> for unsigned integers.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static HDF5IntStorageFeatures createDeflationUnsignedKeep(int deflationLevel)
{
return createDeflation(deflationLevel, true, false, false);
}
/**
* Creates a {@link HDF5IntStorageFeatures} object that represents deflation with the given
* <var>deflationLevel</var> for unsigned integers.
* <p>
* Delete an existing data set before writing the new one. Always apply the chosen settings.
* This allows to overwrite the {@link IHDF5WriterConfigurator#keepDataSetsIfTheyExist()}
* setting.
*/
public static HDF5IntStorageFeatures createDeflationUnsignedDelete(int deflationLevel)
{
return createDeflation(deflationLevel, false, true, false);
}
/**
* Creates a {@link HDF5IntStorageFeatures} object that represents deflation with the given
* <var>deflationLevel</var> for unsigned integers.
*/
private static HDF5IntStorageFeatures createDeflation(int deflationLevel,
boolean keepDataSetIfExists, boolean deleteDataSetIfExists, boolean signed)
{
if (signed)
{
return new HDF5IntStorageFeatures(null, getDataSetReplacementPolicy(
keepDataSetIfExists, deleteDataSetIfExists), toByte(deflationLevel),
NO_SCALING_FACTOR, true);
} else
{
return new HDF5IntStorageFeatures(null, getDataSetReplacementPolicy(
keepDataSetIfExists, deleteDataSetIfExists), toByte(deflationLevel),
NO_SCALING_FACTOR, false);
}
}
/**
* Creates a {@link HDF5IntStorageFeatures} object that represents integer scaling with the
* given <var>scalingFactor</var>.
*/
public static HDF5IntStorageFeatures createIntegerScaling(int scalingFactor)
{
return createIntegerScaling(scalingFactor, false, true);
}
/**
* Creates a {@link HDF5IntStorageFeatures} object that represents integer scaling with the
* given <var>scalingFactor</var>.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static HDF5IntStorageFeatures createIntegerScalingKeep(int scalingFactor)
{
return createIntegerScaling(scalingFactor, true, true);
}
/**
* Creates a {@link HDF5IntStorageFeatures} object that represents integer scaling with the
* given <var>scalingFactor</var>.
*/
public static HDF5IntStorageFeatures createIntegerScalingUnsigned(int scalingFactor)
{
return createIntegerScaling(scalingFactor, false, false);
}
/**
* Creates a {@link HDF5IntStorageFeatures} object that represents integer scaling with the
* given <var>scalingFactor</var>.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static HDF5IntStorageFeatures createIntegerScalingUnsignedKeep(int scalingFactor)
{
return createIntegerScaling(scalingFactor, true, false);
}
/**
* Creates a {@link HDF5IntStorageFeatures} object that represents integer scaling with the
* given <var>scalingFactor</var>.
*/
private static HDF5IntStorageFeatures createIntegerScaling(int scalingFactor,
boolean keepExistingDataSetIfExists, boolean signed)
{
if (signed)
{
if (scalingFactor == INTEGER_AUTO_SCALING_FACTOR)
{
return keepExistingDataSetIfExists ? INT_AUTO_SCALING_DEFLATE_KEEP
: INT_AUTO_SCALING_DEFLATE;
} else
{
return new HDF5IntStorageFeatures(null, NO_DEFLATION_LEVEL, toByte(scalingFactor),
true);
}
} else
{
if (scalingFactor == INTEGER_AUTO_SCALING_FACTOR)
{
return keepExistingDataSetIfExists ? INT_AUTO_SCALING_DEFLATE_UNSIGNED_KEEP
: INT_AUTO_SCALING_DEFLATE_UNSIGNED;
} else
{
return new HDF5IntStorageFeatures(null, NO_DEFLATION_LEVEL, toByte(scalingFactor),
false);
}
}
}
/**
* Creates a {@link HDF5IntStorageFeatures} object that represents deflation with the default
* deflation level and integer scaling with the given <var>scalingFactor</var>.
*/
public static HDF5IntStorageFeatures createDeflateAndIntegerScaling(int scalingFactor)
{
return new HDF5IntStorageFeatures(null, DEFAULT_DEFLATION_LEVEL, toByte(scalingFactor),
true);
}
/**
* Creates a {@link HDF5IntStorageFeatures} object that represents deflation with the default
* deflation level and integer scaling with the given <var>scalingFactor</var>.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static HDF5IntStorageFeatures createDeflateAndIntegerScalingKeep(int scalingFactor)
{
return new HDF5IntStorageFeatures(null, DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING,
DEFAULT_DEFLATION_LEVEL, toByte(scalingFactor), true);
}
/**
* Creates a {@link HDF5IntStorageFeatures} object that represents deflation with the given
* <var>deflateLevel</var> and integer scaling with the given <var>scalingFactor</var>.
*/
public static HDF5IntStorageFeatures createDeflateAndIntegerScaling(int deflateLevel,
byte scalingFactor)
{
return new HDF5IntStorageFeatures(null, toByte(deflateLevel), scalingFactor, true);
}
/**
* Creates a {@link HDF5IntStorageFeatures} object that represents deflation with the given
* <var>deflateLevel</var> and integer scaling with the given <var>scalingFactor</var>.
*/
public static HDF5IntStorageFeatures createDeflateAndIntegerScalingUnsigned(int deflateLevel,
byte scalingFactor)
{
return new HDF5IntStorageFeatures(null, toByte(deflateLevel), scalingFactor, false);
}
/**
* Creates a {@link HDF5IntStorageFeatures} object that represents deflation with the given
* <var>deflateLevel</var> and integer scaling with the given <var>scalingFactor</var>.
*/
public static HDF5IntStorageFeatures createDeflateAndIntegerScaling(int deflateLevel,
byte scalingFactor, boolean keepDataSetIfExists)
{
return new HDF5IntStorageFeatures(null, getDataSetReplacementPolicy(keepDataSetIfExists,
false), toByte(deflateLevel), scalingFactor, true);
}
/**
* Creates a {@link HDF5IntStorageFeatures} object that represents deflation with the given
* <var>deflateLevel</var> and integer scaling with the given <var>scalingFactor</var>.
*/
public static HDF5IntStorageFeatures createDeflateAndIntegerScalingUnsigned(int deflateLevel,
byte scalingFactor, boolean keepDataSetIfExists)
{
return new HDF5IntStorageFeatures(null, getDataSetReplacementPolicy(keepDataSetIfExists,
false), toByte(deflateLevel), scalingFactor, false);
}
/**
* Creates a {@link HDF5IntStorageFeatures} object that represents deflation with the given
* <var>deflateLevel</var> and integer scaling with the given <var>scalingFactor</var>.
* <p>
* Keep existing data set and apply only if a new data set has to be created.
*/
public static HDF5IntStorageFeatures createDeflateAndIntegerScalingKeep(int deflateLevel,
byte scalingFactor)
{
return new HDF5IntStorageFeatures(null, DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING,
toByte(deflateLevel), scalingFactor, true);
}
private final boolean signed;
HDF5IntStorageFeatures(HDF5IntStorageFeatureBuilder builder)
{
super(builder.getStorageLayout(), builder.getDatasetReplacementPolicy(), builder
.isShuffleBeforeDeflate(), builder.getDeflateLevel(), builder.getScalingFactor());
this.signed = builder.isSigned();
}
HDF5IntStorageFeatures(HDF5StorageLayout proposedLayoutOrNull, byte deflateLevel,
byte scalingFactor, boolean signed)
{
this(proposedLayoutOrNull, DataSetReplacementPolicy.USE_WRITER_DEFAULT, deflateLevel,
scalingFactor, signed);
}
HDF5IntStorageFeatures(HDF5StorageLayout proposedLayoutOrNull,
DataSetReplacementPolicy dataSetReplacementPolicy, byte deflateLevel,
byte scalingFactor, boolean signed)
{
super(proposedLayoutOrNull, dataSetReplacementPolicy, deflateLevel, scalingFactor);
this.signed = signed;
}
HDF5IntStorageFeatures(HDF5StorageLayout proposedLayoutOrNull,
DataSetReplacementPolicy dataSetReplacementPolicy, boolean shuffleBeforeDeflate,
byte deflateLevel, byte scalingFactor, boolean signed)
{
super(proposedLayoutOrNull, dataSetReplacementPolicy, shuffleBeforeDeflate, deflateLevel,
scalingFactor);
this.signed = signed;
}
/**
* Returns <code>true</code> if signed integers should be stored, <code>false</code> otherwise.
*/
public boolean isSigned()
{
return signed;
}
/**
* Returns true, if this compression setting can be applied on the given <var>dataClassId</var>.
*/
@Override
boolean isCompatibleWithDataClass(int dataClassId)
{
return (dataClassId == H5T_INTEGER);
}
}
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