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#! /usr/local/bin/perl -w
###################################
# #
# Script parse.pl #
# Wolfgang Bluhm, SDSC #
# #
###################################
# A simple application script for the
# parsing module STAR::Parser
use STAR::Parser;
use strict;
use Getopt::Std;
use vars qw($opt_d $opt_D $opt_l $opt_s);
my ($file, $dict, @objs, $obj, $title);
my $options = "";
getopt('');
$options .= 'd' if ( $opt_d ); #debug
$options .= 'l' if ( $opt_l ); #logfile
$dict = 1 if ( $opt_D ); #Dictionary
$file = $ARGV[0];
@objs = STAR::Parser->parse(-file=>$file,
-dict=>$dict,
-options=>$options);
foreach $obj ( @objs ) {
if ( $opt_s ) { # save data structure
$title =($obj->title).".cob";
$obj->store($title);
}
}
=head1 DESCRIPTION
Parses a STAR-compliant file (e.g. .cif file or dictionary).
Command line options including saving the parsed data structure
=head1 USAGE
perl parse.pl [-dDls] <.cif file>
-d writes debugging log to STDERR
-D file to be parsed is a dictionary
-l writes program activity log to STDERR
-s Saves each entry as a .cob file to disk
=cut
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