File: IHDF5DateTimeWriter.java

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/*
 * Copyright 2007 - 2018 ETH Zuerich, CISD and SIS.
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *      http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

package ch.systemsx.cisd.hdf5;

import java.util.Date;

import ch.systemsx.cisd.base.mdarray.MDArray;
import ch.systemsx.cisd.base.mdarray.MDLongArray;

/**
 * An interface that provides methods for writing time and date values from HDF5 files.
 * <p>
 * Obtain an object implementing this interface by calling {@link IHDF5Writer#time()}.
 * 
 * @author Bernd Rinn
 */
public interface IHDF5DateTimeWriter extends IHDF5DateTimeReader
{

    // /////////////////////
    // Attributes
    // /////////////////////

    /**
     * Set a date value as attribute on the referenced object.
     * <p>
     * The referenced object must exist, that is it need to have been written before by one of the
     * <code>write()</code> methods.
     * 
     * @param objectPath The name of the object to add the attribute to.
     * @param attributeName The name of the attribute.
     * @param date The value of the attribute.
     */
    public void setAttr(String objectPath, String attributeName,
            Date date);

    /**
     * Set a date array value as attribute on the referenced object.
     * <p>
     * The referenced object must exist, that is it need to have been written before by one of the
     * <code>write()</code> methods.
     * 
     * @param objectPath The name of the object to add the attribute to.
     * @param attributeName The name of the attribute.
     * @param dates The value of the attribute.
     */
    public void setArrayAttr(String objectPath, String attributeName,
            Date[] dates);

    /**
     * Set a time stamp value as attribute on the referenced object.
     * <p>
     * The referenced object must exist, that is it need to have been written before by one of the
     * <code>write()</code> methods.
     * 
     * @param objectPath The name of the object to add the attribute to.
     * @param attributeName The name of the attribute.
     * @param timeStamp The value of the attribute.
     */
    public void setAttr(String objectPath, String attributeName,
            long timeStamp);

    /**
     * Set a time stamp array value as attribute on the referenced object.
     * <p>
     * The referenced object must exist, that is it need to have been written before by one of the
     * <code>write()</code> methods.
     * 
     * @param objectPath The name of the object to add the attribute to.
     * @param attributeName The name of the attribute.
     * @param timeStamps The value of the attribute.
     */
    public void setArrayAttr(String objectPath, String attributeName,
            long[] timeStamps);

    /**
     * Sets a multi-dimensional timestamp array attribute on the referenced object.
     * <p>
     * The referenced object must exist, that is it need to have been written before by one of the
     * <code>write()</code> methods.
     * 
     * @param objectPath The name of the object to add the attribute to.
     * @param name The name of the attribute.
     * @param value The value of the attribute.
     */
    public void setMDArrayAttr(String objectPath, String name,
            MDLongArray value);

    /**
     * Sets a multi-dimensional timestamp array attribute on the referenced object.
     * <p>
     * The referenced object must exist, that is it need to have been written before by one of the
     * <code>write()</code> methods.
     * 
     * @param objectPath The name of the object to add the attribute to.
     * @param name The name of the attribute.
     * @param value The value of the attribute.
     */
    public void setMDArrayAttr(String objectPath, String name,
            MDArray<Date> value);

    // /////////////////////
    // Data Sets
    // /////////////////////

    /**
     * Writes out a time stamp value. The data set will be tagged as type variant
     * {@link HDF5DataTypeVariant#TIMESTAMP_MILLISECONDS_SINCE_START_OF_THE_EPOCH}.
     * <p>
     * <em>Note: Time stamps are stored as <code>long</code> values.</em>
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param timeStamp The timestamp to write as number of milliseconds since January 1, 1970,
     *            00:00:00 GMT.
     */
    public void write(String objectPath, long timeStamp);

    /**
     * Creates a time stamp array (of rank 1).
     * <p>
     * <em>Note: Time stamps are stored as <code>long</code> values.</em>
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param size The length of the data set to create.
     * @param blockSize The size of one block (for block-wise IO). Ignored if no extendable data
     *            sets are used (see {@link IHDF5WriterConfigurator#dontUseExtendableDataTypes()})
     *            and <code>deflate == false</code>.
     */
    public void createArray(String objectPath, long size, int blockSize);

    /**
     * Creates a time stamp array (of rank 1).
     * <p>
     * <em>Note: Time stamps are stored as <code>long</code> values.</em>
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param size The size of the byte array to create. This will be the total size for
     *            non-extendable data sets and the size of one chunk for extendable (chunked) data
     *            sets. For extendable data sets the initial size of the array will be 0, see
     *            {@link ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator#dontUseExtendableDataTypes}.
     */
    public void createArray(String objectPath, int size);

    /**
     * Creates a time stamp array (of rank 1).
     * <p>
     * <em>Note: Time stamps are stored as <code>long</code> values.</em>
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param size The length of the data set to create.
     * @param blockSize The size of one block (for block-wise IO). Ignored if no extendable data
     *            sets are used (see {@link IHDF5WriterConfigurator#dontUseExtendableDataTypes()})
     *            and <code>deflate == false</code>.
     * @param features The storage features of the data set.
     */
    public void createArray(String objectPath, long size, int blockSize,
            HDF5GenericStorageFeatures features);

    /**
     * Creates a time stamp array (of rank 1).
     * <p>
     * <em>Note: Time stamps are stored as <code>long</code> values.</em>
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param size The size of the array to create. This will be the total size for non-extendable
     *            data sets and the size of one chunk for extendable (chunked) data sets. For
     *            extendable data sets the initial size of the array will be 0, see
     *            {@link HDF5GenericStorageFeatures}.
     * @param features The storage features of the data set.
     */
    public void createArray(String objectPath, int size,
            HDF5GenericStorageFeatures features);

    /**
     * Writes out a time stamp array (of rank 1). The data set will be tagged as type variant
     * {@link HDF5DataTypeVariant#TIMESTAMP_MILLISECONDS_SINCE_START_OF_THE_EPOCH}.
     * <p>
     * <em>Note: Time stamps are stored as <code>long</code> values.</em>
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param timeStamps The timestamps to write as number of milliseconds since January 1, 1970,
     *            00:00:00 GMT.
     */
    public void writeArray(String objectPath, long[] timeStamps);

    /**
     * Writes out a time stamp array (of rank 1). The data set will be tagged as type variant
     * {@link HDF5DataTypeVariant#TIMESTAMP_MILLISECONDS_SINCE_START_OF_THE_EPOCH}.
     * <p>
     * <em>Note: Time stamps are stored as <code>long</code> values.</em>
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param timeStamps The timestamps to write as number of milliseconds since January 1, 1970,
     *            00:00:00 GMT.
     * @param features The storage features of the data set.
     */
    public void writeArray(String objectPath, long[] timeStamps,
            HDF5GenericStorageFeatures features);

    /**
     * Writes out a block of a time stamp array (which is stored as a <code>long</code> array of
     * rank 1). The data set needs to have been created by
     * {@link #createArray(String, long, int, HDF5GenericStorageFeatures)} beforehand.
     * <p>
     * <i>Note:</i> For best performance, the block size in this method should be chosen to be equal
     * to the <var>blockSize</var> argument of the
     * {@link IHDF5LongWriter#createArray(String, long, int, HDF5IntStorageFeatures)} call that
     * was used to create the data set.
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param data The data to write. The length defines the block size. Must not be
     *            <code>null</code> or of length 0.
     * @param blockNumber The number of the block to write.
     */
    public void writeArrayBlock(String objectPath, long[] data,
            long blockNumber);

    /**
     * Writes out a block of a time stamp array (which is stored as a <code>long</code> array of
     * rank 1). The data set needs to have been created by
     * {@link #createArray(String, long, int, HDF5GenericStorageFeatures)} beforehand.
     * <p>
     * Use this method instead of {@link #writeArrayBlock(String, long[], long)} if the
     * total size of the data set is not a multiple of the block size.
     * <p>
     * <i>Note:</i> For best performance, the typical <var>dataSize</var> in this method should be
     * chosen to be equal to the <var>blockSize</var> argument of the
     * {@link IHDF5LongWriter#createArray(String, long, int, HDF5IntStorageFeatures)} call that
     * was used to create the data set.
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param data The data to write. The length defines the block size. Must not be
     *            <code>null</code> or of length 0.
     * @param dataSize The (real) size of <code>data</code> (needs to be <code><= data.length</code>
     *            )
     * @param offset The offset in the data set to start writing to.
     */
    public void writeArrayBlockWithOffset(String objectPath, long[] data,
            int dataSize, long offset);

    /**
     * Writes out a time stamp value provided as a {@link Date}.
     * <p>
     * <em>Note: The time stamp is stored as <code>long</code> array and tagged as the according
     * type variant.</em>
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param date The date to write.
     * @see #write(String, long)
     */
    public void write(String objectPath, Date date);

    /**
     * Writes out a {@link Date} array (of rank 1).
     * <p>
     * <em>Note: Time stamps are stored as <code>long[]</code> arrays and tagged as the according
     * type variant.</em>
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param dates The dates to write.
     * @see #writeArray(String, long[])
     */
    public void writeArray(String objectPath, Date[] dates);

    /**
     * Writes out a {@link Date} array (of rank 1).
     * <p>
     * <em>Note: Time date is stored as <code>long[]</code> arrays and tagged as the according
     * type variant.</em>
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param dates The dates to write.
     * @param features The storage features of the data set.
     * @see #writeArray(String, long[], HDF5GenericStorageFeatures)
     */
    public void writeArray(String objectPath, Date[] dates,
            HDF5GenericStorageFeatures features);

    /**
     * Writes out a multi-dimensional array of time stamps.
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param data The data to write. Must not be <code>null</code>. All columns need to have the
     *            same length.
     * @param features The storage features of the data set.
     */
    public void writeMDArray(String objectPath, MDLongArray data,
            HDF5IntStorageFeatures features);
    
    /**
     * Creates a multi-dimensional array of time stamps / dates.
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param dimensions When the writer is configured to use extendable data types (see
     *            {@link IHDF5WriterConfigurator#dontUseExtendableDataTypes()}), the initial dimensions
     *            and the dimensions of a chunk of the array will be <var>dimensions</var>. When the 
     *            writer is configured to <i>enforce</i> a on-extendable data set, the initial dimensions 
     *            equal the dimensions and will be <var>dimensions</var>.
     */
    public void createMDArray(String objectPath, int[] dimensions);
    
    /**
     * Creates a multi-dimensional array of time stamps / dates.
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param dimensions The dimensions of the array.
     * @param blockDimensions The dimensions of one block (chunk) of the array.
     */
    public void createMDArray(String objectPath, long[] dimensions,
            int[] blockDimensions);

    /**
     * Creates a multi-dimensional array of time stamps / dates.
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param dimensions The dimensions of the <code>long</code> array to create. When <i>requesting</i> 
     *            a chunked data set (e.g. {@link HDF5IntStorageFeatures#INT_CHUNKED}), 
     *            the initial size of the array will be 0 and the chunk size will be <var>dimensions</var>. 
     *            When <i>allowing</i> a chunked data set (e.g. 
     *            {@link HDF5IntStorageFeatures#INT_NO_COMPRESSION} when the writer is 
     *            not configured to avoid extendable data types, see
     *            {@link IHDF5WriterConfigurator#dontUseExtendableDataTypes()}), the initial size
     *            and the chunk size of the array will be <var>dimensions</var>. When <i>enforcing</i> a 
     *            on-extendable data set (e.g. 
     *            {@link HDF5IntStorageFeatures#INT_CONTIGUOUS}), the initial size equals 
     *            the total size and will be <var>dimensions</var>.
     * @param features The storage features of the data set.
     */
    public void createMDArray(String objectPath, int[] dimensions,
            HDF5IntStorageFeatures features);
    
    /**
     * Creates a multi-dimensional array of time stamps / dates.
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param dimensions The dimensions of the array.
     * @param blockDimensions The dimensions of one block (chunk) of the array.
     * @param features The storage features of the data set.
     */
    public void createMDArray(String objectPath, long[] dimensions,
            int[] blockDimensions, HDF5IntStorageFeatures features);
    
    /**
     * Writes out a block of a multi-dimensional array of time stamps.
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param data The data to write. Must not be <code>null</code>. All columns need to have the
     *            same length.
     * @param blockNumber The block number in each dimension (offset: multiply with the extend in
     *            the according dimension).
     */
    public void writeMDArrayBlock(String objectPath, MDLongArray data,
            long[] blockNumber);
    
    /**
     * Writes out a block of a multi-dimensional array of time stamps.
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param data The data to write. Must not be <code>null</code>. All columns need to have the
     *            same length.
     * @param offset The offset in the data set  to start writing to in each dimension.
     */
    public void writeMDArrayBlockWithOffset(String objectPath, MDLongArray data,
            long[] offset);
    
    /**
     * Writes out a block of a multi-dimensional array of time stamps.
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param data The data to write. Must not be <code>null</code>.
     * @param blockDimensions The dimensions of the block to write to the data set.
     * @param offset The offset of the block in the data set to start writing to in each dimension.
     * @param memoryOffset The offset of the block in the <var>data</var> array.
     */
    public void writeMDArrayBlockWithOffset(String objectPath, MDLongArray data,
            int[] blockDimensions, long[] offset, int[] memoryOffset);
    
    /**
     * Writes out a multi-dimensional array of dates.
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param data The data to write. Must not be <code>null</code>. All columns need to have the
     *            same length.
     * @param features The storage features of the data set.
     */
    public void writeMDArray(String objectPath, MDArray<Date> data,
            HDF5IntStorageFeatures features);
    
    /**
     * Writes out a block of a multi-dimensional array of dates.
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param data The data to write. Must not be <code>null</code>. All columns need to have the
     *            same length.
     * @param blockNumber The block number in each dimension (offset: multiply with the extend in
     *            the according dimension).
     */
    public void writeMDArrayBlock(String objectPath, MDArray<Date> data,
            long[] blockNumber);
    
    /**
     * Writes out a block of a multi-dimensional array of daates.
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param data The data to write. Must not be <code>null</code>. All columns need to have the
     *            same length.
     * @param offset The offset in the data set  to start writing to in each dimension.
     */
    public void writeMDArrayBlockWithOffset(String objectPath, MDArray<Date> data,
            long[] offset);
    
    /**
     * Writes out a block of a multi-dimensional array of dates.
     * 
     * @param objectPath The name (including path information) of the data set object in the file.
     * @param data The data to write. Must not be <code>null</code>.
     * @param blockDimensions The dimensions of the block to write to the data set.
     * @param offset The offset of the block in the data set to start writing to in each dimension.
     * @param memoryOffset The offset of the block in the <var>data</var> array.
     */
    public void writeMDArrayBlockWithOffset(String objectPath, MDArray<Date> data,
            int[] blockDimensions, long[] offset, int[] memoryOffset);

}