1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
|
# -*- Autoconf -*-
# Process this file with autoconf to produce a configure script.
AC_INIT(smithwaterman, 0.0, erik.garrison@bc.edu)
AC_CONFIG_HEADERS([config.h])
AC_PREREQ(2.57)
# Directory that contains install-sh and other auxiliary files
AC_CONFIG_AUX_DIR([config])
################################################################################
# According to (http://www.mail-archive.com/autoconf@gnu.org/msg14232.html)
# this macro should be after AC_INIT but before AM_INIT_AUTOMAKE
################################################################################
AC_CONFIG_MACRO_DIR(config)
AM_INIT_AUTOMAKE([1.6 foreign dist-zip tar-ustar filename-length-max=299])
LIB_VERSION=0:0
AC_SUBST([VERSION])
AC_SUBST([LIB_VERSION])
AC_SUBST([VERSION])
# Checks for programs.
AC_PROG_LN_S
AC_PROG_INSTALL
AC_PROG_LIBTOOL
################################################################################
# calling AC_PROG_CXX resets CXXFLAGS, we use our own flags set in the
# the AX_CXXFLAGS macro below.
# So we cache the argument to configure
# here in ARG_CXX_FLAGS (so that our macro does not override them)
################################################################################
ARG_CXX_FLAGS="$CXXFLAGS"
AC_PROG_CXX
#Ranlib handled by check for libtool
CXXFLAGS="$ARG_CXX_FLAGS"
AX_CXXFLAGS
AC_SUBST(CXXFLAGS)
CPPFLAGS="-I\$(top_srcdir) $CPPFLAGS"
# Checks for libraries.
# Checks for header files.
AC_HEADER_STDC
AC_CHECK_HEADERS([stdlib.h])
AC_PROG_MAKE_SET
AC_CONFIG_FILES([
Makefile
libsmithwaterman.pc
])
AC_OUTPUT
|
