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include ../../Makefiles/Makefile.include
.DEFAULT_GOAL := all
SUBDIRS=inputFileTest cigar string memoryMapArrayTest packedVectorTest referenceSequenceTest nonOverlapRegions baseUtilitiesTest trimSequence reusableVector
OPTFLAG?=-O0
.PHONY: $(SUBDIRS) all test clean
all: TARGET = all
test: TARGET = test
clean: TARGET = clean
all test: $(SUBDIRS)
clean: $(SUBDIRS)
# clean current directory
rm -f *.o *~
rm -f phiX-bs.umfa phiX-cs.umfa gtest
$(SUBDIRS):
@$(MAKE) OPTFLAG="$(OPTFLAG)" -C $@ $(TARGET)
######################################################################
GTEST_COMPILE_FLAG=-DGTEST_HAS_TR1_TUPLE=0 -D GTEST_HAS_RTTI=0
LIBRARY=$(REQ_LIBS)
.c.o :
$(CXX) $(UPSTREAMCFLAGS) $(GTEST_COMPILE_FLAG) -o $@ -c $*.c -DVERSION=\""$(VERSION)\"" -DDATE="\"${DATE}\"" -DNODE="\"${NODE}\"" -DUSER="\"${USER}\"" -I$(GTEST_INC)
.cpp.o :
$(CXX) $(UPSTREAMCFLAGS) $(GTEST_COMPILE_FLAG) -o $@ -c $*.cpp -DVERSION="\"$(VERSION)\"" -DDATE="\"${DATE}\"" -DNODE="\"${NODE}\"" -DUSER="\"${USER}\"" -I$(GTEST_INC)
# Google test part
GTEST_ROOT=../../../gtest-1.5.0
GTEST_INC = $(GTEST_ROOT)/include
GTEST_SRC = $(GTEST_ROOT)/src/gtest-all.cc
GTEST_OBJ = $(GTEST_ROOT)/gtest-all.o
$(GTEST_OBJ): $(GTEST_SRC)
g++ -c -o $@ $< -I$(GTEST_INC) -I$(GTEST_ROOT)
#TOOLTEST=$(TOOLBASE:=_test)
TOOLTEST=gtest TrimSequence_test GreedyTupleAligner_test STLUtilities_test GenomeSequence_test Chromosome_test
TOOLTESTHDR=$(TOOLTEST:=.h)
TOOLTESTSRC=$(TOOLTEST:=.cpp)
TOOLTESTOBJ=$(TOOLTESTSRC:.cpp=.o)
TOOLOBJ_NOMAIN=$(TOOLOBJ:Main.o=)
GenomeSequence_test.o: GenomeSequence_test.cpp ../GenomeSequence.h ../GenomeSequence.cpp
$(CXX) $(UPSTREAMCFLAGS) $(GTEST_COMPILE_FLAG) -o $@ -c $< -DVERSION="\"$(VERSION)\"" -DDATE="\"${DATE}\"" -DNODE="\"${NODE}\"" -DUSER="\"${USER}\"" -I$(GTEST_INC)
STLUtilities_test.o: STLUtilities_test.cpp ../STLUtilities.h ../STLUtilities.cpp
$(CXX) $(UPSTREAMCFLAGS) $(GTEST_COMPILE_FLAG) -std=c++0x -o $@ -c $< -DVERSION="\"$(VERSION)\"" -DDATE="\"${DATE}\"" -DNODE="\"${NODE}\"" -DUSER="\"${USER}\"" -I$(GTEST_INC)
TrimSequence_test.o: TrimSequence_test.cpp ../TrimSequence.h
$(CXX) $(UPSTREAMCFLAGS) $(GTEST_COMPILE_FLAG) -o $@ -c $< -DVERSION="\"$(VERSION)\"" -DDATE="\"${DATE}\"" -DNODE="\"${NODE}\"" -DUSER="\"${USER}\"" -I$(GTEST_INC)
GreedyTupleAligner_test.o: GreedyTupleAligner_test.cpp ../GreedyTupleAligner.h
$(CXX) $(UPSTREAMCFLAGS) $(GTEST_COMPILE_FLAG) -o $@ -c $< -DVERSION="\"$(VERSION)\"" -DDATE="\"${DATE}\"" -DNODE="\"${NODE}\"" -DUSER="\"${USER}\"" -I$(GTEST_INC)
Chromosome_test.o: Chromosome_test.cpp ../Chromosome.h
$(CXX) $(UPSTREAMCFLAGS) $(GTEST_COMPILE_FLAG) -o $@ -c $< -DVERSION="\"$(VERSION)\"" -DDATE="\"${DATE}\"" -DNODE="\"${NODE}\"" -DUSER="\"${USER}\"" -I$(GTEST_INC)
gtest_build: $(TOOLTESTOBJ) $(TOOLOBJ) $(GTEST_OBJ)
g++ $(TOOLTESTOBJ) $(TOOLOBJ_NOMAIN) $(GTEST_OBJ) $(LIBRARY) -lm -lz -lssl -lpthread -lcrypto -o ./gtest ../../libStatGen_debug.a
gtest: gtest_build
./gtest --gtest_color=yes
include $(MAKEFILES_PATH)/Makefile.footer
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