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/*
* Copyright 2007 - 2018 ETH Zuerich, CISD and SIS.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package ch.systemsx.cisd.hdf5;
import java.util.Date;
import ch.systemsx.cisd.base.mdarray.MDArray;
import ch.systemsx.cisd.base.mdarray.MDLongArray;
/**
* An interface that provides methods for writing time and date values from HDF5 files.
* <p>
* Obtain an object implementing this interface by calling {@link IHDF5Writer#time()}.
*
* @author Bernd Rinn
*/
public interface IHDF5DateTimeWriter extends IHDF5DateTimeReader
{
// /////////////////////
// Attributes
// /////////////////////
/**
* Set a date value as attribute on the referenced object.
* <p>
* The referenced object must exist, that is it need to have been written before by one of the
* <code>write()</code> methods.
*
* @param objectPath The name of the object to add the attribute to.
* @param attributeName The name of the attribute.
* @param date The value of the attribute.
*/
public void setAttr(String objectPath, String attributeName,
Date date);
/**
* Set a date array value as attribute on the referenced object.
* <p>
* The referenced object must exist, that is it need to have been written before by one of the
* <code>write()</code> methods.
*
* @param objectPath The name of the object to add the attribute to.
* @param attributeName The name of the attribute.
* @param dates The value of the attribute.
*/
public void setArrayAttr(String objectPath, String attributeName,
Date[] dates);
/**
* Set a time stamp value as attribute on the referenced object.
* <p>
* The referenced object must exist, that is it need to have been written before by one of the
* <code>write()</code> methods.
*
* @param objectPath The name of the object to add the attribute to.
* @param attributeName The name of the attribute.
* @param timeStamp The value of the attribute.
*/
public void setAttr(String objectPath, String attributeName,
long timeStamp);
/**
* Set a time stamp array value as attribute on the referenced object.
* <p>
* The referenced object must exist, that is it need to have been written before by one of the
* <code>write()</code> methods.
*
* @param objectPath The name of the object to add the attribute to.
* @param attributeName The name of the attribute.
* @param timeStamps The value of the attribute.
*/
public void setArrayAttr(String objectPath, String attributeName,
long[] timeStamps);
/**
* Sets a multi-dimensional timestamp array attribute on the referenced object.
* <p>
* The referenced object must exist, that is it need to have been written before by one of the
* <code>write()</code> methods.
*
* @param objectPath The name of the object to add the attribute to.
* @param name The name of the attribute.
* @param value The value of the attribute.
*/
public void setMDArrayAttr(String objectPath, String name,
MDLongArray value);
/**
* Sets a multi-dimensional timestamp array attribute on the referenced object.
* <p>
* The referenced object must exist, that is it need to have been written before by one of the
* <code>write()</code> methods.
*
* @param objectPath The name of the object to add the attribute to.
* @param name The name of the attribute.
* @param value The value of the attribute.
*/
public void setMDArrayAttr(String objectPath, String name,
MDArray<Date> value);
// /////////////////////
// Data Sets
// /////////////////////
/**
* Writes out a time stamp value. The data set will be tagged as type variant
* {@link HDF5DataTypeVariant#TIMESTAMP_MILLISECONDS_SINCE_START_OF_THE_EPOCH}.
* <p>
* <em>Note: Time stamps are stored as <code>long</code> values.</em>
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param timeStamp The timestamp to write as number of milliseconds since January 1, 1970,
* 00:00:00 GMT.
*/
public void write(String objectPath, long timeStamp);
/**
* Creates a time stamp array (of rank 1).
* <p>
* <em>Note: Time stamps are stored as <code>long</code> values.</em>
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param size The length of the data set to create.
* @param blockSize The size of one block (for block-wise IO). Ignored if no extendable data
* sets are used (see {@link IHDF5WriterConfigurator#dontUseExtendableDataTypes()})
* and <code>deflate == false</code>.
*/
public void createArray(String objectPath, long size, int blockSize);
/**
* Creates a time stamp array (of rank 1).
* <p>
* <em>Note: Time stamps are stored as <code>long</code> values.</em>
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param size The size of the byte array to create. This will be the total size for
* non-extendable data sets and the size of one chunk for extendable (chunked) data
* sets. For extendable data sets the initial size of the array will be 0, see
* {@link ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator#dontUseExtendableDataTypes}.
*/
public void createArray(String objectPath, int size);
/**
* Creates a time stamp array (of rank 1).
* <p>
* <em>Note: Time stamps are stored as <code>long</code> values.</em>
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param size The length of the data set to create.
* @param blockSize The size of one block (for block-wise IO). Ignored if no extendable data
* sets are used (see {@link IHDF5WriterConfigurator#dontUseExtendableDataTypes()})
* and <code>deflate == false</code>.
* @param features The storage features of the data set.
*/
public void createArray(String objectPath, long size, int blockSize,
HDF5GenericStorageFeatures features);
/**
* Creates a time stamp array (of rank 1).
* <p>
* <em>Note: Time stamps are stored as <code>long</code> values.</em>
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param size The size of the array to create. This will be the total size for non-extendable
* data sets and the size of one chunk for extendable (chunked) data sets. For
* extendable data sets the initial size of the array will be 0, see
* {@link HDF5GenericStorageFeatures}.
* @param features The storage features of the data set.
*/
public void createArray(String objectPath, int size,
HDF5GenericStorageFeatures features);
/**
* Writes out a time stamp array (of rank 1). The data set will be tagged as type variant
* {@link HDF5DataTypeVariant#TIMESTAMP_MILLISECONDS_SINCE_START_OF_THE_EPOCH}.
* <p>
* <em>Note: Time stamps are stored as <code>long</code> values.</em>
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param timeStamps The timestamps to write as number of milliseconds since January 1, 1970,
* 00:00:00 GMT.
*/
public void writeArray(String objectPath, long[] timeStamps);
/**
* Writes out a time stamp array (of rank 1). The data set will be tagged as type variant
* {@link HDF5DataTypeVariant#TIMESTAMP_MILLISECONDS_SINCE_START_OF_THE_EPOCH}.
* <p>
* <em>Note: Time stamps are stored as <code>long</code> values.</em>
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param timeStamps The timestamps to write as number of milliseconds since January 1, 1970,
* 00:00:00 GMT.
* @param features The storage features of the data set.
*/
public void writeArray(String objectPath, long[] timeStamps,
HDF5GenericStorageFeatures features);
/**
* Writes out a block of a time stamp array (which is stored as a <code>long</code> array of
* rank 1). The data set needs to have been created by
* {@link #createArray(String, long, int, HDF5GenericStorageFeatures)} beforehand.
* <p>
* <i>Note:</i> For best performance, the block size in this method should be chosen to be equal
* to the <var>blockSize</var> argument of the
* {@link IHDF5LongWriter#createArray(String, long, int, HDF5IntStorageFeatures)} call that
* was used to create the data set.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param data The data to write. The length defines the block size. Must not be
* <code>null</code> or of length 0.
* @param blockNumber The number of the block to write.
*/
public void writeArrayBlock(String objectPath, long[] data,
long blockNumber);
/**
* Writes out a block of a time stamp array (which is stored as a <code>long</code> array of
* rank 1). The data set needs to have been created by
* {@link #createArray(String, long, int, HDF5GenericStorageFeatures)} beforehand.
* <p>
* Use this method instead of {@link #writeArrayBlock(String, long[], long)} if the
* total size of the data set is not a multiple of the block size.
* <p>
* <i>Note:</i> For best performance, the typical <var>dataSize</var> in this method should be
* chosen to be equal to the <var>blockSize</var> argument of the
* {@link IHDF5LongWriter#createArray(String, long, int, HDF5IntStorageFeatures)} call that
* was used to create the data set.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param data The data to write. The length defines the block size. Must not be
* <code>null</code> or of length 0.
* @param dataSize The (real) size of <code>data</code> (needs to be <code><= data.length</code>
* )
* @param offset The offset in the data set to start writing to.
*/
public void writeArrayBlockWithOffset(String objectPath, long[] data,
int dataSize, long offset);
/**
* Writes out a time stamp value provided as a {@link Date}.
* <p>
* <em>Note: The time stamp is stored as <code>long</code> array and tagged as the according
* type variant.</em>
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param date The date to write.
* @see #write(String, long)
*/
public void write(String objectPath, Date date);
/**
* Writes out a {@link Date} array (of rank 1).
* <p>
* <em>Note: Time stamps are stored as <code>long[]</code> arrays and tagged as the according
* type variant.</em>
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param dates The dates to write.
* @see #writeArray(String, long[])
*/
public void writeArray(String objectPath, Date[] dates);
/**
* Writes out a {@link Date} array (of rank 1).
* <p>
* <em>Note: Time date is stored as <code>long[]</code> arrays and tagged as the according
* type variant.</em>
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param dates The dates to write.
* @param features The storage features of the data set.
* @see #writeArray(String, long[], HDF5GenericStorageFeatures)
*/
public void writeArray(String objectPath, Date[] dates,
HDF5GenericStorageFeatures features);
/**
* Writes out a multi-dimensional array of time stamps.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param data The data to write. Must not be <code>null</code>. All columns need to have the
* same length.
* @param features The storage features of the data set.
*/
public void writeMDArray(String objectPath, MDLongArray data,
HDF5IntStorageFeatures features);
/**
* Creates a multi-dimensional array of time stamps / dates.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param dimensions When the writer is configured to use extendable data types (see
* {@link IHDF5WriterConfigurator#dontUseExtendableDataTypes()}), the initial dimensions
* and the dimensions of a chunk of the array will be <var>dimensions</var>. When the
* writer is configured to <i>enforce</i> a on-extendable data set, the initial dimensions
* equal the dimensions and will be <var>dimensions</var>.
*/
public void createMDArray(String objectPath, int[] dimensions);
/**
* Creates a multi-dimensional array of time stamps / dates.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param dimensions The dimensions of the array.
* @param blockDimensions The dimensions of one block (chunk) of the array.
*/
public void createMDArray(String objectPath, long[] dimensions,
int[] blockDimensions);
/**
* Creates a multi-dimensional array of time stamps / dates.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param dimensions The dimensions of the <code>long</code> array to create. When <i>requesting</i>
* a chunked data set (e.g. {@link HDF5IntStorageFeatures#INT_CHUNKED}),
* the initial size of the array will be 0 and the chunk size will be <var>dimensions</var>.
* When <i>allowing</i> a chunked data set (e.g.
* {@link HDF5IntStorageFeatures#INT_NO_COMPRESSION} when the writer is
* not configured to avoid extendable data types, see
* {@link IHDF5WriterConfigurator#dontUseExtendableDataTypes()}), the initial size
* and the chunk size of the array will be <var>dimensions</var>. When <i>enforcing</i> a
* on-extendable data set (e.g.
* {@link HDF5IntStorageFeatures#INT_CONTIGUOUS}), the initial size equals
* the total size and will be <var>dimensions</var>.
* @param features The storage features of the data set.
*/
public void createMDArray(String objectPath, int[] dimensions,
HDF5IntStorageFeatures features);
/**
* Creates a multi-dimensional array of time stamps / dates.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param dimensions The dimensions of the array.
* @param blockDimensions The dimensions of one block (chunk) of the array.
* @param features The storage features of the data set.
*/
public void createMDArray(String objectPath, long[] dimensions,
int[] blockDimensions, HDF5IntStorageFeatures features);
/**
* Writes out a block of a multi-dimensional array of time stamps.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param data The data to write. Must not be <code>null</code>. All columns need to have the
* same length.
* @param blockNumber The block number in each dimension (offset: multiply with the extend in
* the according dimension).
*/
public void writeMDArrayBlock(String objectPath, MDLongArray data,
long[] blockNumber);
/**
* Writes out a block of a multi-dimensional array of time stamps.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param data The data to write. Must not be <code>null</code>. All columns need to have the
* same length.
* @param offset The offset in the data set to start writing to in each dimension.
*/
public void writeMDArrayBlockWithOffset(String objectPath, MDLongArray data,
long[] offset);
/**
* Writes out a block of a multi-dimensional array of time stamps.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param data The data to write. Must not be <code>null</code>.
* @param blockDimensions The dimensions of the block to write to the data set.
* @param offset The offset of the block in the data set to start writing to in each dimension.
* @param memoryOffset The offset of the block in the <var>data</var> array.
*/
public void writeMDArrayBlockWithOffset(String objectPath, MDLongArray data,
int[] blockDimensions, long[] offset, int[] memoryOffset);
/**
* Writes out a multi-dimensional array of dates.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param data The data to write. Must not be <code>null</code>. All columns need to have the
* same length.
* @param features The storage features of the data set.
*/
public void writeMDArray(String objectPath, MDArray<Date> data,
HDF5IntStorageFeatures features);
/**
* Writes out a block of a multi-dimensional array of dates.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param data The data to write. Must not be <code>null</code>. All columns need to have the
* same length.
* @param blockNumber The block number in each dimension (offset: multiply with the extend in
* the according dimension).
*/
public void writeMDArrayBlock(String objectPath, MDArray<Date> data,
long[] blockNumber);
/**
* Writes out a block of a multi-dimensional array of daates.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param data The data to write. Must not be <code>null</code>. All columns need to have the
* same length.
* @param offset The offset in the data set to start writing to in each dimension.
*/
public void writeMDArrayBlockWithOffset(String objectPath, MDArray<Date> data,
long[] offset);
/**
* Writes out a block of a multi-dimensional array of dates.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param data The data to write. Must not be <code>null</code>.
* @param blockDimensions The dimensions of the block to write to the data set.
* @param offset The offset of the block in the data set to start writing to in each dimension.
* @param memoryOffset The offset of the block in the <var>data</var> array.
*/
public void writeMDArrayBlockWithOffset(String objectPath, MDArray<Date> data,
int[] blockDimensions, long[] offset, int[] memoryOffset);
}
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