1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
|
"""
Print out which fields of FAST5 files are static or variable for the same experiment.
Given h5dump output of any number of FAST5 files.
Show the constant values with -c flag.
Usage: python3 $0 [h5dump_FAST5_output...] [-c]
"""
from sys import argv
attrs = {}
var = []
const = []
args = argv[1:]
if "-c" in args:
args.remove("-c")
show_const = True
else:
show_const = False
for fname in args:
f = open(fname)
for line in f:
line = line.split()
if line[0] == "ATTRIBUTE" or line[0] == "DATASET":
curr_attr = line[1][1:-1]
# Create empty set for attribute if not already there
if curr_attr not in attrs:
attrs[curr_attr] = set()
# Data follows a (0)
elif line[0] == "(0):":
# Store attribute's data
data = " ".join(line[1:])
attrs[curr_attr].add(data)
for prop in attrs:
if len(attrs[prop]) == 1:
const.append(prop)
else:
var.append(prop)
# Print properties which are constant and variable
print("Constant:")
for prop in const:
if show_const:
print(f"{prop}: {list(attrs[prop])[0]}")
else:
print(f"{prop}")
print("\nVariable:")
for prop in var:
print(prop)
|
