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/*
* Copyright 2007 - 2018 ETH Zuerich, CISD and SIS.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package ch.systemsx.cisd.hdf5;
import java.io.Closeable;
import java.util.BitSet;
import java.util.Date;
import java.util.List;
import hdf.hdf5lib.exceptions.HDF5DatatypeInterfaceException;
import hdf.hdf5lib.exceptions.HDF5JavaException;
/**
* A HDF5 reader which contains only the basic methods. If you feel overwhelmed with all the methods
* of {@link IHDF5Reader}, then assign the reader to a {@link IHDF5SimpleReader} variable and let
* the code completion of your IDE help you find the method you are looking for.
* <p>
* Usage:
*
* <pre>
* IHDF5SimpleReader reader = HDF5FactoryProvider.get().openForReading(new File("test.h5"));
* float[] f = reader.readFloatArray("/some/path/dataset");
* reader.close();
* </pre>
*
* @author Bernd Rinn
*/
public interface IHDF5SimpleReader extends Closeable
{
/**
* Closes this object and the file referenced by this object. This object must not be used after
* being closed.
*/
@Override
public void close();
/**
* Returns <code>true</code>, if <var>objectPath</var> exists and <code>false</code> otherwise.
*/
public boolean exists(final String objectPath);
/**
* Returns <code>true</code> if the <var>objectPath</var> exists and represents a group and
* <code>false</code> otherwise.
*/
public boolean isGroup(final String objectPath);
/**
* Returns the information about a data set as a {@link HDF5DataSetInformation} object. It is a
* failure condition if the <var>dataSetPath</var> does not exist or does not identify a data
* set.
*
* @param dataSetPath The name (including path information) of the data set to return
* information about.
*/
public HDF5DataSetInformation getDataSetInformation(final String dataSetPath);
/**
* Returns the members of <var>groupPath</var>. The order is <i>not</i> well defined.
*
* @param groupPath The path of the group to get the members for.
* @throws IllegalArgumentException If <var>groupPath</var> is not a group.
*/
public List<String> getGroupMembers(final String groupPath);
/**
* Reads the data set <var>objectPath</var> as byte array (of rank 1).
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The data read from the data set.
*/
public byte[] readAsByteArray(final String objectPath);
/**
* Reads a <code>Boolean</code> value from the data set <var>objectPath</var>.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The data read from the data set.
* @throws HDF5JavaException If the <var>objectPath</var> is not a boolean type.
*/
public boolean readBoolean(final String objectPath) throws HDF5JavaException;
/**
* Reads a bit field (which can be considered the equivalent to a boolean array of rank 1) from
* the data set <var>objectPath</var> and returns it as a Java {@link BitSet}.
* <p>
* Note that the storage form of the bit array is a <code>long[]</code>. However, it is marked
* in HDF5 to be interpreted bit-wise. Thus a data set written by
* {@link IHDF5LongWriter#writeArray(String, long[])} cannot be read back by this method but
* will throw a {@link HDF5DatatypeInterfaceException}.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The {@link BitSet} read from the data set.
* @throws HDF5DatatypeInterfaceException If the <var>objectPath</var> is not of bit field type.
*/
public BitSet readBitField(final String objectPath) throws HDF5DatatypeInterfaceException;
/**
* Reads a <code>int</code> value from the data set <var>objectPath</var>. This method doesn't
* check the data space but simply reads the first value.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The value read from the data set.
*/
public int readInt(final String objectPath);
/**
* Reads a <code>int</code> array (of rank 1) from the data set <var>objectPath</var>.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The data read from the data set.
*/
public int[] readIntArray(final String objectPath);
/**
* Reads a <code>int</code> matrix (array of arrays) from the data set <var>objectPath</var>.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The data read from the data set.
*/
public int[][] readIntMatrix(final String objectPath);
/**
* Reads a <code>long</code> value from the data set <var>objectPath</var>. This method doesn't
* check the data space but simply reads the first value.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The value read from the data set.
*/
public long readLong(final String objectPath);
/**
* Reads a <code>long</code> array (of rank 1) from the data set <var>objectPath</var>.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The data read from the data set.
*/
public long[] readLongArray(final String objectPath);
/**
* Reads a <code>long</code> matrix (array of arrays) from the data set <var>objectPath</var>.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The data read from the data set.
*/
public long[][] readLongMatrix(final String objectPath);
/**
* Reads a <code>float</code> value from the data set <var>objectPath</var>. This method doesn't
* check the data space but simply reads the first value.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The value read from the data set.
*/
public float readFloat(final String objectPath);
/**
* Reads a <code>float</code> array (of rank 1) from the data set <var>objectPath</var>.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The data read from the data set.
*/
public float[] readFloatArray(final String objectPath);
/**
* Reads a <code>float</code> matrix (array of arrays) from the data set <var>objectPath</var>.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The data read from the data set.
*/
public float[][] readFloatMatrix(final String objectPath);
/**
* Reads a <code>double</code> value from the data set <var>objectPath</var>. This method
* doesn't check the data space but simply reads the first value.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The value read from the data set.
*/
public double readDouble(final String objectPath);
/**
* Reads a <code>double</code> array (of rank 1) from the data set <var>objectPath</var>.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The data read from the data set.
*/
public double[] readDoubleArray(final String objectPath);
/**
* Reads a <code>double</code> matrix (array of arrays) from the data set <var>objectPath</var>.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The data read from the data set.
*/
public double[][] readDoubleMatrix(final String objectPath);
/**
* Reads a date value from the data set <var>objectPath</var>. It needs to have been written by
* {@link IHDF5SimpleWriter#writeDate(String, Date)}.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The time stamp as {@link Date}.
* @throws HDF5JavaException If the <var>objectPath</var> does not denote a time stamp.
*/
public Date readDate(final String objectPath) throws HDF5JavaException;
/**
* Reads a date array (of rank 1) from the data set <var>objectPath</var>. It needs to have been
* written by {@link IHDF5SimpleWriter#writeDateArray(String, Date[])}.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The time stamp as {@link Date}.
* @throws HDF5JavaException If the <var>objectPath</var> does not denote a time stamp.
*/
public Date[] readDateArray(final String objectPath) throws HDF5JavaException;
/**
* Reads a time duration value from the data set <var>objectPath</var>. It needs to have been
* written by {@link IHDF5SimpleWriter#writeTimeDuration(String, HDF5TimeDuration)}.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The time duration in seconds.
* @throws HDF5JavaException If the <var>objectPath</var> is not tagged as a type variant that
* corresponds to a time duration.
*/
public HDF5TimeDuration readTimeDuration(final String objectPath) throws HDF5JavaException;
/**
* Reads a time duration array from the data set <var>objectPath</var>. It needs to have been
* written by {@link IHDF5SimpleWriter#writeTimeDurationArray(String, HDF5TimeDurationArray)}.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The time duration in seconds.
* @throws HDF5JavaException If the <var>objectPath</var> is not defined as type variant
* {@link HDF5DataTypeVariant#TIMESTAMP_MILLISECONDS_SINCE_START_OF_THE_EPOCH}.
*/
public HDF5TimeDurationArray readTimeDurationArray(final String objectPath)
throws HDF5JavaException;
/**
* Reads a <code>String</code> from the data set <var>objectPath</var>. Considers '\0' as end of
* string. This needs to be a string type.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The data read from the data set.
* @throws HDF5JavaException If the <var>objectPath</var> is not a string type.
*/
public String readString(final String objectPath) throws HDF5JavaException;
/**
* Reads a <code>String</code> array (of rank 1) from the data set <var>objectPath</var>. The
* elements of this data set need to be a string type.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The data read from the data set.
*/
public String[] readStringArray(final String objectPath) throws HDF5JavaException;
/**
* Reads a compound from the data set <var>objectPath</var>.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param pojoClass The class to return the result in. Use {@link HDF5CompoundDataMap} to get it
* in a map, {@link HDF5CompoundDataList} to get it in a list, and
* <code>Object[]</code> to get it in an array, or use a pojo (Data Transfer Object),
* in which case the compound members will be mapped to Java fields.
* @return The data read from the data set.
* @throws HDF5JavaException If the <var>objectPath</var> is not a compound data set.
* @see CompoundType
* @see CompoundElement
*/
public <T> T readCompound(final String objectPath, final Class<T> pojoClass)
throws HDF5JavaException;
/**
* Reads a compound array (of rank 1) from the data set <var>objectPath</var>.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param pojoClass The class to return the result in. Use {@link HDF5CompoundDataMap} to get it
* in a map, {@link HDF5CompoundDataList} to get it in a list, and
* <code>Object[]</code> to get it in an array, or use a pojo (Data Transfer Object),
* in which case the compound members will be mapped to Java fields.
* @return The data read from the data set.
* @throws HDF5JavaException If the <var>objectPath</var> is not a compound data set.
* @see CompoundType
* @see CompoundElement
*/
public <T> T[] readCompoundArray(final String objectPath, final Class<T> pojoClass)
throws HDF5JavaException;
/**
* Reads an <code>Enum</code> value from the data set <var>objectPath</var>.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param enumClass the {@link Enum} class to represent the values of.
* @return The data read from the data set.
* @throws HDF5JavaException If the <var>objectPath</var> is not of <var>enumType</var> or if
* <var>enumClass</var> is incompatible with the HDF5 enumeration type of
* <var>objectPath</var>.
*/
public <T extends Enum<T>> T readEnum(final String objectPath, Class<T> enumClass)
throws HDF5JavaException;
/**
* Reads an <code>Enum</code> value from the data set <var>objectPath</var>.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The data read from the data set as a String.
* @throws HDF5JavaException If the <var>objectPath</var> is not an enum type.
*/
public String readEnumAsString(final String objectPath) throws HDF5JavaException;
/**
* Reads an <code>Enum</code> value array from the data set <var>objectPath</var>.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @param enumClass the {@link Enum} class to represent the values of.
* @return The data read from the data set.
* @throws HDF5JavaException If the <var>objectPath</var> is not of <var>enumType</var>.
*/
public <T extends Enum<T>> T[] readEnumArray(final String objectPath, Class<T> enumClass)
throws HDF5JavaException;
/**
* Reads an <code>Enum</code> array (of rank 1) from the data set <var>objectPath</var>.
*
* @param objectPath The name (including path information) of the data set object in the file.
* @return The data read from the data set as an array of Strings.
* @throws HDF5JavaException If the <var>objectPath</var> is not an enum type.
*/
public String[] readEnumArrayAsString(final String objectPath) throws HDF5JavaException;
}
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