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/*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
#ifndef _CONSTANT_H_
#define _CONSTANT_H_
#define COMPAREFUNC (int (*)(const void *, const void *))
#define BUFSIZE 1024
#define FILENAMELEN 100
#define IDLEN 20
#define SEPARATORS " \t\n\r\f/"
#define WHITESPACE " \t\n\r\f"
#define SWTABLESKIP 9
#define SWTABLEMAX 10000
#define _NAN_ ((double) (6.66666e-66))
#define QTDTDATA "qtdt.dat"
#define QTDTPED "qtdt.ped"
#define QTDTIBD "qtdt.ibd"
#define QTDTRAW "regress.tbl"
#define GENIHDATAIN "genih.dat"
#ifndef _WIN32
#define stricmp strcasecmp
#endif
// Constants for older haplotype handling programs
// Constants for HAPLOXT
#define XT_MAX_ALLELES 50 // Maximum alleles for crosstabulation
#define XT_VECTORSIZE 10000 // Total haplotypes in population
#define XT_POOLTRESH 7 // Threshold for pooling rare alleles
// Simwalk Haplotype Vectors
#define HV_MAXSIZE 100 // Haplotypes in single SimWalk pedigree
#define HV_INFOTRESH 75 // Percentage of loci typed
#define HV_STATELENGTH 100 // Markers per haplotype
#define HV_SKIPLINES 4 // lines to skip at bottom of family tree
// Simwalk Summary Files
#define HT_TABLE_SIZE 1000
#define HT_SKIP_LINES 9
#endif
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